Wall clock time and date at job start Wed Apr 1 2020 04:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.52686 * 2 1 4 4 N 1.46503 * 109.47051 * 299.92130 * 3 2 1 5 5 C 1.34776 * 119.99917 * 180.02562 * 4 3 2 6 6 O 1.21592 * 120.00361 * 359.97438 * 5 4 3 7 7 C 1.47525 * 119.99749 * 179.97438 * 5 4 3 8 8 C 1.36598 * 125.77050 * 180.02562 * 7 5 4 9 9 N 1.34804 * 106.84201 * 179.97438 * 8 7 5 10 10 C 1.46504 * 126.59785 * 179.97438 * 9 8 7 11 11 C 1.53779 * 113.61099 * 12.49375 * 10 9 8 12 12 C 1.53777 * 87.08269 * 220.01942 * 11 10 9 13 13 C 1.53780 * 113.61189 * 274.99979 * 10 9 8 14 14 N 1.40210 * 106.81129 * 359.97438 * 9 8 7 15 15 N 1.28764 * 108.36732 * 359.74674 * 14 9 8 16 16 C 1.53047 * 109.49741 * 120.08053 * 2 1 3 17 17 C 1.53041 * 109.53398 * 58.58553 * 16 2 1 18 18 C 1.53189 * 109.31549 * 61.36851 * 17 16 2 19 19 N 1.46931 * 108.77413 * 305.36064 * 18 17 16 20 20 C 1.36936 * 120.63054 * 233.58542 * 19 18 17 21 21 H 1.07998 * 119.99901 * 27.70009 * 20 19 18 22 22 C 1.38808 * 119.99799 * 207.69304 * 20 19 18 23 23 N 1.31615 * 119.99919 * 17.37347 * 22 20 19 24 24 Si 1.86803 * 119.99890 * 197.36546 * 22 20 19 25 25 H 1.48503 * 109.47142 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46750 * 120.00271 * 24 22 20 27 27 H 1.48496 * 109.47304 * 240.00264 * 24 22 20 28 28 C 1.46921 * 118.73782 * 53.60816 * 19 18 17 29 29 H 1.09001 * 109.46997 * 180.08249 * 1 2 3 30 30 H 1.09001 * 109.47073 * 300.08158 * 1 2 3 31 31 H 1.08997 * 109.46876 * 60.08116 * 1 2 3 32 32 H 1.08999 * 109.46994 * 59.91624 * 3 2 1 33 33 H 1.08994 * 109.47315 * 179.91706 * 3 2 1 34 34 H 0.96996 * 120.00087 * 359.97438 * 4 3 2 35 35 H 1.08010 * 126.57652 * 359.97438 * 8 7 5 36 36 H 1.09002 * 112.85159 * 143.80159 * 10 9 8 37 37 H 1.09002 * 113.61664 * 334.57237 * 11 10 9 38 38 H 1.08999 * 113.61323 * 105.47156 * 11 10 9 39 39 H 1.08997 * 113.61754 * 270.88401 * 12 11 10 40 40 H 1.08999 * 113.61522 * 139.98129 * 12 11 10 41 41 H 1.08998 * 113.61602 * 254.52651 * 13 10 9 42 42 H 1.08998 * 113.61355 * 25.34657 * 13 10 9 43 43 H 1.09001 * 109.45753 * 298.57157 * 16 2 1 44 44 H 1.08994 * 109.45841 * 178.60309 * 16 2 1 45 45 H 1.08999 * 109.50299 * 301.41052 * 17 16 2 46 46 H 1.09006 * 109.51964 * 181.33647 * 17 16 2 47 47 H 1.09000 * 109.58654 * 185.57580 * 18 17 16 48 48 H 1.08995 * 109.58535 * 65.14827 * 18 17 16 49 49 H 0.97007 * 119.99487 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.58827 * 66.17612 * 28 19 18 51 51 H 1.08995 * 109.59083 * 186.60352 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 7 1.5553 2.1325 -1.1971 5 6 1.8828 3.4222 -1.4108 6 8 2.5814 4.0129 -0.6099 7 6 1.3938 4.1174 -2.6166 8 6 1.6526 5.4167 -2.9495 9 7 1.0237 5.6532 -4.1182 10 6 1.0148 6.9130 -4.8659 11 6 2.0532 7.9321 -4.3680 12 6 0.9808 9.0127 -4.5848 13 6 -0.0651 7.9013 -4.3948 14 7 0.3798 4.4616 -4.4806 15 7 0.6238 3.5774 -3.5768 16 6 2.0408 -0.7231 1.2484 17 6 1.5030 -2.1558 1.2660 18 6 2.0140 -2.9041 0.0308 19 7 1.6515 -2.1382 -1.1696 20 6 0.9639 -2.7315 -2.1945 21 1 0.3080 -3.5655 -1.9931 22 6 1.1099 -2.2608 -3.4921 23 7 2.1347 -1.4959 -3.8033 24 14 -0.1482 -2.7132 -4.7968 25 1 -1.1963 -3.5765 -4.1955 26 1 -0.7729 -1.4767 -5.3318 27 1 0.5241 -3.4454 -5.8999 28 6 2.0413 -0.7239 -1.2496 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6773 1.9565 0.8892 33 1 3.1313 1.4409 0.0015 34 1 0.9983 1.6612 -1.8363 35 1 2.2470 6.1196 -2.3846 36 1 1.0296 6.7645 -5.9457 37 1 2.3317 7.7967 -3.3229 38 1 2.9154 8.0344 -5.0270 39 1 0.9872 9.4393 -5.5877 40 1 0.9598 9.7704 -3.8015 41 1 -0.9130 7.9786 -5.0753 42 1 -0.3667 7.7565 -3.3574 43 1 1.6987 -0.1958 2.1389 44 1 3.1305 -0.7445 1.2353 45 1 0.4132 -2.1355 1.2541 46 1 1.8475 -2.6631 2.1671 47 1 1.5553 -3.8919 -0.0137 48 1 3.0979 -3.0043 0.0868 49 1 2.2369 -1.1673 -4.7103 50 1 3.1275 -0.6464 -1.2980 51 1 1.6008 -0.2731 -2.1388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270958605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:35 Heat of formation + Delta-G solvation = 77.255921 kcal Electronic energy + Delta-G solvation = -31425.790574 eV Core-core repulsion = 27362.586613 eV Total energy + Delta-G solvation = -4063.203961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.34958 -40.89695 -39.86905 -39.51103 -36.32151 -34.92111 -34.17876 -32.99455 -31.99546 -31.52458 -28.06307 -27.62233 -27.13930 -26.82604 -26.60400 -24.47066 -23.76066 -23.33821 -22.10228 -21.42452 -20.55756 -19.82408 -19.10315 -18.48119 -17.54301 -17.21663 -17.10030 -16.74689 -16.49292 -16.01733 -15.81279 -15.69995 -15.35459 -15.12197 -15.05462 -14.73639 -14.33472 -14.19190 -13.83159 -13.75229 -13.70704 -13.51059 -13.24414 -13.10216 -12.99631 -12.91275 -12.73972 -12.57861 -12.26838 -12.10842 -12.04418 -11.85476 -11.83492 -11.70321 -11.51433 -11.37667 -11.37349 -11.15099 -11.03728 -10.94341 -10.49906 -10.43464 -9.99290 -8.60800 -7.82554 -5.26372 0.10017 0.58349 1.06469 1.44406 1.48871 1.56748 2.15352 2.23830 2.52954 3.05695 3.17661 3.31319 3.37014 3.59059 3.65654 3.73927 3.74470 3.87143 3.97253 4.07047 4.07527 4.14868 4.39895 4.42763 4.53856 4.57271 4.59390 4.65118 4.73779 4.77426 4.78691 4.84109 4.89598 4.93084 5.02942 5.05277 5.07275 5.13846 5.20198 5.27985 5.30591 5.33871 5.43398 5.49849 5.51254 5.53453 5.65180 5.75639 5.81919 6.40146 6.42931 6.86787 7.09843 7.19839 7.92417 8.43599 9.21929 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.002993 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.186304 B = 9351.730201 C =11094.333563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.091 4.091 3 C 0.141 3.859 4 N -0.705 5.705 5 C 0.602 3.398 6 O -0.567 6.567 7 C -0.125 4.125 8 C 0.110 3.890 9 N -0.336 5.336 10 C 0.099 3.901 11 C -0.141 4.141 12 C -0.120 4.120 13 C -0.145 4.145 14 N -0.095 5.095 15 N -0.234 5.234 16 C -0.093 4.093 17 C -0.124 4.124 18 C 0.136 3.864 19 N -0.604 5.604 20 C -0.252 4.252 21 H 0.065 0.935 22 C -0.045 4.045 23 N -0.928 5.928 24 Si 0.952 3.048 25 H -0.265 1.265 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.195 3.805 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.407 0.593 35 H 0.237 0.763 36 H 0.141 0.859 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.051 0.949 48 H 0.008 0.992 49 H 0.245 0.755 50 H -0.017 1.017 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 22.241 3.921 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.093 4.093 3 C 0.017 3.983 4 N -0.354 5.354 5 C 0.387 3.613 6 O -0.447 6.447 7 C -0.266 4.266 8 C -0.048 4.048 9 N -0.120 5.120 10 C -0.001 4.001 11 C -0.180 4.180 12 C -0.158 4.158 13 C -0.184 4.184 14 N -0.075 5.075 15 N -0.106 5.106 16 C -0.131 4.131 17 C -0.163 4.163 18 C 0.011 3.989 19 N -0.327 5.327 20 C -0.382 4.382 21 H 0.083 0.917 22 C -0.241 4.241 23 N -0.574 5.574 24 Si 0.782 3.218 25 H -0.189 1.189 26 H -0.222 1.222 27 H -0.223 1.223 28 C 0.069 3.931 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.244 0.756 35 H 0.253 0.747 36 H 0.159 0.841 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.026 0.974 49 H 0.054 0.946 50 H 0.001 0.999 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.299 21.975 3.256 22.334 hybrid contribution 0.014 -0.424 -1.037 1.120 sum -2.285 21.551 2.220 21.785 Atomic orbital electron populations 1.21642 0.93839 1.01829 1.00315 1.21346 0.96848 0.92851 0.98273 1.21420 0.98475 0.91568 0.86808 1.45984 1.52319 1.11283 1.25855 1.16912 0.79327 0.81634 0.83381 1.90729 1.39936 1.67095 1.46956 1.21581 1.09887 0.95038 1.00074 1.23625 0.96061 0.96911 0.88233 1.50941 1.32929 1.12221 1.15888 1.24108 1.02215 0.75691 0.98075 1.23542 0.97817 0.92855 1.03756 1.22696 0.92771 0.95599 1.04685 1.23465 0.97818 0.94392 1.02682 1.81923 1.18788 0.87792 1.18973 1.74720 1.11083 1.24310 1.00506 1.21369 0.99874 0.95781 0.96053 1.21930 1.00955 0.95691 0.97686 1.21114 0.96021 0.94590 0.87180 1.44235 1.65296 1.06427 1.16758 1.19440 1.17627 1.14647 0.86515 0.91735 1.25623 0.98480 1.01254 0.98702 1.70181 1.28929 1.39863 1.18427 0.85425 0.79611 0.77191 0.79606 1.18949 1.22178 1.22272 1.20558 0.93815 0.83812 0.94923 0.92470 0.91514 0.95000 0.89899 0.92471 0.75645 0.74716 0.84133 0.88054 0.88126 0.87567 0.88625 0.89372 0.89844 0.89916 0.92725 0.91831 0.89957 0.93050 0.97356 0.94576 0.99938 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 7.82 71.98 0.56 -3.61 16 2 C -0.09 -3.30 0.53 -52.10 -0.03 -3.33 16 3 C 0.14 4.82 4.57 86.38 0.39 5.21 16 4 N -0.70 -26.07 4.99 -466.29 -2.33 -28.40 16 5 C 0.60 21.57 7.82 86.69 0.68 22.24 16 6 O -0.57 -21.10 16.86 -4.01 -0.07 -21.17 16 7 C -0.13 -4.12 6.99 40.82 0.29 -3.83 16 8 C 0.11 2.58 10.48 83.85 0.88 3.46 16 9 N -0.34 -7.58 3.83 -324.03 -1.24 -8.82 16 10 C 0.10 1.25 5.06 45.52 0.23 1.48 16 11 C -0.14 -0.92 7.44 31.12 0.23 -0.69 16 12 C -0.12 -0.48 8.08 31.12 0.25 -0.23 16 13 C -0.14 -1.34 7.88 31.12 0.25 -1.09 16 14 N -0.10 -3.11 13.78 37.02 0.51 -2.60 16 15 N -0.23 -8.68 12.04 -49.99 -0.60 -9.28 16 16 C -0.09 -2.86 4.71 30.62 0.14 -2.72 16 17 C -0.12 -3.93 5.74 30.67 0.18 -3.76 16 18 C 0.14 5.61 6.52 86.36 0.56 6.18 16 19 N -0.60 -30.15 2.43 -699.11 -1.70 -31.85 16 20 C -0.25 -13.90 9.58 84.03 0.81 -13.10 16 21 H 0.06 3.50 7.89 -2.91 -0.02 3.47 16 22 C -0.04 -2.56 4.91 84.86 0.42 -2.14 16 23 N -0.93 -56.17 11.19 21.65 0.24 -55.93 16 24 Si 0.95 46.57 29.59 68.60 2.03 48.60 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 26 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 27 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 28 C 0.19 9.35 3.73 86.36 0.32 9.67 16 29 H 0.06 2.18 5.97 -2.39 -0.01 2.17 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.03 1.19 6.87 -2.39 -0.02 1.17 16 32 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.41 16.52 5.91 -92.71 -0.55 15.97 16 35 H 0.24 3.57 6.78 -2.91 -0.02 3.55 16 36 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 0.60 6.39 -2.39 -0.02 0.58 16 38 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.11 0.16 8.14 -2.39 -0.02 0.15 16 40 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.06 2.04 6.33 -2.39 -0.02 2.02 16 46 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 47 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 48 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 49 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 50 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 51 H 0.06 3.25 4.94 -2.39 -0.01 3.23 16 Total: -1.00 -74.60 399.19 3.40 -71.20 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.40 Total: 24.49 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 6.16 Total: 13.76 kcal Atomic # 7 Polarization: -131.76 SS G_CDS: -5.12 Total: -136.88 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.07 Total: -21.17 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -74.60 3.40 -71.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270958605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.461 kcal (2) G-P(sol) polarization free energy of solvation -74.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds