Wall clock time and date at job start Wed Apr 1 2020 04:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.45975 * 2 1 4 4 N 1.46494 * 109.47321 * 59.99864 * 3 2 1 5 5 C 1.34776 * 119.99907 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00142 * 0.27277 * 5 4 3 7 7 C 1.50703 * 119.99876 * 179.97438 * 5 4 3 8 8 H 1.08991 * 109.69410 * 300.55099 * 7 5 4 9 9 C 1.53435 * 109.69263 * 179.97438 * 7 5 4 10 10 C 1.53107 * 109.55647 * 190.56266 * 9 7 5 11 11 C 1.53421 * 109.57996 * 70.05384 * 10 9 7 12 12 C 1.50593 * 108.33855 * 310.17975 * 11 10 9 13 13 N 1.32903 * 129.16727 * 196.53541 * 12 11 10 14 14 N 1.29020 * 108.64171 * 179.82825 * 13 12 11 15 15 N 1.29110 * 110.25483 * 0.09894 * 14 13 12 16 16 H 0.97001 * 126.01116 * 180.02562 * 15 14 13 17 17 C 1.34401 * 107.98393 * 0.02562 * 15 14 13 18 18 C 1.53042 * 109.45954 * 119.96596 * 2 1 3 19 19 C 1.53198 * 109.30844 * 58.62791 * 18 2 1 20 20 N 1.46932 * 108.76377 * 54.65913 * 19 18 2 21 21 C 1.36931 * 120.63136 * 126.40142 * 20 19 18 22 22 H 1.08000 * 120.00441 * 331.82794 * 21 20 19 23 23 C 1.38811 * 119.99941 * 151.82354 * 21 20 19 24 24 N 1.31621 * 120.00185 * 343.07603 * 23 21 20 25 25 Si 1.86798 * 120.00374 * 163.07358 * 23 21 20 26 26 H 1.48510 * 109.47069 * 89.99825 * 25 23 21 27 27 H 1.48494 * 109.47482 * 210.00152 * 25 23 21 28 28 H 1.48502 * 109.46986 * 330.00338 * 25 23 21 29 29 C 1.46929 * 118.73541 * 306.37930 * 20 19 18 30 30 C 1.53039 * 109.46300 * 240.02177 * 2 1 3 31 31 H 1.08999 * 109.46544 * 60.00275 * 1 2 3 32 32 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47199 * 300.00693 * 1 2 3 34 34 H 1.09000 * 109.47088 * 299.99320 * 3 2 1 35 35 H 1.09005 * 109.47009 * 179.97438 * 3 2 1 36 36 H 0.97004 * 120.00314 * 359.97438 * 4 3 2 37 37 H 1.08998 * 109.45989 * 310.59254 * 9 7 5 38 38 H 1.09002 * 109.45727 * 70.55940 * 9 7 5 39 39 H 1.09005 * 109.45546 * 190.08493 * 10 9 7 40 40 H 1.09003 * 109.45603 * 310.04455 * 10 9 7 41 41 H 1.09002 * 109.69527 * 69.88961 * 11 10 9 42 42 H 1.09004 * 109.69224 * 190.42622 * 11 10 9 43 43 H 1.09002 * 109.50092 * 178.59101 * 18 2 1 44 44 H 1.08998 * 109.49879 * 298.69592 * 18 2 1 45 45 H 1.08997 * 109.60240 * 294.86735 * 19 18 2 46 46 H 1.09005 * 109.69958 * 174.50330 * 19 18 2 47 47 H 0.97001 * 120.00306 * 179.97438 * 24 23 21 48 48 H 1.08996 * 109.58941 * 293.82237 * 29 20 19 49 49 H 1.08995 * 109.70022 * 173.46345 * 29 20 19 50 50 H 1.09003 * 109.49437 * 61.31289 * 30 2 1 51 51 H 1.09004 * 109.49813 * 181.40704 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5513 2.1332 1.1961 5 6 1.8762 3.4237 1.4090 6 8 2.5689 4.0148 0.6080 7 6 1.3733 4.1343 2.6392 8 1 0.2834 4.1273 2.6476 9 6 1.8817 5.5819 2.6444 10 6 1.5965 6.2204 4.0064 11 6 2.5029 5.5882 5.0706 12 6 2.3987 4.0905 4.9526 13 7 2.7550 3.1530 5.8247 14 7 2.4861 1.9965 5.3198 15 7 1.9671 2.1313 4.1453 16 1 1.6796 1.4109 3.5628 17 6 1.8950 3.4452 3.8717 18 6 2.0399 -0.7208 1.2501 19 6 1.4989 -2.1540 1.2645 20 7 1.8620 -2.8089 0.0004 21 6 2.5254 -4.0068 0.0006 22 1 3.1730 -4.2654 0.8253 23 6 2.3654 -4.8890 -1.0591 24 7 1.3510 -4.7475 -1.8858 25 14 3.5896 -6.2770 -1.3121 26 1 3.1361 -7.4790 -0.5672 27 1 3.6829 -6.5973 -2.7591 28 1 4.9233 -5.8582 -0.8109 29 6 1.4993 -2.1542 -1.2640 30 6 2.0399 -0.7210 -1.2499 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.6764 1.9563 -0.8900 35 1 3.1298 1.4428 0.0005 36 1 0.9934 1.6618 1.8345 37 1 2.9555 5.5903 2.4571 38 1 1.3728 6.1483 1.8645 39 1 1.7917 7.2916 3.9532 40 1 0.5529 6.0544 4.2738 41 1 3.5347 5.8986 4.9058 42 1 2.1789 5.9025 6.0628 43 1 3.1296 -0.7431 1.2383 44 1 1.6959 -0.1934 2.1398 45 1 0.4140 -2.1343 1.3675 46 1 1.9353 -2.7030 2.0990 47 1 1.2394 -5.3637 -2.6266 48 1 0.4145 -2.1346 -1.3673 49 1 1.9361 -2.7012 -2.0995 50 1 1.6961 -0.1937 -2.1398 51 1 3.1297 -0.7432 -1.2380 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278623135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:03 Heat of formation + Delta-G solvation = 42.225528 kcal Electronic energy + Delta-G solvation = -31991.255599 eV Core-core repulsion = 27926.532607 eV Total energy + Delta-G solvation = -4064.722993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -44.64833 -41.35067 -40.07714 -37.79163 -36.67563 -35.27540 -34.52533 -32.86957 -31.73880 -31.38985 -31.17005 -28.79005 -28.09464 -26.19789 -25.35056 -24.24237 -23.99526 -23.58228 -22.47946 -21.93137 -20.55705 -19.76268 -19.37057 -18.47526 -18.08119 -17.42668 -17.13361 -16.74715 -16.69595 -15.95055 -15.71955 -15.55026 -15.18591 -15.12881 -15.00498 -14.89581 -14.70528 -14.55477 -14.40455 -14.13495 -13.50788 -13.19642 -13.06209 -13.03685 -12.75167 -12.68872 -12.59446 -12.44886 -12.39627 -12.25913 -12.22862 -12.01741 -11.96146 -11.86070 -11.67420 -11.56736 -11.38389 -11.25298 -11.10658 -10.99200 -10.51712 -10.26002 -9.98626 -8.65543 -7.89506 -5.33264 0.36004 1.28543 1.42582 1.42993 1.45408 1.54037 1.61436 1.99491 2.48890 3.15075 3.25144 3.28383 3.52286 3.65238 3.68424 3.76777 3.78352 3.88612 3.91754 4.17047 4.28263 4.32024 4.33240 4.45001 4.47109 4.52202 4.59360 4.68466 4.69971 4.75176 4.78177 4.94003 4.98717 4.99874 5.00452 5.08142 5.11972 5.13186 5.19727 5.22030 5.31300 5.33751 5.36376 5.46560 5.47551 5.53081 5.64289 5.69878 5.82278 6.26838 6.38375 6.98978 7.15004 7.29286 7.87425 8.36909 9.16192 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019467 B = 0.002574 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.013396 B =10877.504033 C =11749.241783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.055 4.055 3 C 0.140 3.860 4 N -0.719 5.719 5 C 0.514 3.486 6 O -0.558 6.558 7 C -0.023 4.023 8 H 0.156 0.844 9 C -0.098 4.098 10 C -0.109 4.109 11 C -0.039 4.039 12 C -0.011 4.011 13 N -0.289 5.289 14 N -0.108 5.108 15 N -0.372 5.372 16 H 0.450 0.550 17 C -0.009 4.009 18 C -0.109 4.109 19 C 0.140 3.860 20 N -0.608 5.608 21 C -0.262 4.262 22 H 0.061 0.939 23 C -0.047 4.047 24 N -0.931 5.931 25 Si 0.960 3.040 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.275 1.275 29 C 0.180 3.820 30 C -0.119 4.119 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.401 0.599 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.027 0.973 46 H 0.046 0.954 47 H 0.249 0.751 48 H 0.009 0.991 49 H 0.046 0.954 50 H 0.070 0.930 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.656 24.472 9.734 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.055 4.055 3 C 0.016 3.984 4 N -0.373 5.373 5 C 0.300 3.700 6 O -0.435 6.435 7 C -0.046 4.046 8 H 0.173 0.827 9 C -0.136 4.136 10 C -0.147 4.147 11 C -0.078 4.078 12 C -0.152 4.152 13 N -0.154 5.154 14 N -0.087 5.087 15 N -0.093 5.093 16 H 0.299 0.701 17 C -0.146 4.146 18 C -0.148 4.148 19 C 0.015 3.985 20 N -0.332 5.332 21 C -0.393 4.393 22 H 0.079 0.921 23 C -0.243 4.243 24 N -0.577 5.577 25 Si 0.788 3.212 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.200 1.200 29 C 0.054 3.946 30 C -0.158 4.158 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.238 0.762 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.045 0.955 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.027 0.973 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.683 23.824 10.241 26.192 hybrid contribution 0.022 -1.822 -1.393 2.294 sum -3.661 22.002 8.848 23.995 Atomic orbital electron populations 1.21897 0.93230 1.02006 1.02425 1.20575 0.96728 0.92386 0.95827 1.21342 0.98355 0.91139 0.87534 1.46156 1.53418 1.11801 1.25885 1.20859 0.79788 0.81731 0.87601 1.90732 1.38451 1.66353 1.48006 1.20226 1.04060 0.96005 0.84357 0.82684 1.21521 1.02269 0.90232 0.99582 1.21670 1.00291 1.01242 0.91501 1.20236 1.02188 0.83429 1.01958 1.22354 1.02615 0.99330 0.90920 1.74839 1.18702 0.95261 1.26580 1.78614 1.15914 1.19239 0.94907 1.44920 1.41619 1.08216 1.14590 0.70118 1.21750 1.08409 0.84032 1.00398 1.21931 1.00083 0.96285 0.96513 1.21077 0.96832 0.92367 0.88260 1.44249 1.66945 1.20808 1.01205 1.19446 1.19027 0.94425 1.06386 0.92148 1.25697 0.98626 0.99898 1.00084 1.70154 1.29395 1.39542 1.18635 0.85395 0.79494 0.79650 0.76620 1.21162 1.21835 1.19970 1.20564 0.95532 0.89762 0.88719 1.22007 0.99807 0.97023 0.97007 0.91951 0.93370 0.90874 0.90831 0.92708 0.76157 0.91966 0.88391 0.87682 0.89723 0.89422 0.88389 0.93248 0.90945 0.95476 0.93557 0.94139 0.97334 0.93527 0.91162 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 7.54 71.98 0.54 -2.70 16 2 C -0.05 -1.42 0.53 -52.15 -0.03 -1.45 16 3 C 0.14 3.15 4.56 86.38 0.39 3.54 16 4 N -0.72 -12.23 4.51 -463.06 -2.09 -14.32 16 5 C 0.51 9.60 7.13 87.66 0.63 10.22 16 6 O -0.56 -14.89 15.83 -3.02 -0.05 -14.94 16 7 C -0.02 -0.28 2.90 -12.19 -0.04 -0.32 16 8 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 9 C -0.10 -1.03 4.67 30.78 0.14 -0.88 16 10 C -0.11 -0.68 5.90 30.77 0.18 -0.50 16 11 C -0.04 -0.44 6.30 29.96 0.19 -0.25 16 12 C -0.01 -0.22 7.11 41.75 0.30 0.08 16 13 N -0.29 -7.39 12.40 -49.00 -0.61 -8.00 16 14 N -0.11 -2.75 13.40 37.02 0.50 -2.25 16 15 N -0.37 -6.91 6.77 -48.27 -0.33 -7.24 16 16 H 0.45 6.46 5.98 -219.68 -1.31 5.15 16 17 C -0.01 -0.15 6.38 41.50 0.26 0.11 16 18 C -0.11 -3.04 4.75 30.67 0.15 -2.90 16 19 C 0.14 5.23 6.05 86.36 0.52 5.75 16 20 N -0.61 -29.00 2.99 -699.09 -2.09 -31.09 16 21 C -0.26 -14.22 9.58 84.03 0.81 -13.41 16 22 H 0.06 3.24 7.88 -2.91 -0.02 3.22 16 23 C -0.05 -2.62 4.92 84.86 0.42 -2.20 16 24 N -0.93 -54.09 11.19 21.65 0.24 -53.85 16 25 Si 0.96 44.80 29.59 68.60 2.03 46.83 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 29 C 0.18 8.12 4.83 86.36 0.42 8.54 16 30 C -0.12 -4.04 4.91 30.67 0.15 -3.89 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.45 4.98 -2.39 -0.01 1.43 16 33 H 0.07 1.21 6.86 -2.39 -0.02 1.19 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.40 5.01 4.36 -92.71 -0.40 4.61 16 37 H 0.06 0.95 7.74 -2.39 -0.02 0.93 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 40 H 0.08 0.35 8.12 -2.39 -0.02 0.33 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.43 5.91 -2.39 -0.01 1.41 16 45 H 0.03 0.99 6.69 -2.39 -0.02 0.98 16 46 H 0.05 1.77 7.93 -2.38 -0.02 1.75 16 47 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 48 H 0.01 0.41 6.69 -2.39 -0.02 0.39 16 49 H 0.05 2.47 6.07 -2.39 -0.01 2.46 16 50 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -73.51 383.15 1.89 -71.62 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -0.75 Total: 13.50 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 5.03 Total: -0.26 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -4.37 Total: -116.75 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.05 Total: -14.94 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -73.51 1.89 -71.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278623135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.845 kcal (2) G-P(sol) polarization free energy of solvation -73.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds