Wall clock time and date at job start Wed Apr 1 2020 04:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.45975 * 2 1 4 4 N 1.46494 * 109.47321 * 59.99864 * 3 2 1 5 5 C 1.34776 * 119.99907 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00142 * 0.27277 * 5 4 3 7 7 C 1.50703 * 119.99876 * 179.97438 * 5 4 3 8 8 H 1.08991 * 109.69410 * 300.55099 * 7 5 4 9 9 C 1.53435 * 109.69263 * 179.97438 * 7 5 4 10 10 C 1.53107 * 109.55647 * 190.56266 * 9 7 5 11 11 C 1.53421 * 109.57996 * 70.05384 * 10 9 7 12 12 C 1.50593 * 108.33855 * 310.17975 * 11 10 9 13 13 N 1.32903 * 129.16727 * 196.53541 * 12 11 10 14 14 N 1.29020 * 108.64171 * 179.82825 * 13 12 11 15 15 N 1.29110 * 110.25483 * 0.09894 * 14 13 12 16 16 H 0.97001 * 126.01116 * 180.02562 * 15 14 13 17 17 C 1.34401 * 107.98393 * 0.02562 * 15 14 13 18 18 C 1.53042 * 109.45954 * 119.96596 * 2 1 3 19 19 C 1.53198 * 109.30844 * 58.62791 * 18 2 1 20 20 N 1.46932 * 108.76377 * 54.65913 * 19 18 2 21 21 C 1.36931 * 120.63136 * 126.40142 * 20 19 18 22 22 H 1.08000 * 120.00441 * 331.82794 * 21 20 19 23 23 C 1.38811 * 119.99941 * 151.82354 * 21 20 19 24 24 N 1.31621 * 120.00185 * 343.07603 * 23 21 20 25 25 Si 1.86798 * 120.00374 * 163.07358 * 23 21 20 26 26 H 1.48510 * 109.47069 * 89.99825 * 25 23 21 27 27 H 1.48494 * 109.47482 * 210.00152 * 25 23 21 28 28 H 1.48502 * 109.46986 * 330.00338 * 25 23 21 29 29 C 1.46929 * 118.73541 * 306.37930 * 20 19 18 30 30 C 1.53039 * 109.46300 * 240.02177 * 2 1 3 31 31 H 1.08999 * 109.46544 * 60.00275 * 1 2 3 32 32 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47199 * 300.00693 * 1 2 3 34 34 H 1.09000 * 109.47088 * 299.99320 * 3 2 1 35 35 H 1.09005 * 109.47009 * 179.97438 * 3 2 1 36 36 H 0.97004 * 120.00314 * 359.97438 * 4 3 2 37 37 H 1.08998 * 109.45989 * 310.59254 * 9 7 5 38 38 H 1.09002 * 109.45727 * 70.55940 * 9 7 5 39 39 H 1.09005 * 109.45546 * 190.08493 * 10 9 7 40 40 H 1.09003 * 109.45603 * 310.04455 * 10 9 7 41 41 H 1.09002 * 109.69527 * 69.88961 * 11 10 9 42 42 H 1.09004 * 109.69224 * 190.42622 * 11 10 9 43 43 H 1.09002 * 109.50092 * 178.59101 * 18 2 1 44 44 H 1.08998 * 109.49879 * 298.69592 * 18 2 1 45 45 H 1.08997 * 109.60240 * 294.86735 * 19 18 2 46 46 H 1.09005 * 109.69958 * 174.50330 * 19 18 2 47 47 H 0.97001 * 120.00306 * 179.97438 * 24 23 21 48 48 H 1.08996 * 109.58941 * 293.82237 * 29 20 19 49 49 H 1.08995 * 109.70022 * 173.46345 * 29 20 19 50 50 H 1.09003 * 109.49437 * 61.31289 * 30 2 1 51 51 H 1.09004 * 109.49813 * 181.40704 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5513 2.1332 1.1961 5 6 1.8762 3.4237 1.4090 6 8 2.5689 4.0148 0.6080 7 6 1.3733 4.1343 2.6392 8 1 0.2834 4.1273 2.6476 9 6 1.8817 5.5819 2.6444 10 6 1.5965 6.2204 4.0064 11 6 2.5029 5.5882 5.0706 12 6 2.3987 4.0905 4.9526 13 7 2.7550 3.1530 5.8247 14 7 2.4861 1.9965 5.3198 15 7 1.9671 2.1313 4.1453 16 1 1.6796 1.4109 3.5628 17 6 1.8950 3.4452 3.8717 18 6 2.0399 -0.7208 1.2501 19 6 1.4989 -2.1540 1.2645 20 7 1.8620 -2.8089 0.0004 21 6 2.5254 -4.0068 0.0006 22 1 3.1730 -4.2654 0.8253 23 6 2.3654 -4.8890 -1.0591 24 7 1.3510 -4.7475 -1.8858 25 14 3.5896 -6.2770 -1.3121 26 1 3.1361 -7.4790 -0.5672 27 1 3.6829 -6.5973 -2.7591 28 1 4.9233 -5.8582 -0.8109 29 6 1.4993 -2.1542 -1.2640 30 6 2.0399 -0.7210 -1.2499 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.6764 1.9563 -0.8900 35 1 3.1298 1.4428 0.0005 36 1 0.9934 1.6618 1.8345 37 1 2.9555 5.5903 2.4571 38 1 1.3728 6.1483 1.8645 39 1 1.7917 7.2916 3.9532 40 1 0.5529 6.0544 4.2738 41 1 3.5347 5.8986 4.9058 42 1 2.1789 5.9025 6.0628 43 1 3.1296 -0.7431 1.2383 44 1 1.6959 -0.1934 2.1398 45 1 0.4140 -2.1343 1.3675 46 1 1.9353 -2.7030 2.0990 47 1 1.2394 -5.3637 -2.6266 48 1 0.4145 -2.1346 -1.3673 49 1 1.9361 -2.7012 -2.0995 50 1 1.6961 -0.1937 -2.1398 51 1 3.1297 -0.7432 -1.2380 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278623135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:05 Heat of formation + Delta-G solvation = 63.530340 kcal Electronic energy + Delta-G solvation = -31990.331754 eV Core-core repulsion = 27926.532607 eV Total energy + Delta-G solvation = -4063.799147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.84554 -40.39047 -38.84027 -37.11226 -35.32502 -34.31841 -33.20760 -31.29066 -30.85071 -30.46579 -29.93380 -27.30617 -27.06050 -25.06684 -24.10312 -23.38777 -22.91198 -22.47924 -21.12682 -20.84326 -19.94323 -18.68798 -18.11427 -17.55451 -16.65297 -16.43503 -16.08770 -15.89712 -15.09113 -14.92969 -14.53453 -14.35268 -14.29438 -14.11413 -13.98666 -13.78558 -13.63430 -13.39724 -13.09708 -12.71736 -12.63504 -12.14720 -11.95016 -11.74427 -11.68091 -11.57428 -11.45821 -11.45303 -11.30827 -11.03108 -10.88562 -10.76947 -10.69656 -10.63352 -10.39525 -10.30146 -10.23475 -9.91644 -9.64468 -9.56112 -9.31066 -9.21686 -8.51778 -6.73701 -5.86095 -3.28451 1.15028 2.10697 2.22331 2.38869 2.83466 3.33184 3.40786 3.43205 3.84085 3.95623 4.20715 4.31893 4.43741 4.46891 4.73066 4.79998 4.87784 4.88866 4.94673 5.00854 5.03767 5.18330 5.31537 5.38794 5.46212 5.51721 5.54839 5.61123 5.64412 5.68151 5.74782 5.83721 5.86263 5.90267 5.93437 5.95107 6.13877 6.18610 6.26250 6.35162 6.43987 6.50027 6.54264 6.63074 6.72697 6.84084 7.09493 7.27565 7.58776 7.73647 7.82171 8.12758 8.38006 9.14508 9.77461 10.33497 11.22462 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019467 B = 0.002574 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.013396 B =10877.504033 C =11749.241783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C 0.127 3.873 4 N -0.727 5.727 5 C 0.513 3.487 6 O -0.522 6.522 7 C -0.032 4.032 8 H 0.119 0.881 9 C -0.097 4.097 10 C -0.119 4.119 11 C -0.036 4.036 12 C -0.003 4.003 13 N -0.258 5.258 14 N -0.074 5.074 15 N -0.379 5.379 16 H 0.444 0.556 17 C -0.016 4.016 18 C -0.119 4.119 19 C 0.145 3.855 20 N -0.589 5.589 21 C -0.254 4.254 22 H 0.065 0.935 23 C 0.004 3.996 24 N -0.902 5.902 25 Si 0.901 3.099 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.279 1.279 29 C 0.172 3.828 30 C -0.128 4.128 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.390 0.610 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.021 0.979 46 H 0.053 0.947 47 H 0.254 0.746 48 H 0.022 0.978 49 H 0.087 0.913 50 H 0.052 0.948 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 21.777 8.733 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C 0.004 3.996 4 N -0.380 5.380 5 C 0.297 3.703 6 O -0.397 6.397 7 C -0.056 4.056 8 H 0.137 0.863 9 C -0.136 4.136 10 C -0.157 4.157 11 C -0.075 4.075 12 C -0.143 4.143 13 N -0.123 5.123 14 N -0.053 5.053 15 N -0.100 5.100 16 H 0.292 0.708 17 C -0.152 4.152 18 C -0.158 4.158 19 C 0.018 3.982 20 N -0.312 5.312 21 C -0.384 4.384 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.547 5.547 25 Si 0.731 3.269 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.205 1.205 29 C 0.046 3.954 30 C -0.168 4.168 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.225 0.775 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.050 0.950 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.040 0.960 49 H 0.105 0.895 50 H 0.071 0.929 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.710 21.132 9.190 23.203 hybrid contribution -0.273 -1.011 -1.099 1.518 sum -2.983 20.120 8.092 21.891 Atomic orbital electron populations 1.21958 0.94557 1.03277 1.00215 1.20739 0.95861 0.91837 0.98117 1.21684 0.99238 0.92368 0.86320 1.46298 1.53502 1.11804 1.26442 1.20379 0.80688 0.81995 0.87207 1.90734 1.36920 1.65584 1.46470 1.20078 1.02119 0.96254 0.87124 0.86326 1.21478 1.03450 0.90668 0.97980 1.21683 1.00062 1.00411 0.93582 1.20036 1.01421 0.85532 1.00540 1.21726 1.03375 0.98009 0.91229 1.74876 1.17658 0.94563 1.25245 1.78661 1.14160 1.18822 0.93627 1.44935 1.42282 1.07616 1.15130 0.70826 1.21452 1.09217 0.84449 1.00078 1.22076 1.01062 0.98487 0.94211 1.20913 0.96358 0.90442 0.90491 1.44004 1.66789 1.21128 0.99299 1.19158 1.19176 0.93384 1.06663 0.91777 1.25030 0.97062 0.97520 0.99876 1.70017 1.27864 1.38631 1.18163 0.86323 0.81294 0.82163 0.77151 1.21364 1.21523 1.20481 1.20790 0.96623 0.87591 0.90390 1.22199 1.00751 0.99591 0.94221 0.92881 0.90445 0.94245 0.91178 0.91312 0.77486 0.89859 0.89644 0.89858 0.91139 0.89541 0.89401 0.91836 0.95014 0.96155 0.92841 0.93597 0.95963 0.89451 0.92897 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.54 37.16 0.28 -1.58 16 2 C -0.06 -0.90 0.53 -154.46 -0.08 -0.99 16 3 C 0.13 1.58 4.56 -4.04 -0.02 1.56 16 4 N -0.73 -7.39 4.51 -60.29 -0.27 -7.66 16 5 C 0.51 5.56 7.13 -10.98 -0.08 5.48 16 6 O -0.52 -7.52 15.83 5.56 0.09 -7.43 16 7 C -0.03 -0.25 2.90 -92.78 -0.27 -0.52 16 8 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 9 C -0.10 -0.67 4.67 -26.45 -0.12 -0.80 16 10 C -0.12 -0.60 5.90 -26.46 -0.16 -0.76 16 11 C -0.04 -0.25 6.30 -27.72 -0.17 -0.42 16 12 C 0.00 -0.04 7.11 -83.13 -0.59 -0.63 16 13 N -0.26 -3.41 12.40 33.16 0.41 -3.00 16 14 N -0.07 -0.97 13.40 60.35 0.81 -0.16 16 15 N -0.38 -3.93 6.77 33.39 0.23 -3.70 16 16 H 0.44 3.81 5.98 -190.07 -1.14 2.68 16 17 C -0.02 -0.16 6.38 -82.49 -0.53 -0.68 16 18 C -0.12 -1.76 4.75 -26.61 -0.13 -1.89 16 19 C 0.14 2.73 6.05 -3.70 -0.02 2.71 16 20 N -0.59 -13.76 2.99 -172.32 -0.52 -14.28 16 21 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 22 H 0.06 1.69 7.88 -52.49 -0.41 1.27 16 23 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 24 N -0.90 -25.34 11.19 55.49 0.62 -24.72 16 25 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 C 0.17 3.77 4.83 -3.71 -0.02 3.75 16 30 C -0.13 -2.19 4.91 -26.61 -0.13 -2.32 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.22 4.98 -51.93 -0.26 0.96 16 33 H 0.04 0.41 6.86 -51.93 -0.36 0.05 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.39 3.25 4.36 -40.82 -0.18 3.07 16 37 H 0.08 0.72 7.74 -51.93 -0.40 0.32 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.03 0.36 5.91 -51.93 -0.31 0.06 16 45 H 0.02 0.38 6.69 -51.93 -0.35 0.04 16 46 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 47 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.02 0.51 6.69 -51.93 -0.35 0.16 16 49 H 0.09 2.22 6.07 -51.93 -0.31 1.90 16 50 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -32.12 383.15 -8.84 -40.95 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.68 Total: 1.91 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.27 Total: -3.93 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 1.28 Total: -53.53 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: 0.09 Total: -7.43 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.12 -8.84 -40.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278623135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.483 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds