Wall clock time and date at job start Wed Apr 1 2020 04:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.52686 * 2 1 4 4 N 1.46503 * 109.47051 * 299.92130 * 3 2 1 5 5 C 1.34776 * 119.99917 * 180.02562 * 4 3 2 6 6 O 1.21592 * 120.00361 * 359.97438 * 5 4 3 7 7 C 1.47525 * 119.99749 * 179.97438 * 5 4 3 8 8 C 1.36598 * 125.77050 * 180.02562 * 7 5 4 9 9 N 1.34804 * 106.84201 * 179.97438 * 8 7 5 10 10 C 1.46504 * 126.59785 * 179.97438 * 9 8 7 11 11 C 1.53779 * 113.61099 * 12.49375 * 10 9 8 12 12 C 1.53777 * 87.08269 * 220.01942 * 11 10 9 13 13 C 1.53780 * 113.61189 * 274.99979 * 10 9 8 14 14 N 1.40210 * 106.81129 * 359.97438 * 9 8 7 15 15 N 1.28764 * 108.36732 * 359.74674 * 14 9 8 16 16 C 1.53047 * 109.49741 * 120.08053 * 2 1 3 17 17 C 1.53041 * 109.53398 * 58.58553 * 16 2 1 18 18 C 1.53189 * 109.31549 * 61.36851 * 17 16 2 19 19 N 1.46931 * 108.77413 * 305.36064 * 18 17 16 20 20 C 1.36936 * 120.63054 * 233.58542 * 19 18 17 21 21 H 1.07998 * 119.99901 * 27.70009 * 20 19 18 22 22 C 1.38808 * 119.99799 * 207.69304 * 20 19 18 23 23 N 1.31615 * 119.99919 * 17.37347 * 22 20 19 24 24 Si 1.86803 * 119.99890 * 197.36546 * 22 20 19 25 25 H 1.48503 * 109.47142 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46750 * 120.00271 * 24 22 20 27 27 H 1.48496 * 109.47304 * 240.00264 * 24 22 20 28 28 C 1.46921 * 118.73782 * 53.60816 * 19 18 17 29 29 H 1.09001 * 109.46997 * 180.08249 * 1 2 3 30 30 H 1.09001 * 109.47073 * 300.08158 * 1 2 3 31 31 H 1.08997 * 109.46876 * 60.08116 * 1 2 3 32 32 H 1.08999 * 109.46994 * 59.91624 * 3 2 1 33 33 H 1.08994 * 109.47315 * 179.91706 * 3 2 1 34 34 H 0.96996 * 120.00087 * 359.97438 * 4 3 2 35 35 H 1.08010 * 126.57652 * 359.97438 * 8 7 5 36 36 H 1.09002 * 112.85159 * 143.80159 * 10 9 8 37 37 H 1.09002 * 113.61664 * 334.57237 * 11 10 9 38 38 H 1.08999 * 113.61323 * 105.47156 * 11 10 9 39 39 H 1.08997 * 113.61754 * 270.88401 * 12 11 10 40 40 H 1.08999 * 113.61522 * 139.98129 * 12 11 10 41 41 H 1.08998 * 113.61602 * 254.52651 * 13 10 9 42 42 H 1.08998 * 113.61355 * 25.34657 * 13 10 9 43 43 H 1.09001 * 109.45753 * 298.57157 * 16 2 1 44 44 H 1.08994 * 109.45841 * 178.60309 * 16 2 1 45 45 H 1.08999 * 109.50299 * 301.41052 * 17 16 2 46 46 H 1.09006 * 109.51964 * 181.33647 * 17 16 2 47 47 H 1.09000 * 109.58654 * 185.57580 * 18 17 16 48 48 H 1.08995 * 109.58535 * 65.14827 * 18 17 16 49 49 H 0.97007 * 119.99487 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.58827 * 66.17612 * 28 19 18 51 51 H 1.08995 * 109.59083 * 186.60352 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 7 1.5553 2.1325 -1.1971 5 6 1.8828 3.4222 -1.4108 6 8 2.5814 4.0129 -0.6099 7 6 1.3938 4.1174 -2.6166 8 6 1.6526 5.4167 -2.9495 9 7 1.0237 5.6532 -4.1182 10 6 1.0148 6.9130 -4.8659 11 6 2.0532 7.9321 -4.3680 12 6 0.9808 9.0127 -4.5848 13 6 -0.0651 7.9013 -4.3948 14 7 0.3798 4.4616 -4.4806 15 7 0.6238 3.5774 -3.5768 16 6 2.0408 -0.7231 1.2484 17 6 1.5030 -2.1558 1.2660 18 6 2.0140 -2.9041 0.0308 19 7 1.6515 -2.1382 -1.1696 20 6 0.9639 -2.7315 -2.1945 21 1 0.3080 -3.5655 -1.9931 22 6 1.1099 -2.2608 -3.4921 23 7 2.1347 -1.4959 -3.8033 24 14 -0.1482 -2.7132 -4.7968 25 1 -1.1963 -3.5765 -4.1955 26 1 -0.7729 -1.4767 -5.3318 27 1 0.5241 -3.4454 -5.8999 28 6 2.0413 -0.7239 -1.2496 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6773 1.9565 0.8892 33 1 3.1313 1.4409 0.0015 34 1 0.9983 1.6612 -1.8363 35 1 2.2470 6.1196 -2.3846 36 1 1.0296 6.7645 -5.9457 37 1 2.3317 7.7967 -3.3229 38 1 2.9154 8.0344 -5.0270 39 1 0.9872 9.4393 -5.5877 40 1 0.9598 9.7704 -3.8015 41 1 -0.9130 7.9786 -5.0753 42 1 -0.3667 7.7565 -3.3574 43 1 1.6987 -0.1958 2.1389 44 1 3.1305 -0.7445 1.2353 45 1 0.4132 -2.1355 1.2541 46 1 1.8475 -2.6631 2.1671 47 1 1.5553 -3.8919 -0.0137 48 1 3.0979 -3.0043 0.0868 49 1 2.2369 -1.1673 -4.7103 50 1 3.1275 -0.6464 -1.2980 51 1 1.6008 -0.2731 -2.1388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270958605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:36 Heat of formation + Delta-G solvation = 98.172033 kcal Electronic energy + Delta-G solvation = -31424.883583 eV Core-core repulsion = 27362.586613 eV Total energy + Delta-G solvation = -4062.296970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.28629 -39.57359 -39.10542 -38.08243 -34.71465 -33.36690 -32.99025 -31.43826 -30.71857 -29.78700 -26.81346 -26.40202 -26.29608 -25.52643 -25.18572 -23.17285 -22.47476 -22.05110 -20.57070 -20.14883 -19.96337 -18.54845 -17.71874 -16.68696 -16.40618 -16.31916 -15.76531 -15.69582 -15.01288 -14.77092 -14.52177 -14.08365 -13.87674 -13.81891 -13.46109 -13.38338 -13.15586 -13.08103 -12.99137 -12.67159 -12.37990 -12.21236 -12.12334 -12.07992 -11.55545 -11.39039 -11.25832 -11.21791 -10.96082 -10.88642 -10.77401 -10.58240 -10.32113 -10.31174 -10.10861 -10.01778 -9.91327 -9.74139 -9.48087 -9.29986 -9.27247 -8.61153 -8.39847 -6.59376 -5.71969 -3.13955 1.11299 1.85184 1.92545 3.43188 3.43920 3.52175 3.52765 3.53652 3.66832 3.81857 4.10091 4.15611 4.23902 4.56056 4.67973 4.76559 4.95444 5.01042 5.06981 5.17792 5.20950 5.25732 5.30912 5.37651 5.41108 5.51737 5.59648 5.65391 5.66003 5.83527 5.84292 6.03635 6.11556 6.16580 6.24285 6.31519 6.32145 6.48375 6.50093 6.60948 6.70367 6.81227 6.90103 6.95176 7.04255 7.12003 7.37697 7.67472 7.79623 7.86346 8.07995 8.47919 8.50953 9.27762 9.91402 10.48305 11.35795 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.002993 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.186304 B = 9351.730201 C =11094.333563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.136 3.864 4 N -0.699 5.699 5 C 0.602 3.398 6 O -0.553 6.553 7 C -0.096 4.096 8 C 0.087 3.913 9 N -0.354 5.354 10 C 0.122 3.878 11 C -0.147 4.147 12 C -0.135 4.135 13 C -0.145 4.145 14 N -0.065 5.065 15 N -0.195 5.195 16 C -0.094 4.094 17 C -0.135 4.135 18 C 0.144 3.856 19 N -0.588 5.588 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.005 3.995 23 N -0.898 5.898 24 Si 0.895 3.105 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.292 1.292 28 C 0.184 3.816 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.415 0.585 35 H 0.200 0.800 36 H 0.133 0.867 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.016 0.984 49 H 0.253 0.747 50 H 0.017 0.983 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 20.179 2.350 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.105 4.105 3 C 0.012 3.988 4 N -0.349 5.349 5 C 0.385 3.615 6 O -0.432 6.432 7 C -0.235 4.235 8 C -0.069 4.069 9 N -0.139 5.139 10 C 0.021 3.979 11 C -0.186 4.186 12 C -0.173 4.173 13 C -0.184 4.184 14 N -0.045 5.045 15 N -0.069 5.069 16 C -0.133 4.133 17 C -0.174 4.174 18 C 0.017 3.983 19 N -0.310 5.310 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.194 4.194 23 N -0.542 5.542 24 Si 0.725 3.275 25 H -0.204 1.204 26 H -0.213 1.213 27 H -0.219 1.219 28 C 0.057 3.943 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.253 0.747 35 H 0.217 0.783 36 H 0.151 0.849 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.033 0.967 49 H 0.063 0.937 50 H 0.035 0.965 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.851 19.917 1.678 20.073 hybrid contribution -0.163 0.164 -0.524 0.573 sum -2.014 20.081 1.154 20.215 Atomic orbital electron populations 1.21733 0.94471 1.02662 0.99566 1.21542 0.96555 0.92611 0.99795 1.21437 0.98983 0.92138 0.86198 1.45902 1.52307 1.10949 1.25774 1.16730 0.79784 0.81894 0.83056 1.90758 1.39226 1.66891 1.46281 1.21552 1.08312 0.93481 1.00152 1.23160 0.97371 0.97912 0.88503 1.50576 1.34960 1.12156 1.16200 1.23393 0.99618 0.77237 0.97692 1.23472 0.97715 0.94054 1.03340 1.22710 0.94916 0.96320 1.03380 1.23442 0.97542 0.94175 1.03222 1.82040 1.17358 0.86367 1.18716 1.74755 1.09751 1.22831 0.99540 1.21342 0.99916 0.96001 0.95994 1.22051 1.01010 0.95723 0.98658 1.20921 0.96309 0.94221 0.86832 1.43981 1.65322 1.05546 1.16185 1.19167 1.18066 1.15115 0.85762 0.91764 1.24993 0.96952 1.00535 0.96888 1.70025 1.27241 1.38260 1.18710 0.86332 0.81347 0.77857 0.81919 1.20363 1.21301 1.21896 1.20820 0.96168 0.83795 0.93484 0.90945 0.94569 0.93475 0.92052 0.91608 0.74749 0.78288 0.84901 0.88510 0.89316 0.89031 0.89809 0.89656 0.88992 0.93403 0.92569 0.91951 0.93275 0.93001 0.96651 0.93692 0.96488 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 7.82 37.16 0.29 -2.00 16 2 C -0.10 -1.89 0.53 -154.38 -0.08 -1.97 16 3 C 0.14 2.36 4.57 -4.04 -0.02 2.34 16 4 N -0.70 -12.59 4.99 -61.36 -0.31 -12.90 16 5 C 0.60 10.63 7.82 -12.47 -0.10 10.54 16 6 O -0.55 -10.43 16.86 5.28 0.09 -10.34 16 7 C -0.10 -1.54 6.99 -83.55 -0.58 -2.12 16 8 C 0.09 1.07 10.48 -16.84 -0.18 0.89 16 9 N -0.35 -4.12 3.83 -53.77 -0.21 -4.32 16 10 C 0.12 0.87 5.06 -67.12 -0.34 0.53 16 11 C -0.15 -0.69 7.44 -25.92 -0.19 -0.88 16 12 C -0.14 -0.48 8.08 -25.92 -0.21 -0.69 16 13 C -0.15 -0.81 7.88 -25.92 -0.20 -1.01 16 14 N -0.07 -1.04 13.78 60.35 0.83 -0.20 16 15 N -0.20 -3.47 12.04 32.85 0.40 -3.08 16 16 C -0.09 -1.57 4.71 -26.69 -0.13 -1.70 16 17 C -0.14 -2.32 5.74 -26.61 -0.15 -2.47 16 18 C 0.14 2.99 6.52 -3.71 -0.02 2.96 16 19 N -0.59 -14.39 2.43 -172.32 -0.42 -14.81 16 20 C -0.25 -6.80 9.58 -15.06 -0.14 -6.95 16 21 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 22 C 0.01 0.14 4.91 -17.43 -0.09 0.06 16 23 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 24 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 C 0.18 4.25 3.73 -3.71 -0.01 4.24 16 29 H 0.07 1.42 5.97 -51.93 -0.31 1.11 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.88 6.87 -51.93 -0.36 0.52 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.41 7.97 5.91 -40.82 -0.24 7.73 16 35 H 0.20 1.77 6.78 -52.48 -0.36 1.41 16 36 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.44 6.39 -51.93 -0.33 0.11 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 1.09 6.33 -51.93 -0.33 0.76 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.09 2.33 4.94 -51.93 -0.26 2.08 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -32.76 399.19 -8.23 -40.99 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.06 Total: 5.31 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.16 Total: 1.76 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.92 Total: -60.70 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.76 -8.23 -40.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270958605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.162 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds