Wall clock time and date at job start Wed Apr 1 2020 04:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.45927 * 2 1 4 4 C 1.36934 * 119.99834 * 60.02331 * 3 2 1 5 5 H 1.07994 * 120.00491 * 0.02562 * 4 3 2 6 6 C 1.38815 * 119.99294 * 179.97438 * 4 3 2 7 7 N 1.31610 * 120.00499 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99599 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47174 * 60.00106 * 8 6 4 10 10 H 1.48504 * 109.47339 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47272 * 300.00300 * 8 6 4 12 12 C 1.53032 * 109.46462 * 240.02546 * 2 1 3 13 13 C 1.53192 * 109.31686 * 178.63024 * 12 2 1 14 14 N 1.46930 * 108.77693 * 54.63340 * 13 12 2 15 15 C 1.34770 * 120.63101 * 126.36803 * 14 13 12 16 16 O 1.21284 * 120.00048 * 4.49553 * 15 14 13 17 17 C 1.50698 * 120.00012 * 184.49415 * 15 14 13 18 18 H 1.09005 * 107.87879 * 327.94447 * 17 15 14 19 19 C 1.50950 * 108.00125 * 211.41358 * 17 15 14 20 20 C 1.53675 * 110.96625 * 165.71761 * 19 17 15 21 21 C 1.51883 * 106.89633 * 79.10382 * 20 19 17 22 22 N 1.29893 * 127.81429 * 114.76349 * 21 20 19 23 23 N 1.29043 * 109.22079 * 180.10445 * 22 21 20 24 24 C 1.30976 * 109.70558 * 0.33755 * 23 22 21 25 25 N 1.34598 * 124.56401 * 294.93941 * 21 20 19 26 26 C 1.47499 * 125.04122 * 359.44073 * 25 21 20 27 27 C 1.50862 * 108.02964 * 84.49599 * 17 15 14 28 28 C 1.46925 * 118.73540 * 306.64860 * 14 13 12 29 29 C 1.52763 * 109.01188 * 53.30567 * 28 14 13 30 30 H 1.08997 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47279 * 299.97586 * 1 2 3 32 32 H 1.09001 * 109.47076 * 59.97555 * 1 2 3 33 33 H 0.96998 * 119.99515 * 240.02254 * 3 2 1 34 34 H 0.96999 * 120.00529 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.49879 * 58.67339 * 12 2 1 36 36 H 1.09003 * 109.50077 * 298.57933 * 12 2 1 37 37 H 1.09006 * 109.58400 * 294.84466 * 13 12 2 38 38 H 1.09003 * 109.70361 * 174.49283 * 13 12 2 39 39 H 1.09004 * 109.18101 * 286.10463 * 19 17 15 40 40 H 1.09002 * 109.17993 * 45.38759 * 19 17 15 41 41 H 1.09003 * 109.96480 * 198.45026 * 20 19 17 42 42 H 1.09001 * 109.96603 * 319.66626 * 20 19 17 43 43 H 1.07998 * 126.60846 * 179.78019 * 24 23 22 44 44 H 1.09007 * 109.92993 * 185.38650 * 26 25 21 45 45 H 1.08997 * 109.93267 * 306.59513 * 26 25 21 46 46 H 1.09002 * 109.14513 * 73.96579 * 27 17 15 47 47 H 1.09001 * 109.10215 * 314.78274 * 27 17 15 48 48 H 1.08995 * 109.58574 * 173.14490 * 28 14 13 49 49 H 1.09003 * 109.58480 * 293.56809 * 28 14 13 50 50 H 1.08996 * 109.56425 * 185.55516 * 29 28 14 51 51 H 1.08994 * 109.35557 * 65.49808 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6874 2.2243 1.0273 5 1 1.0673 1.8708 1.8376 6 6 2.1504 3.5330 1.0274 7 7 2.9074 3.9634 0.0406 8 14 1.6988 4.6832 2.4284 9 1 2.2017 4.1245 3.7092 10 1 2.3132 6.0146 2.1934 11 1 0.2221 4.8249 2.4961 12 6 2.0399 -0.7209 -1.2499 13 6 3.5714 -0.6890 -1.2638 14 7 4.0677 -1.2493 0.0006 15 6 4.9609 -2.2584 0.0008 16 8 5.4245 -2.6582 -1.0463 17 6 5.3838 -2.8901 1.3020 18 1 5.3583 -2.1191 2.0721 19 6 6.8125 -3.3540 1.1527 20 6 7.4298 -3.6825 2.5211 21 6 6.9204 -5.0577 2.9165 22 7 7.6085 -6.1492 3.0659 23 7 6.8150 -7.1085 3.4053 24 6 5.5863 -6.6607 3.4775 25 7 5.6321 -5.3497 3.1746 26 6 4.5187 -4.3835 3.1262 27 6 4.3659 -3.9437 1.6621 28 6 3.5668 -0.6926 1.2646 29 6 2.0395 -0.7207 1.2503 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8901 32 1 -0.3633 0.5142 -0.8898 33 1 2.5754 1.6988 -0.7277 34 1 3.2306 4.8780 0.0405 35 1 1.6575 -0.2209 -2.1397 36 1 1.6977 -1.7557 -1.2381 37 1 3.9146 0.3405 -1.3670 38 1 3.9438 -1.2836 -2.0981 39 1 6.8359 -4.2455 0.5259 40 1 7.3969 -2.5665 0.6769 41 1 8.5171 -3.6959 2.4454 42 1 7.1173 -2.9424 3.2577 43 1 4.7067 -7.2320 3.7349 44 1 3.5994 -4.8584 3.4693 45 1 4.7480 -3.5206 3.7514 46 1 4.5018 -4.8087 1.0129 47 1 3.3651 -3.5386 1.5129 48 1 3.9341 -1.2910 2.0984 49 1 3.9095 0.3366 1.3719 50 1 1.6568 -0.2205 2.1399 51 1 1.6973 -1.7555 1.2385 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281507867.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:04 Heat of formation + Delta-G solvation = 56.897738 kcal Electronic energy + Delta-G solvation = -32376.897086 eV Core-core repulsion = 28312.810328 eV Total energy + Delta-G solvation = -4064.086758 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.50214 -40.56366 -38.33910 -37.00930 -34.64566 -34.44697 -32.72115 -32.25584 -30.80853 -30.12313 -29.17146 -28.08505 -27.01179 -24.67296 -24.10812 -23.16279 -23.03290 -22.63481 -21.40470 -20.50930 -19.46437 -18.21691 -17.87375 -17.20744 -17.11678 -16.19573 -15.93969 -15.48864 -15.30114 -14.88466 -14.82013 -14.37987 -14.17615 -14.03822 -13.83712 -13.63364 -13.57507 -13.19406 -12.95604 -12.65638 -12.55674 -12.31093 -12.21984 -11.98900 -11.65537 -11.59320 -11.40279 -11.33476 -11.29521 -11.10611 -10.97132 -10.88439 -10.83158 -10.54357 -10.48320 -10.40038 -10.34930 -9.78184 -9.65193 -9.51430 -9.35509 -9.03878 -8.34280 -7.07888 -5.87606 -3.16751 1.65690 2.22314 2.66807 2.70928 3.10511 3.33218 3.38851 3.41003 3.92138 4.08736 4.14340 4.16808 4.38392 4.47653 4.55680 4.66632 4.74383 4.87090 4.92631 5.05247 5.13009 5.17486 5.24318 5.30864 5.32603 5.45316 5.46132 5.49142 5.57573 5.62728 5.68383 5.75481 5.76844 5.90966 5.92545 5.95038 6.01513 6.05107 6.16066 6.28981 6.32267 6.39073 6.42215 6.61466 6.62717 6.75330 6.88688 6.95900 7.59030 7.62358 8.27274 8.30318 8.54905 9.42051 9.98444 10.33566 11.34628 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.002834 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.061228 B = 9878.658883 C =10247.700453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.198 3.802 3 N -0.716 5.716 4 C -0.236 4.236 5 H 0.070 0.930 6 C -0.010 4.010 7 N -0.931 5.931 8 Si 0.902 3.098 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.287 1.287 12 C -0.129 4.129 13 C 0.115 3.885 14 N -0.596 5.596 15 C 0.513 3.487 16 O -0.550 6.550 17 C -0.110 4.110 18 H 0.096 0.904 19 C -0.101 4.101 20 C -0.033 4.033 21 C 0.181 3.819 22 N -0.297 5.297 23 N -0.305 5.305 24 C 0.147 3.853 25 N -0.470 5.470 26 C 0.108 3.892 27 C -0.126 4.126 28 C 0.111 3.889 29 C -0.134 4.134 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.218 0.782 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.068 0.932 49 H 0.092 0.908 50 H 0.076 0.924 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 -15.157 5.656 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.107 3.893 3 N -0.359 5.359 4 C -0.367 4.367 5 H 0.087 0.913 6 C -0.206 4.206 7 N -0.579 5.579 8 Si 0.733 3.267 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.214 1.214 12 C -0.167 4.167 13 C -0.007 4.007 14 N -0.328 5.328 15 C 0.300 3.700 16 O -0.429 6.429 17 C -0.132 4.132 18 H 0.114 0.886 19 C -0.140 4.140 20 C -0.072 4.072 21 C -0.087 4.087 22 N -0.137 5.137 23 N -0.144 5.144 24 C -0.141 4.141 25 N -0.160 5.160 26 C -0.015 4.015 27 C -0.164 4.164 28 C -0.011 4.011 29 C -0.175 4.175 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.219 0.781 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.234 0.766 44 H 0.127 0.873 45 H 0.119 0.881 46 H 0.099 0.901 47 H 0.115 0.885 48 H 0.086 0.914 49 H 0.110 0.890 50 H 0.094 0.906 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.904 -16.202 5.285 17.148 hybrid contribution -1.569 1.799 0.632 2.470 sum 0.334 -14.403 5.917 15.574 Atomic orbital electron populations 1.22227 0.97612 0.98954 1.02206 1.19512 0.92113 0.86312 0.91391 1.42507 1.60669 1.05702 1.26989 1.19039 1.25714 0.91712 1.00213 0.91256 1.24700 1.00481 0.97353 0.98098 1.69628 1.39019 1.16957 1.32279 0.86366 0.77864 0.80609 0.81874 1.21346 1.21799 1.21399 1.22081 0.94926 1.00262 0.99457 1.21578 0.93969 0.99588 0.85561 1.48134 1.42220 1.34094 1.08350 1.20469 0.79083 0.79670 0.90754 1.90680 1.55317 1.63230 1.33625 1.20716 0.96211 0.98910 0.97326 0.88648 1.21170 0.93293 1.03508 0.96017 1.20600 1.02330 0.87112 0.97195 1.24901 0.81453 0.99481 1.02847 1.74242 1.25639 0.96053 1.17720 1.74527 0.98758 1.23349 1.17810 1.26324 1.00411 0.82749 1.04591 1.46329 1.09338 1.09912 1.50471 1.22493 0.88330 0.92255 0.98394 1.21591 1.00174 0.99671 0.94957 1.21748 0.95284 1.00362 0.83708 1.22241 0.94580 0.99059 1.01601 0.94654 0.92538 0.93114 0.78112 0.93424 0.90758 0.92073 0.90432 0.89987 0.90427 0.89463 0.87486 0.89165 0.76609 0.87310 0.88051 0.90108 0.88543 0.91360 0.89010 0.90553 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.44 37.16 0.31 -2.08 16 2 C 0.20 3.22 0.74 -131.78 -0.10 3.13 16 3 N -0.72 -15.05 4.14 -47.19 -0.20 -15.24 16 4 C -0.24 -5.61 8.68 -15.06 -0.13 -5.74 16 5 H 0.07 1.60 6.70 -52.49 -0.35 1.25 16 6 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 7 N -0.93 -25.85 13.06 55.49 0.72 -25.13 16 8 Si 0.90 20.63 29.55 -169.99 -5.02 15.61 16 9 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 C -0.13 -1.87 4.96 -26.62 -0.13 -2.01 16 13 C 0.12 1.76 6.15 -3.71 -0.02 1.74 16 14 N -0.60 -8.28 2.98 -173.03 -0.52 -8.80 16 15 C 0.51 6.96 6.38 -10.99 -0.07 6.89 16 16 O -0.55 -9.46 15.71 5.55 0.09 -9.37 16 17 C -0.11 -1.04 1.29 -93.88 -0.12 -1.16 16 18 H 0.10 0.76 5.54 -51.93 -0.29 0.47 16 19 C -0.10 -0.99 4.33 -27.41 -0.12 -1.11 16 20 C -0.03 -0.27 6.02 -26.95 -0.16 -0.44 16 21 C 0.18 1.97 7.03 -155.75 -1.09 0.87 16 22 N -0.30 -4.19 12.23 32.84 0.40 -3.79 16 23 N -0.31 -4.12 12.25 29.60 0.36 -3.76 16 24 C 0.15 1.36 12.83 -90.34 -1.16 0.20 16 25 N -0.47 -4.03 2.72 -114.24 -0.31 -4.34 16 26 C 0.11 0.58 6.53 -3.17 -0.02 0.56 16 27 C -0.13 -0.94 4.74 -27.48 -0.13 -1.07 16 28 C 0.11 1.47 5.80 -3.93 -0.02 1.45 16 29 C -0.13 -1.86 4.69 -26.83 -0.13 -1.99 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.96 7.27 -51.93 -0.38 0.59 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.38 8.92 6.46 -40.82 -0.26 8.66 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.35 6.94 -51.93 -0.36 0.99 16 38 H 0.08 1.27 7.03 -51.93 -0.37 0.91 16 39 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 40 H 0.09 0.90 7.96 -51.93 -0.41 0.49 16 41 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.57 7.89 -51.93 -0.41 0.17 16 43 H 0.22 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.11 0.31 8.13 -51.93 -0.42 -0.11 16 45 H 0.10 0.43 7.87 -51.93 -0.41 0.02 16 46 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 47 H 0.10 0.69 7.80 -51.93 -0.40 0.28 16 48 H 0.07 0.67 5.23 -51.93 -0.27 0.40 16 49 H 0.09 1.55 7.74 -51.93 -0.40 1.15 16 50 H 0.08 1.14 7.31 -51.93 -0.38 0.76 16 51 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -32.67 389.15 -9.84 -42.51 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -8.04 Total: 7.56 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -3.19 Total: -1.11 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.47 Total: -61.06 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.67 -9.84 -42.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281507867.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.405 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds