Wall clock time and date at job start Wed Apr 1 2020 06:13:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50705 * 109.47053 * 2 1
4 4 N 1.32154 * 120.53304 * 95.91854 * 3 2 1
5 5 C 1.31853 * 120.96802 * 180.02562 * 4 3 2
6 6 N 1.31885 * 122.09336 * 359.97438 * 5 4 3
7 7 C 1.32124 * 120.96820 * 0.02562 * 6 5 4
8 8 C 1.39931 * 120.53846 * 276.19922 * 3 2 1
9 9 C 1.47832 * 120.94022 * 359.97438 * 8 3 2
10 10 O 1.21550 * 120.00031 * 6.00886 * 9 8 3
11 11 N 1.34770 * 119.99781 * 186.00080 * 9 8 3
12 12 C 1.46508 * 120.00134 * 180.02562 * 11 9 8
13 13 C 1.52993 * 109.47366 * 179.97438 * 12 11 9
14 14 N 1.46895 * 109.47377 * 179.97438 * 13 12 11
15 15 C 1.46846 * 110.99923 * 45.78574 * 14 13 12
16 16 C 1.53034 * 109.52496 * 185.83926 * 15 14 13
17 17 C 1.53119 * 109.28196 * 300.82925 * 16 15 14
18 18 N 1.46496 * 109.57714 * 177.59053 * 17 16 15
19 19 C 1.36935 * 120.00369 * 85.28458 * 18 17 16
20 20 H 1.07996 * 119.99872 * 359.97438 * 19 18 17
21 21 C 1.38810 * 120.00471 * 180.02562 * 19 18 17
22 22 N 1.31628 * 119.99627 * 359.97438 * 21 19 18
23 23 Si 1.86800 * 120.00338 * 179.97438 * 21 19 18
24 24 H 1.48503 * 109.46729 * 90.00101 * 23 21 19
25 25 H 1.48503 * 109.47174 * 210.00073 * 23 21 19
26 26 H 1.48490 * 109.46992 * 330.00317 * 23 21 19
27 27 C 1.53119 * 109.16384 * 57.65010 * 17 16 15
28 28 C 1.46849 * 111.00406 * 170.00187 * 14 13 12
29 29 H 1.09007 * 109.47248 * 180.02562 * 1 2 3
30 30 H 1.09003 * 109.46979 * 299.99537 * 1 2 3
31 31 H 1.08998 * 109.47578 * 59.99548 * 1 2 3
32 32 H 1.08999 * 109.46538 * 240.00666 * 2 1 3
33 33 H 1.08992 * 109.47166 * 120.00300 * 2 1 3
34 34 H 1.08003 * 118.95733 * 179.97438 * 5 4 3
35 35 H 1.08000 * 120.54067 * 179.97438 * 7 6 5
36 36 H 0.96998 * 120.00205 * 0.02562 * 11 9 8
37 37 H 1.08999 * 109.46872 * 300.00119 * 12 11 9
38 38 H 1.09005 * 109.47046 * 59.99927 * 12 11 9
39 39 H 1.09005 * 109.47267 * 300.00353 * 13 12 11
40 40 H 1.09005 * 109.47072 * 59.99974 * 13 12 11
41 41 H 1.08996 * 109.46515 * 305.85859 * 15 14 13
42 42 H 1.09007 * 109.45770 * 65.83130 * 15 14 13
43 43 H 1.09005 * 109.50727 * 180.88247 * 16 15 14
44 44 H 1.09000 * 109.50179 * 60.76782 * 16 15 14
45 45 H 1.09005 * 109.51913 * 297.74345 * 17 16 15
46 46 H 0.97003 * 120.00033 * 265.28331 * 18 17 16
47 47 H 0.96997 * 119.99364 * 180.02562 * 22 21 19
48 48 H 1.08995 * 109.50234 * 182.41153 * 27 17 16
49 49 H 1.08994 * 109.49866 * 62.28705 * 27 17 16
50 50 H 1.08999 * 109.45839 * 294.17518 * 28 14 13
51 51 H 1.09001 * 109.46052 * 54.15771 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.3668 2.0147 1.1322
5 6 2.8068 3.2577 1.1422
6 7 2.9350 3.9645 0.0362
7 6 2.6235 3.4492 -1.1399
8 6 2.1466 2.1346 -1.1982
9 6 1.7796 1.5157 -2.4895
10 8 1.2700 0.4124 -2.5117
11 7 2.0100 2.1748 -3.6423
12 6 1.6458 1.5617 -4.9221
13 6 2.0102 2.5116 -6.0647
14 7 1.6456 1.8966 -7.3479
15 6 0.2984 1.3152 -7.2890
16 6 0.0100 0.5598 -8.5882
17 6 0.1175 1.5274 -9.7701
18 7 -0.1009 0.7989 -11.0223
19 6 -1.3742 0.5953 -11.4829
20 1 -2.2176 0.9714 -10.9229
21 6 -1.5812 -0.0954 -12.6691
22 7 -0.5533 -0.5542 -13.3513
23 14 -3.3183 -0.3737 -13.2971
24 1 -3.7139 0.7563 -14.1757
25 1 -3.3686 -1.6417 -14.0684
26 1 -4.2532 -0.4568 -12.1464
27 6 1.5139 2.1553 -9.7803
28 6 1.7587 2.8646 -8.4465
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8901
31 1 -0.3634 0.5139 -0.8899
32 1 1.8932 -0.5137 -0.8901
33 1 1.8933 -0.5138 0.8899
34 1 3.0705 3.7114 2.0862
35 1 2.7308 4.0345 -2.0412
36 1 2.4170 3.0551 -3.6246
37 1 2.1872 0.6233 -5.0425
38 1 0.5734 1.3673 -4.9397
39 1 1.4685 3.4498 -5.9440
40 1 3.0826 2.7064 -6.0473
41 1 0.2368 0.6260 -6.4468
42 1 -0.4353 2.1112 -7.1612
43 1 -0.9959 0.1416 -8.5505
44 1 0.7350 -0.2450 -8.7098
45 1 -0.6336 2.3109 -9.6689
46 1 0.6566 0.4607 -11.5251
47 1 -0.6979 -1.0366 -14.1803
48 1 1.5824 2.8771 -10.5941
49 1 2.2625 1.3756 -9.9206
50 1 1.0181 3.6532 -8.3132
51 1 2.7578 3.3004 -8.4451
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001279454046.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:13:31
Heat of formation + Delta-G solvation = 5.695200 kcal
Electronic energy + Delta-G solvation = -29855.124515 eV
Core-core repulsion = 25788.817448 eV
Total energy + Delta-G solvation = -4066.307067 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-42.45686 -40.63344 -39.97394 -37.24922 -36.35038 -35.50476 -34.26821 -33.84616
-32.30308 -31.75379 -31.31781 -29.00200 -26.60157 -26.05663 -25.84179 -24.64889
-23.52509 -22.96958 -22.17075 -22.05543 -20.72804 -19.11539 -19.07942 -18.71379
-17.88523 -17.45196 -16.86212 -16.73148 -16.21632 -16.08872 -15.87218 -15.45460
-15.40256 -15.24965 -15.17186 -15.10296 -14.92744 -14.48560 -14.33376 -14.11316
-13.95342 -13.55277 -13.12047 -12.98193 -12.86546 -12.79082 -12.67111 -12.56572
-12.51215 -12.19874 -12.16665 -12.05255 -12.01627 -11.75298 -11.72500 -11.49509
-11.15587 -10.86194 -10.84201 -10.79362 -10.40626 -10.12064 -9.23201 -8.98293
-7.93618 -5.21674 -0.67923 -0.11297 1.46305 1.47854 1.56181 1.71021
1.86558 2.56146 2.66050 2.89583 3.00780 3.04890 3.23508 3.39195
3.57127 3.71015 3.79965 3.84068 4.03929 4.10514 4.20433 4.22527
4.23945 4.35933 4.36664 4.38381 4.46089 4.52613 4.57843 4.71358
4.72029 4.77080 4.88232 4.95785 4.98830 4.99623 5.00798 5.07011
5.14124 5.18659 5.19907 5.27655 5.39601 5.45629 5.50528 5.62823
5.77963 6.11922 6.18432 6.29296 6.37919 6.89471 7.06637 7.34478
8.12249 8.35056 9.29933
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.020757 B = 0.001722 C = 0.001628
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1348.630308 B =16260.916005 C =17196.570799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.082 4.082
3 C 0.226 3.774
4 N -0.540 5.540
5 C 0.317 3.683
6 N -0.538 5.538
7 C 0.195 3.805
8 C -0.254 4.254
9 C 0.567 3.433
10 O -0.548 6.548
11 N -0.706 5.706
12 C 0.122 3.878
13 C 0.051 3.949
14 N -0.543 5.543
15 C 0.062 3.938
16 C -0.124 4.124
17 C 0.170 3.830
18 N -0.738 5.738
19 C -0.237 4.237
20 H 0.073 0.927
21 C -0.078 4.078
22 N -0.970 5.970
23 Si 0.971 3.029
24 H -0.287 1.287
25 H -0.296 1.296
26 H -0.271 1.271
27 C -0.114 4.114
28 C 0.072 3.928
29 H 0.072 0.928
30 H 0.052 0.948
31 H 0.047 0.953
32 H 0.099 0.901
33 H 0.087 0.913
34 H 0.232 0.768
35 H 0.206 0.794
36 H 0.415 0.585
37 H 0.066 0.934
38 H 0.064 0.936
39 H 0.057 0.943
40 H 0.102 0.898
41 H 0.084 0.916
42 H 0.036 0.964
43 H 0.043 0.957
44 H 0.047 0.953
45 H 0.035 0.965
46 H 0.372 0.628
47 H 0.250 0.750
48 H 0.063 0.937
49 H 0.057 0.943
50 H 0.041 0.959
51 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.668 11.771 30.473 34.068
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.120 4.120
3 C 0.080 3.920
4 N -0.254 5.254
5 C 0.031 3.969
6 N -0.251 5.251
7 C 0.027 3.973
8 C -0.261 4.261
9 C 0.353 3.647
10 O -0.427 6.427
11 N -0.359 5.359
12 C -0.002 4.002
13 C -0.077 4.077
14 N -0.269 5.269
15 C -0.066 4.066
16 C -0.164 4.164
17 C 0.062 3.938
18 N -0.377 5.377
19 C -0.369 4.369
20 H 0.091 0.909
21 C -0.270 4.270
22 N -0.621 5.621
23 Si 0.800 3.200
24 H -0.214 1.214
25 H -0.223 1.223
26 H -0.196 1.196
27 C -0.152 4.152
28 C -0.056 4.056
29 H 0.091 0.909
30 H 0.071 0.929
31 H 0.066 0.934
32 H 0.117 0.883
33 H 0.106 0.894
34 H 0.248 0.752
35 H 0.222 0.778
36 H 0.253 0.747
37 H 0.085 0.915
38 H 0.083 0.917
39 H 0.075 0.925
40 H 0.120 0.880
41 H 0.102 0.898
42 H 0.054 0.946
43 H 0.062 0.938
44 H 0.066 0.934
45 H 0.053 0.947
46 H 0.203 0.797
47 H 0.059 0.941
48 H 0.082 0.918
49 H 0.076 0.924
50 H 0.059 0.941
51 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 9.688 11.057 31.212 34.501
hybrid contribution -1.312 -0.051 -1.627 2.091
sum 8.376 11.006 29.585 32.658
Atomic orbital electron populations
1.21503 0.92971 1.02952 1.01036 1.20795 0.97524 0.89087 1.04599
1.22174 0.85824 0.96884 0.87092 1.68475 1.14460 1.13004 1.29495
1.25929 0.86727 0.85807 0.98390 1.68572 1.18570 1.38467 0.99535
1.24000 0.85373 0.90202 0.97677 1.21548 1.10244 0.98795 0.95544
1.17856 0.78428 0.84862 0.83572 1.90780 1.44043 1.20629 1.87275
1.45606 1.63306 1.22061 1.04949 1.21423 1.00572 0.96906 0.81287
1.22254 1.02977 0.95548 0.86882 1.61910 1.26524 1.34620 1.03853
1.22113 0.88895 0.98059 0.97572 1.22102 0.99888 0.99145 0.95287
1.20503 0.95560 0.92343 0.85376 1.42650 1.04726 1.66359 1.23998
1.19602 0.86164 1.27803 1.03343 0.90928 1.25542 1.00853 1.01968
0.98635 1.69824 1.30485 1.44270 1.17500 0.85176 0.80039 0.76708
0.78081 1.21368 1.22304 1.19594 1.21747 0.96273 0.99822 0.97407
1.21991 1.02222 0.92333 0.89011 0.90861 0.92886 0.93432 0.88286
0.89423 0.75186 0.77775 0.74724 0.91527 0.91738 0.92468 0.88008
0.89814 0.94565 0.93841 0.93418 0.94689 0.79680 0.94126 0.91816
0.92372 0.94090 0.88324
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.16 9.51 71.98 0.68 -1.47 16
2 C -0.08 -1.42 5.49 29.85 0.16 -1.26 16
3 C 0.23 3.90 6.12 42.92 0.26 4.16 16
4 N -0.54 -8.74 10.36 -187.06 -1.94 -10.68 16
5 C 0.32 3.79 12.27 180.84 2.22 6.01 16
6 N -0.54 -6.63 10.42 -198.98 -2.07 -8.71 16
7 C 0.19 1.96 10.80 85.07 0.92 2.88 16
8 C -0.25 -3.72 5.91 -19.91 -0.12 -3.84 16
9 C 0.57 9.57 7.73 86.78 0.67 10.24 16
10 O -0.55 -12.98 12.02 -3.87 -0.05 -13.03 16
11 N -0.71 -8.10 5.51 -465.99 -2.57 -10.67 16
12 C 0.12 1.90 4.92 86.38 0.43 2.33 16
13 C 0.05 0.69 5.39 86.30 0.46 1.16 16
14 N -0.54 -11.87 4.81 -896.37 -4.31 -16.18 16
15 C 0.06 1.60 4.85 86.32 0.42 2.02 16
16 C -0.12 -4.41 5.68 30.65 0.17 -4.24 16
17 C 0.17 6.68 2.84 45.07 0.13 6.81 16
18 N -0.74 -37.69 5.13 -322.57 -1.65 -39.34 16
19 C -0.24 -13.32 9.93 84.03 0.83 -12.48 16
20 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16
21 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16
22 N -0.97 -60.09 13.06 21.65 0.28 -59.81 16
23 Si 0.97 46.67 29.55 68.60 2.03 48.70 16
24 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16
25 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16
26 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16
27 C -0.11 -3.57 5.57 30.65 0.17 -3.40 16
28 C 0.07 1.61 5.42 86.33 0.47 2.07 16
29 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16
30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16
31 H 0.05 0.96 6.88 -2.39 -0.02 0.94 16
32 H 0.10 1.98 5.94 -2.39 -0.01 1.96 16
33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
34 H 0.23 1.02 8.06 -2.91 -0.02 1.00 16
35 H 0.21 0.38 6.58 -2.91 -0.02 0.36 16
36 H 0.41 1.75 6.64 -92.71 -0.62 1.14 16
37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
38 H 0.06 1.21 6.21 -2.38 -0.01 1.20 16
39 H 0.06 0.62 8.08 -2.38 -0.02 0.60 16
40 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16
41 H 0.08 2.03 5.81 -2.39 -0.01 2.01 16
42 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16
43 H 0.04 1.69 8.14 -2.38 -0.02 1.68 16
44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16
45 H 0.04 1.41 8.08 -2.38 -0.02 1.39 16
46 H 0.37 20.48 7.80 -92.71 -0.72 19.76 16
47 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16
48 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
49 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
50 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16
51 H 0.10 1.70 8.12 -2.39 -0.02 1.68 16
Total: -1.00 -73.67 404.02 -2.31 -75.98
By element:
Atomic # 1 Polarization: 27.19 SS G_CDS: -0.39 Total: 26.81 kcal
Atomic # 6 Polarization: -1.43 SS G_CDS: 8.35 Total: 6.92 kcal
Atomic # 7 Polarization: -133.12 SS G_CDS: -12.26 Total: -145.38 kcal
Atomic # 8 Polarization: -12.98 SS G_CDS: -0.05 Total: -13.03 kcal
Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal
Total: -73.67 -2.31 -75.98 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001279454046.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.676 kcal
(2) G-P(sol) polarization free energy of solvation -73.670 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.006 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.311 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.981 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds