Wall clock time and date at job start Wed Apr 1 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47053 * 2 1 4 4 N 1.32154 * 120.53304 * 95.91854 * 3 2 1 5 5 C 1.31853 * 120.96802 * 180.02562 * 4 3 2 6 6 N 1.31885 * 122.09336 * 359.97438 * 5 4 3 7 7 C 1.32124 * 120.96820 * 0.02562 * 6 5 4 8 8 C 1.39931 * 120.53846 * 276.19922 * 3 2 1 9 9 C 1.47832 * 120.94022 * 359.97438 * 8 3 2 10 10 O 1.21550 * 120.00031 * 6.00886 * 9 8 3 11 11 N 1.34770 * 119.99781 * 186.00080 * 9 8 3 12 12 C 1.46508 * 120.00134 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47366 * 179.97438 * 12 11 9 14 14 N 1.46895 * 109.47377 * 179.97438 * 13 12 11 15 15 C 1.46846 * 110.99923 * 45.78574 * 14 13 12 16 16 C 1.53034 * 109.52496 * 185.83926 * 15 14 13 17 17 C 1.53119 * 109.28196 * 300.82925 * 16 15 14 18 18 N 1.46496 * 109.57714 * 177.59053 * 17 16 15 19 19 C 1.36935 * 120.00369 * 85.28458 * 18 17 16 20 20 H 1.07996 * 119.99872 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00471 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99627 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00338 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46729 * 90.00101 * 23 21 19 25 25 H 1.48503 * 109.47174 * 210.00073 * 23 21 19 26 26 H 1.48490 * 109.46992 * 330.00317 * 23 21 19 27 27 C 1.53119 * 109.16384 * 57.65010 * 17 16 15 28 28 C 1.46849 * 111.00406 * 170.00187 * 14 13 12 29 29 H 1.09007 * 109.47248 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46979 * 299.99537 * 1 2 3 31 31 H 1.08998 * 109.47578 * 59.99548 * 1 2 3 32 32 H 1.08999 * 109.46538 * 240.00666 * 2 1 3 33 33 H 1.08992 * 109.47166 * 120.00300 * 2 1 3 34 34 H 1.08003 * 118.95733 * 179.97438 * 5 4 3 35 35 H 1.08000 * 120.54067 * 179.97438 * 7 6 5 36 36 H 0.96998 * 120.00205 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.46872 * 300.00119 * 12 11 9 38 38 H 1.09005 * 109.47046 * 59.99927 * 12 11 9 39 39 H 1.09005 * 109.47267 * 300.00353 * 13 12 11 40 40 H 1.09005 * 109.47072 * 59.99974 * 13 12 11 41 41 H 1.08996 * 109.46515 * 305.85859 * 15 14 13 42 42 H 1.09007 * 109.45770 * 65.83130 * 15 14 13 43 43 H 1.09005 * 109.50727 * 180.88247 * 16 15 14 44 44 H 1.09000 * 109.50179 * 60.76782 * 16 15 14 45 45 H 1.09005 * 109.51913 * 297.74345 * 17 16 15 46 46 H 0.97003 * 120.00033 * 265.28331 * 18 17 16 47 47 H 0.96997 * 119.99364 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.50234 * 182.41153 * 27 17 16 49 49 H 1.08994 * 109.49866 * 62.28705 * 27 17 16 50 50 H 1.08999 * 109.45839 * 294.17518 * 28 14 13 51 51 H 1.09001 * 109.46052 * 54.15771 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3668 2.0147 1.1322 5 6 2.8068 3.2577 1.1422 6 7 2.9350 3.9645 0.0362 7 6 2.6235 3.4492 -1.1399 8 6 2.1466 2.1346 -1.1982 9 6 1.7796 1.5157 -2.4895 10 8 1.2700 0.4124 -2.5117 11 7 2.0100 2.1748 -3.6423 12 6 1.6458 1.5617 -4.9221 13 6 2.0102 2.5116 -6.0647 14 7 1.6456 1.8966 -7.3479 15 6 0.2984 1.3152 -7.2890 16 6 0.0100 0.5598 -8.5882 17 6 0.1175 1.5274 -9.7701 18 7 -0.1009 0.7989 -11.0223 19 6 -1.3742 0.5953 -11.4829 20 1 -2.2176 0.9714 -10.9229 21 6 -1.5812 -0.0954 -12.6691 22 7 -0.5533 -0.5542 -13.3513 23 14 -3.3183 -0.3737 -13.2971 24 1 -3.7139 0.7563 -14.1757 25 1 -3.3686 -1.6417 -14.0684 26 1 -4.2532 -0.4568 -12.1464 27 6 1.5139 2.1553 -9.7803 28 6 1.7587 2.8646 -8.4465 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.0705 3.7114 2.0862 35 1 2.7308 4.0345 -2.0412 36 1 2.4170 3.0551 -3.6246 37 1 2.1872 0.6233 -5.0425 38 1 0.5734 1.3673 -4.9397 39 1 1.4685 3.4498 -5.9440 40 1 3.0826 2.7064 -6.0473 41 1 0.2368 0.6260 -6.4468 42 1 -0.4353 2.1112 -7.1612 43 1 -0.9959 0.1416 -8.5505 44 1 0.7350 -0.2450 -8.7098 45 1 -0.6336 2.3109 -9.6689 46 1 0.6566 0.4607 -11.5251 47 1 -0.6979 -1.0366 -14.1803 48 1 1.5824 2.8771 -10.5941 49 1 2.2625 1.3756 -9.9206 50 1 1.0181 3.6532 -8.3132 51 1 2.7578 3.3004 -8.4451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279454046.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:32 Heat of formation + Delta-G solvation = 29.138685 kcal Electronic energy + Delta-G solvation = -29854.107929 eV Core-core repulsion = 25788.817448 eV Total energy + Delta-G solvation = -4065.290481 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.88480 -39.88739 -38.90490 -36.25226 -35.36503 -34.47140 -33.50902 -32.38615 -31.46749 -30.58902 -29.82043 -27.89124 -25.78493 -25.47724 -24.35637 -23.34969 -22.46146 -22.12986 -21.35960 -21.08567 -19.34153 -18.49426 -18.12182 -17.35494 -17.06900 -16.51465 -16.16489 -15.49190 -15.41332 -15.01587 -14.66567 -14.57836 -14.56649 -14.32005 -14.28077 -13.78001 -13.67508 -13.50721 -13.26199 -12.95114 -12.91498 -12.47725 -12.17928 -11.95745 -11.92353 -11.67193 -11.62928 -11.34400 -11.18945 -11.14677 -10.87955 -10.78327 -10.58537 -10.25830 -10.20666 -10.18584 -10.13827 -9.84421 -9.73158 -9.58908 -9.44676 -8.86094 -8.28926 -6.93615 -5.75305 -3.03781 -0.12230 0.44408 2.35744 2.52304 3.22470 3.43680 3.44170 3.46485 3.48945 3.50632 3.75239 3.93158 4.14522 4.28930 4.53647 4.59451 4.69438 4.79744 4.82345 5.02670 5.05444 5.15114 5.16763 5.30667 5.32402 5.39852 5.54490 5.57819 5.62578 5.64148 5.66409 5.68057 5.71552 5.82221 5.85974 5.90040 6.02792 6.05165 6.12638 6.26295 6.33139 6.47071 6.49843 6.64660 6.86896 6.92229 7.06964 7.19655 7.22243 7.43329 7.68066 7.70667 8.43523 9.54520 10.13225 10.47992 11.47374 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.001722 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.630308 B =16260.916005 C =17196.570799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 C 0.241 3.759 4 N -0.523 5.523 5 C 0.318 3.682 6 N -0.527 5.527 7 C 0.185 3.815 8 C -0.244 4.244 9 C 0.567 3.433 10 O -0.514 6.514 11 N -0.722 5.722 12 C 0.115 3.885 13 C 0.044 3.956 14 N -0.531 5.531 15 C 0.049 3.951 16 C -0.132 4.132 17 C 0.177 3.823 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.121 4.121 28 C 0.064 3.936 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.203 0.797 35 H 0.171 0.829 36 H 0.397 0.603 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.032 0.968 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.137 9.399 28.634 31.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 C 0.094 3.906 4 N -0.237 5.237 5 C 0.032 3.968 6 N -0.241 5.241 7 C 0.018 3.982 8 C -0.252 4.252 9 C 0.352 3.648 10 O -0.391 6.391 11 N -0.374 5.374 12 C -0.008 4.008 13 C -0.084 4.084 14 N -0.256 5.256 15 C -0.079 4.079 16 C -0.173 4.173 17 C 0.067 3.933 18 N -0.364 5.364 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.160 4.160 28 C -0.064 4.064 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.219 0.781 35 H 0.188 0.812 36 H 0.232 0.768 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.218 0.782 47 H 0.064 0.936 48 H 0.085 0.915 49 H 0.088 0.912 50 H 0.050 0.950 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.145 8.623 29.317 31.898 hybrid contribution -1.200 0.637 -1.144 1.776 sum 7.945 9.260 28.173 30.701 Atomic orbital electron populations 1.21572 0.92897 1.02835 1.01787 1.20870 0.97607 0.88749 1.05012 1.22089 0.85436 0.96691 0.86369 1.68443 1.13572 1.12084 1.29554 1.25285 0.87972 0.86356 0.97213 1.68459 1.18129 1.38394 0.99136 1.23470 0.87173 0.90855 0.96702 1.21625 1.09137 0.97977 0.96445 1.17686 0.78950 0.85237 0.82892 1.90788 1.42439 1.19076 1.86798 1.45833 1.63898 1.21559 1.06142 1.21639 1.01645 0.97171 0.80378 1.22229 1.01449 0.95462 0.89284 1.61995 1.27802 1.33767 1.02073 1.22322 0.87546 0.97984 1.00006 1.22315 1.01642 0.99715 0.93612 1.20235 0.93474 0.92579 0.86991 1.42415 1.06003 1.65793 1.22229 1.19234 0.84909 1.29115 1.03628 0.91310 1.24739 0.97121 1.01222 0.97948 1.69666 1.28502 1.42821 1.17122 0.86211 0.84255 0.77260 0.78601 1.21800 1.21785 1.20814 1.21861 0.99152 1.00186 0.94803 1.22062 1.00306 0.92813 0.91205 0.91360 0.93222 0.91819 0.86973 0.90022 0.78097 0.81212 0.76781 0.89863 0.90377 0.94440 0.90218 0.90832 0.95261 0.91691 0.91627 0.94125 0.78238 0.93554 0.91454 0.91235 0.95010 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.51 37.16 0.35 -0.77 16 2 C -0.08 -0.72 5.49 -27.88 -0.15 -0.88 16 3 C 0.24 2.16 6.12 -81.82 -0.50 1.66 16 4 N -0.52 -4.54 10.36 -10.48 -0.11 -4.65 16 5 C 0.32 2.23 12.27 -92.03 -1.13 1.10 16 6 N -0.53 -3.94 10.42 -14.24 -0.15 -4.09 16 7 C 0.19 1.19 10.80 -16.78 -0.18 1.01 16 8 C -0.24 -1.97 5.91 -104.69 -0.62 -2.59 16 9 C 0.57 5.13 7.73 -12.34 -0.10 5.03 16 10 O -0.51 -6.08 12.02 5.32 0.06 -6.02 16 11 N -0.72 -5.07 5.51 -61.25 -0.34 -5.41 16 12 C 0.11 1.02 4.92 -4.04 -0.02 1.00 16 13 C 0.04 0.39 5.39 -3.83 -0.02 0.37 16 14 N -0.53 -6.50 4.81 -234.67 -1.13 -7.63 16 15 C 0.05 0.67 4.85 -3.84 -0.02 0.66 16 16 C -0.13 -2.33 5.68 -26.65 -0.15 -2.49 16 17 C 0.18 3.46 2.84 -67.81 -0.19 3.27 16 18 N -0.72 -18.04 5.13 -53.31 -0.27 -18.32 16 19 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 23 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 27 C -0.12 -1.96 5.57 -26.65 -0.15 -2.10 16 28 C 0.06 0.81 5.42 -3.83 -0.02 0.79 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.63 6.88 -51.93 -0.36 0.27 16 32 H 0.11 1.08 5.94 -51.93 -0.31 0.77 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.20 0.70 8.06 -52.48 -0.42 0.28 16 35 H 0.17 0.51 6.58 -52.49 -0.35 0.17 16 36 H 0.40 1.62 6.64 -40.82 -0.27 1.35 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.80 6.21 -51.93 -0.32 0.47 16 39 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.93 5.81 -51.93 -0.30 0.63 16 42 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 46 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.07 0.76 8.12 -51.93 -0.42 0.33 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -33.03 404.02 -11.39 -44.42 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -8.11 Total: 6.84 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -3.14 Total: -1.18 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -1.27 Total: -67.55 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: 0.06 Total: -6.02 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.03 -11.39 -44.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279454046.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.560 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds