Wall clock time and date at job start Wed Apr 1 2020 06:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47053 * 2 1 4 4 N 1.32154 * 120.53304 * 95.91854 * 3 2 1 5 5 C 1.31853 * 120.96802 * 180.02562 * 4 3 2 6 6 N 1.31885 * 122.09336 * 359.97438 * 5 4 3 7 7 C 1.32124 * 120.96820 * 0.02562 * 6 5 4 8 8 C 1.39931 * 120.53846 * 276.19922 * 3 2 1 9 9 C 1.47832 * 120.94022 * 359.97438 * 8 3 2 10 10 O 1.21550 * 120.00031 * 6.00886 * 9 8 3 11 11 N 1.34770 * 119.99781 * 186.00080 * 9 8 3 12 12 C 1.46508 * 120.00134 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47366 * 179.97438 * 12 11 9 14 14 N 1.46895 * 109.47377 * 179.97438 * 13 12 11 15 15 C 1.46846 * 110.99923 * 45.78574 * 14 13 12 16 16 C 1.53034 * 109.52496 * 185.83926 * 15 14 13 17 17 C 1.53119 * 109.28196 * 300.82925 * 16 15 14 18 18 N 1.46496 * 109.57714 * 177.59053 * 17 16 15 19 19 C 1.36935 * 120.00369 * 85.28458 * 18 17 16 20 20 H 1.07996 * 119.99872 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00471 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99627 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00338 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46729 * 90.00101 * 23 21 19 25 25 H 1.48503 * 109.47174 * 210.00073 * 23 21 19 26 26 H 1.48490 * 109.46992 * 330.00317 * 23 21 19 27 27 C 1.53119 * 109.16384 * 57.65010 * 17 16 15 28 28 C 1.46849 * 111.00406 * 170.00187 * 14 13 12 29 29 H 1.09007 * 109.47248 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46979 * 299.99537 * 1 2 3 31 31 H 1.08998 * 109.47578 * 59.99548 * 1 2 3 32 32 H 1.08999 * 109.46538 * 240.00666 * 2 1 3 33 33 H 1.08992 * 109.47166 * 120.00300 * 2 1 3 34 34 H 1.08003 * 118.95733 * 179.97438 * 5 4 3 35 35 H 1.08000 * 120.54067 * 179.97438 * 7 6 5 36 36 H 0.96998 * 120.00205 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.46872 * 300.00119 * 12 11 9 38 38 H 1.09005 * 109.47046 * 59.99927 * 12 11 9 39 39 H 1.09005 * 109.47267 * 300.00353 * 13 12 11 40 40 H 1.09005 * 109.47072 * 59.99974 * 13 12 11 41 41 H 1.08996 * 109.46515 * 305.85859 * 15 14 13 42 42 H 1.09007 * 109.45770 * 65.83130 * 15 14 13 43 43 H 1.09005 * 109.50727 * 180.88247 * 16 15 14 44 44 H 1.09000 * 109.50179 * 60.76782 * 16 15 14 45 45 H 1.09005 * 109.51913 * 297.74345 * 17 16 15 46 46 H 0.97003 * 120.00033 * 265.28331 * 18 17 16 47 47 H 0.96997 * 119.99364 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.50234 * 182.41153 * 27 17 16 49 49 H 1.08994 * 109.49866 * 62.28705 * 27 17 16 50 50 H 1.08999 * 109.45839 * 294.17518 * 28 14 13 51 51 H 1.09001 * 109.46052 * 54.15771 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3668 2.0147 1.1322 5 6 2.8068 3.2577 1.1422 6 7 2.9350 3.9645 0.0362 7 6 2.6235 3.4492 -1.1399 8 6 2.1466 2.1346 -1.1982 9 6 1.7796 1.5157 -2.4895 10 8 1.2700 0.4124 -2.5117 11 7 2.0100 2.1748 -3.6423 12 6 1.6458 1.5617 -4.9221 13 6 2.0102 2.5116 -6.0647 14 7 1.6456 1.8966 -7.3479 15 6 0.2984 1.3152 -7.2890 16 6 0.0100 0.5598 -8.5882 17 6 0.1175 1.5274 -9.7701 18 7 -0.1009 0.7989 -11.0223 19 6 -1.3742 0.5953 -11.4829 20 1 -2.2176 0.9714 -10.9229 21 6 -1.5812 -0.0954 -12.6691 22 7 -0.5533 -0.5542 -13.3513 23 14 -3.3183 -0.3737 -13.2971 24 1 -3.7139 0.7563 -14.1757 25 1 -3.3686 -1.6417 -14.0684 26 1 -4.2532 -0.4568 -12.1464 27 6 1.5139 2.1553 -9.7803 28 6 1.7587 2.8646 -8.4465 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.0705 3.7114 2.0862 35 1 2.7308 4.0345 -2.0412 36 1 2.4170 3.0551 -3.6246 37 1 2.1872 0.6233 -5.0425 38 1 0.5734 1.3673 -4.9397 39 1 1.4685 3.4498 -5.9440 40 1 3.0826 2.7064 -6.0473 41 1 0.2368 0.6260 -6.4468 42 1 -0.4353 2.1112 -7.1612 43 1 -0.9959 0.1416 -8.5505 44 1 0.7350 -0.2450 -8.7098 45 1 -0.6336 2.3109 -9.6689 46 1 0.6566 0.4607 -11.5251 47 1 -0.6979 -1.0366 -14.1803 48 1 1.5824 2.8771 -10.5941 49 1 2.2625 1.3756 -9.9206 50 1 1.0181 3.6532 -8.3132 51 1 2.7578 3.3004 -8.4451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279454046.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:31 Heat of formation + Delta-G solvation = 5.695200 kcal Electronic energy + Delta-G solvation = -29855.124515 eV Core-core repulsion = 25788.817448 eV Total energy + Delta-G solvation = -4066.307067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.45686 -40.63344 -39.97394 -37.24922 -36.35038 -35.50476 -34.26821 -33.84616 -32.30308 -31.75379 -31.31781 -29.00200 -26.60157 -26.05663 -25.84179 -24.64889 -23.52509 -22.96958 -22.17075 -22.05543 -20.72804 -19.11539 -19.07942 -18.71379 -17.88523 -17.45196 -16.86212 -16.73148 -16.21632 -16.08872 -15.87218 -15.45460 -15.40256 -15.24965 -15.17186 -15.10296 -14.92744 -14.48560 -14.33376 -14.11316 -13.95342 -13.55277 -13.12047 -12.98193 -12.86546 -12.79082 -12.67111 -12.56572 -12.51215 -12.19874 -12.16665 -12.05255 -12.01627 -11.75298 -11.72500 -11.49509 -11.15587 -10.86194 -10.84201 -10.79362 -10.40626 -10.12064 -9.23201 -8.98293 -7.93618 -5.21674 -0.67923 -0.11297 1.46305 1.47854 1.56181 1.71021 1.86558 2.56146 2.66050 2.89583 3.00780 3.04890 3.23508 3.39195 3.57127 3.71015 3.79965 3.84068 4.03929 4.10514 4.20433 4.22527 4.23945 4.35933 4.36664 4.38381 4.46089 4.52613 4.57843 4.71358 4.72029 4.77080 4.88232 4.95785 4.98830 4.99623 5.00798 5.07011 5.14124 5.18659 5.19907 5.27655 5.39601 5.45629 5.50528 5.62823 5.77963 6.11922 6.18432 6.29296 6.37919 6.89471 7.06637 7.34478 8.12249 8.35056 9.29933 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.001722 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.630308 B =16260.916005 C =17196.570799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C 0.226 3.774 4 N -0.540 5.540 5 C 0.317 3.683 6 N -0.538 5.538 7 C 0.195 3.805 8 C -0.254 4.254 9 C 0.567 3.433 10 O -0.548 6.548 11 N -0.706 5.706 12 C 0.122 3.878 13 C 0.051 3.949 14 N -0.543 5.543 15 C 0.062 3.938 16 C -0.124 4.124 17 C 0.170 3.830 18 N -0.738 5.738 19 C -0.237 4.237 20 H 0.073 0.927 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.271 1.271 27 C -0.114 4.114 28 C 0.072 3.928 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.232 0.768 35 H 0.206 0.794 36 H 0.415 0.585 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.036 0.964 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.035 0.965 46 H 0.372 0.628 47 H 0.250 0.750 48 H 0.063 0.937 49 H 0.057 0.943 50 H 0.041 0.959 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 11.771 30.473 34.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 C 0.080 3.920 4 N -0.254 5.254 5 C 0.031 3.969 6 N -0.251 5.251 7 C 0.027 3.973 8 C -0.261 4.261 9 C 0.353 3.647 10 O -0.427 6.427 11 N -0.359 5.359 12 C -0.002 4.002 13 C -0.077 4.077 14 N -0.269 5.269 15 C -0.066 4.066 16 C -0.164 4.164 17 C 0.062 3.938 18 N -0.377 5.377 19 C -0.369 4.369 20 H 0.091 0.909 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.800 3.200 24 H -0.214 1.214 25 H -0.223 1.223 26 H -0.196 1.196 27 C -0.152 4.152 28 C -0.056 4.056 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.248 0.752 35 H 0.222 0.778 36 H 0.253 0.747 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.059 0.941 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.688 11.057 31.212 34.501 hybrid contribution -1.312 -0.051 -1.627 2.091 sum 8.376 11.006 29.585 32.658 Atomic orbital electron populations 1.21503 0.92971 1.02952 1.01036 1.20795 0.97524 0.89087 1.04599 1.22174 0.85824 0.96884 0.87092 1.68475 1.14460 1.13004 1.29495 1.25929 0.86727 0.85807 0.98390 1.68572 1.18570 1.38467 0.99535 1.24000 0.85373 0.90202 0.97677 1.21548 1.10244 0.98795 0.95544 1.17856 0.78428 0.84862 0.83572 1.90780 1.44043 1.20629 1.87275 1.45606 1.63306 1.22061 1.04949 1.21423 1.00572 0.96906 0.81287 1.22254 1.02977 0.95548 0.86882 1.61910 1.26524 1.34620 1.03853 1.22113 0.88895 0.98059 0.97572 1.22102 0.99888 0.99145 0.95287 1.20503 0.95560 0.92343 0.85376 1.42650 1.04726 1.66359 1.23998 1.19602 0.86164 1.27803 1.03343 0.90928 1.25542 1.00853 1.01968 0.98635 1.69824 1.30485 1.44270 1.17500 0.85176 0.80039 0.76708 0.78081 1.21368 1.22304 1.19594 1.21747 0.96273 0.99822 0.97407 1.21991 1.02222 0.92333 0.89011 0.90861 0.92886 0.93432 0.88286 0.89423 0.75186 0.77775 0.74724 0.91527 0.91738 0.92468 0.88008 0.89814 0.94565 0.93841 0.93418 0.94689 0.79680 0.94126 0.91816 0.92372 0.94090 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.51 71.98 0.68 -1.47 16 2 C -0.08 -1.42 5.49 29.85 0.16 -1.26 16 3 C 0.23 3.90 6.12 42.92 0.26 4.16 16 4 N -0.54 -8.74 10.36 -187.06 -1.94 -10.68 16 5 C 0.32 3.79 12.27 180.84 2.22 6.01 16 6 N -0.54 -6.63 10.42 -198.98 -2.07 -8.71 16 7 C 0.19 1.96 10.80 85.07 0.92 2.88 16 8 C -0.25 -3.72 5.91 -19.91 -0.12 -3.84 16 9 C 0.57 9.57 7.73 86.78 0.67 10.24 16 10 O -0.55 -12.98 12.02 -3.87 -0.05 -13.03 16 11 N -0.71 -8.10 5.51 -465.99 -2.57 -10.67 16 12 C 0.12 1.90 4.92 86.38 0.43 2.33 16 13 C 0.05 0.69 5.39 86.30 0.46 1.16 16 14 N -0.54 -11.87 4.81 -896.37 -4.31 -16.18 16 15 C 0.06 1.60 4.85 86.32 0.42 2.02 16 16 C -0.12 -4.41 5.68 30.65 0.17 -4.24 16 17 C 0.17 6.68 2.84 45.07 0.13 6.81 16 18 N -0.74 -37.69 5.13 -322.57 -1.65 -39.34 16 19 C -0.24 -13.32 9.93 84.03 0.83 -12.48 16 20 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 21 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 22 N -0.97 -60.09 13.06 21.65 0.28 -59.81 16 23 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 26 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 27 C -0.11 -3.57 5.57 30.65 0.17 -3.40 16 28 C 0.07 1.61 5.42 86.33 0.47 2.07 16 29 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.96 6.88 -2.39 -0.02 0.94 16 32 H 0.10 1.98 5.94 -2.39 -0.01 1.96 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.23 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.21 0.38 6.58 -2.91 -0.02 0.36 16 36 H 0.41 1.75 6.64 -92.71 -0.62 1.14 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.21 6.21 -2.38 -0.01 1.20 16 39 H 0.06 0.62 8.08 -2.38 -0.02 0.60 16 40 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.08 2.03 5.81 -2.39 -0.01 2.01 16 42 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.04 1.69 8.14 -2.38 -0.02 1.68 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.04 1.41 8.08 -2.38 -0.02 1.39 16 46 H 0.37 20.48 7.80 -92.71 -0.72 19.76 16 47 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 48 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.10 1.70 8.12 -2.39 -0.02 1.68 16 Total: -1.00 -73.67 404.02 -2.31 -75.98 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.39 Total: 26.81 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 8.35 Total: 6.92 kcal Atomic # 7 Polarization: -133.12 SS G_CDS: -12.26 Total: -145.38 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.05 Total: -13.03 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -73.67 -2.31 -75.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279454046.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.676 kcal (2) G-P(sol) polarization free energy of solvation -73.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds