Wall clock time and date at job start Wed Apr 1 2020 04:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.45927 * 2 1 4 4 C 1.36934 * 119.99834 * 60.02331 * 3 2 1 5 5 H 1.07994 * 120.00491 * 0.02562 * 4 3 2 6 6 C 1.38815 * 119.99294 * 179.97438 * 4 3 2 7 7 N 1.31610 * 120.00499 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99599 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47174 * 60.00106 * 8 6 4 10 10 H 1.48504 * 109.47339 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47272 * 300.00300 * 8 6 4 12 12 C 1.53032 * 109.46462 * 240.02546 * 2 1 3 13 13 C 1.53192 * 109.31686 * 178.63024 * 12 2 1 14 14 N 1.46930 * 108.77693 * 54.63340 * 13 12 2 15 15 C 1.34770 * 120.63101 * 126.36803 * 14 13 12 16 16 O 1.21284 * 120.00048 * 4.49553 * 15 14 13 17 17 C 1.50698 * 120.00012 * 184.49415 * 15 14 13 18 18 H 1.09005 * 107.87879 * 327.94447 * 17 15 14 19 19 C 1.50950 * 108.00125 * 211.41358 * 17 15 14 20 20 C 1.53675 * 110.96625 * 165.71761 * 19 17 15 21 21 C 1.51883 * 106.89633 * 79.10382 * 20 19 17 22 22 N 1.29893 * 127.81429 * 114.76349 * 21 20 19 23 23 N 1.29043 * 109.22079 * 180.10445 * 22 21 20 24 24 C 1.30976 * 109.70558 * 0.33755 * 23 22 21 25 25 N 1.34598 * 124.56401 * 294.93941 * 21 20 19 26 26 C 1.47499 * 125.04122 * 359.44073 * 25 21 20 27 27 C 1.50862 * 108.02964 * 84.49599 * 17 15 14 28 28 C 1.46925 * 118.73540 * 306.64860 * 14 13 12 29 29 C 1.52763 * 109.01188 * 53.30567 * 28 14 13 30 30 H 1.08997 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47279 * 299.97586 * 1 2 3 32 32 H 1.09001 * 109.47076 * 59.97555 * 1 2 3 33 33 H 0.96998 * 119.99515 * 240.02254 * 3 2 1 34 34 H 0.96999 * 120.00529 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.49879 * 58.67339 * 12 2 1 36 36 H 1.09003 * 109.50077 * 298.57933 * 12 2 1 37 37 H 1.09006 * 109.58400 * 294.84466 * 13 12 2 38 38 H 1.09003 * 109.70361 * 174.49283 * 13 12 2 39 39 H 1.09004 * 109.18101 * 286.10463 * 19 17 15 40 40 H 1.09002 * 109.17993 * 45.38759 * 19 17 15 41 41 H 1.09003 * 109.96480 * 198.45026 * 20 19 17 42 42 H 1.09001 * 109.96603 * 319.66626 * 20 19 17 43 43 H 1.07998 * 126.60846 * 179.78019 * 24 23 22 44 44 H 1.09007 * 109.92993 * 185.38650 * 26 25 21 45 45 H 1.08997 * 109.93267 * 306.59513 * 26 25 21 46 46 H 1.09002 * 109.14513 * 73.96579 * 27 17 15 47 47 H 1.09001 * 109.10215 * 314.78274 * 27 17 15 48 48 H 1.08995 * 109.58574 * 173.14490 * 28 14 13 49 49 H 1.09003 * 109.58480 * 293.56809 * 28 14 13 50 50 H 1.08996 * 109.56425 * 185.55516 * 29 28 14 51 51 H 1.08994 * 109.35557 * 65.49808 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6874 2.2243 1.0273 5 1 1.0673 1.8708 1.8376 6 6 2.1504 3.5330 1.0274 7 7 2.9074 3.9634 0.0406 8 14 1.6988 4.6832 2.4284 9 1 2.2017 4.1245 3.7092 10 1 2.3132 6.0146 2.1934 11 1 0.2221 4.8249 2.4961 12 6 2.0399 -0.7209 -1.2499 13 6 3.5714 -0.6890 -1.2638 14 7 4.0677 -1.2493 0.0006 15 6 4.9609 -2.2584 0.0008 16 8 5.4245 -2.6582 -1.0463 17 6 5.3838 -2.8901 1.3020 18 1 5.3583 -2.1191 2.0721 19 6 6.8125 -3.3540 1.1527 20 6 7.4298 -3.6825 2.5211 21 6 6.9204 -5.0577 2.9165 22 7 7.6085 -6.1492 3.0659 23 7 6.8150 -7.1085 3.4053 24 6 5.5863 -6.6607 3.4775 25 7 5.6321 -5.3497 3.1746 26 6 4.5187 -4.3835 3.1262 27 6 4.3659 -3.9437 1.6621 28 6 3.5668 -0.6926 1.2646 29 6 2.0395 -0.7207 1.2503 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8901 32 1 -0.3633 0.5142 -0.8898 33 1 2.5754 1.6988 -0.7277 34 1 3.2306 4.8780 0.0405 35 1 1.6575 -0.2209 -2.1397 36 1 1.6977 -1.7557 -1.2381 37 1 3.9146 0.3405 -1.3670 38 1 3.9438 -1.2836 -2.0981 39 1 6.8359 -4.2455 0.5259 40 1 7.3969 -2.5665 0.6769 41 1 8.5171 -3.6959 2.4454 42 1 7.1173 -2.9424 3.2577 43 1 4.7067 -7.2320 3.7349 44 1 3.5994 -4.8584 3.4693 45 1 4.7480 -3.5206 3.7514 46 1 4.5018 -4.8087 1.0129 47 1 3.3651 -3.5386 1.5129 48 1 3.9341 -1.2910 2.0984 49 1 3.9095 0.3366 1.3719 50 1 1.6568 -0.2205 2.1399 51 1 1.6973 -1.7555 1.2385 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281507867.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:02 Heat of formation + Delta-G solvation = 37.869561 kcal Electronic energy + Delta-G solvation = -32377.722210 eV Core-core repulsion = 28312.810328 eV Total energy + Delta-G solvation = -4064.911881 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.22814 -41.64388 -39.51951 -37.88484 -36.01933 -35.16722 -34.18780 -33.26812 -31.92877 -30.86898 -30.80343 -29.24327 -27.82282 -25.83172 -25.35080 -24.33590 -24.18052 -23.35874 -22.32541 -21.21285 -20.56775 -19.42449 -18.91888 -18.68159 -18.04488 -17.01512 -16.96270 -16.57089 -16.26250 -16.02973 -15.66557 -15.60293 -15.45387 -15.05315 -15.00950 -14.86164 -14.61848 -14.09885 -14.01869 -13.74137 -13.44235 -13.31536 -13.18514 -13.11599 -12.77577 -12.65542 -12.63600 -12.55170 -12.50605 -12.40281 -12.18744 -12.04062 -12.00962 -11.90466 -11.64810 -11.43184 -11.28828 -11.16016 -11.04801 -10.81361 -10.54784 -10.17603 -9.57149 -8.85628 -7.82316 -5.07753 0.97871 1.52460 1.54140 1.59313 1.61539 1.66249 1.91189 2.03594 2.64230 3.23235 3.30772 3.48985 3.52518 3.64173 3.83304 3.85514 3.89749 3.96094 4.00780 4.11144 4.20888 4.22570 4.26075 4.35818 4.41039 4.43425 4.48318 4.52191 4.68800 4.74354 4.77100 4.83543 4.87514 4.92149 4.95960 5.04146 5.06646 5.08116 5.09850 5.15761 5.16846 5.24124 5.30275 5.39181 5.43848 5.62409 5.70226 5.75404 6.03191 6.39320 6.53440 7.18115 7.46724 7.78362 8.24316 8.46284 9.41428 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.002834 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.061228 B = 9878.658883 C =10247.700453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.187 3.813 3 N -0.725 5.725 4 C -0.206 4.206 5 H 0.081 0.919 6 C -0.077 4.077 7 N -0.973 5.973 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.310 1.310 11 H -0.285 1.285 12 C -0.118 4.118 13 C 0.119 3.881 14 N -0.595 5.595 15 C 0.511 3.489 16 O -0.592 6.592 17 C -0.101 4.101 18 H 0.121 0.879 19 C -0.094 4.094 20 C -0.025 4.025 21 C 0.178 3.822 22 N -0.348 5.348 23 N -0.360 5.360 24 C 0.163 3.837 25 N -0.466 5.466 26 C 0.108 3.892 27 C -0.121 4.121 28 C 0.116 3.884 29 C -0.128 4.128 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.369 0.631 34 H 0.244 0.756 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.260 0.740 44 H 0.147 0.853 45 H 0.124 0.876 46 H 0.060 0.940 47 H 0.112 0.888 48 H 0.114 0.886 49 H 0.051 0.949 50 H 0.071 0.929 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 -16.956 8.381 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.097 3.903 3 N -0.366 5.366 4 C -0.338 4.338 5 H 0.099 0.901 6 C -0.269 4.269 7 N -0.625 5.625 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.237 1.237 11 H -0.212 1.212 12 C -0.157 4.157 13 C -0.005 4.005 14 N -0.326 5.326 15 C 0.300 3.700 16 O -0.473 6.473 17 C -0.122 4.122 18 H 0.138 0.862 19 C -0.133 4.133 20 C -0.064 4.064 21 C -0.092 4.092 22 N -0.187 5.187 23 N -0.198 5.198 24 C -0.126 4.126 25 N -0.156 5.156 26 C -0.013 4.013 27 C -0.159 4.159 28 C -0.006 4.006 29 C -0.168 4.168 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.201 0.799 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.138 0.862 43 H 0.276 0.724 44 H 0.165 0.835 45 H 0.142 0.858 46 H 0.079 0.921 47 H 0.130 0.870 48 H 0.132 0.868 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.376 -18.051 8.052 19.769 hybrid contribution -0.931 2.262 -0.313 2.466 sum -1.307 -15.788 7.739 17.632 Atomic orbital electron populations 1.22154 0.96774 1.00768 1.00755 1.19877 0.92566 0.84202 0.93612 1.42720 1.60400 1.07641 1.25816 1.19390 1.22849 0.91467 1.00094 0.90096 1.25334 1.02075 0.99241 1.00257 1.69792 1.41752 1.16454 1.34527 0.85469 0.77304 0.78297 0.80230 1.20047 1.23706 1.21227 1.21992 0.93958 1.01242 0.98478 1.21369 0.94711 0.97805 0.86573 1.48171 1.42356 1.34079 1.07998 1.21244 0.77924 0.78996 0.91818 1.90669 1.56525 1.64419 1.35689 1.20783 0.96171 1.00020 0.95202 0.86171 1.21045 0.93923 1.01819 0.96487 1.20640 1.02303 0.86765 0.96704 1.25184 0.82452 0.99418 1.02190 1.74126 1.27483 0.97376 1.19701 1.74413 1.00708 1.24413 1.20314 1.27116 1.00359 0.83117 1.01963 1.46526 1.09277 1.10222 1.49618 1.22848 0.88750 0.92779 0.96895 1.21576 0.99891 0.98109 0.96328 1.21739 0.95171 0.99089 0.84604 1.22162 0.94594 1.00666 0.99392 0.91196 0.93792 0.94772 0.79858 0.94730 0.91514 0.89628 0.93497 0.90649 0.93248 0.90506 0.87552 0.86158 0.72410 0.83508 0.85782 0.92103 0.87024 0.86813 0.93008 0.91009 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 8.44 71.98 0.61 -3.59 16 2 C 0.19 5.66 0.74 3.63 0.00 5.66 16 3 N -0.73 -30.27 4.14 -303.23 -1.25 -31.52 16 4 C -0.21 -9.65 8.68 84.03 0.73 -8.92 16 5 H 0.08 3.57 6.70 -2.91 -0.02 3.55 16 6 C -0.08 -4.03 5.50 84.86 0.47 -3.56 16 7 N -0.97 -55.82 13.06 21.65 0.28 -55.54 16 8 Si 0.96 42.59 29.55 68.60 2.03 44.61 16 9 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 10 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 C -0.12 -3.25 4.96 30.67 0.15 -3.10 16 13 C 0.12 3.62 6.15 86.36 0.53 4.15 16 14 N -0.59 -15.48 2.98 -819.72 -2.44 -17.92 16 15 C 0.51 13.04 6.38 87.66 0.56 13.60 16 16 O -0.59 -20.39 15.71 -3.04 -0.05 -20.44 16 17 C -0.10 -1.59 1.29 -12.90 -0.02 -1.61 16 18 H 0.12 1.31 5.54 -2.38 -0.01 1.30 16 19 C -0.09 -1.73 4.33 30.15 0.13 -1.60 16 20 C -0.02 -0.36 6.02 30.45 0.18 -0.18 16 21 C 0.18 3.53 7.03 138.83 0.98 4.51 16 22 N -0.35 -9.75 12.23 -50.00 -0.61 -10.36 16 23 N -0.36 -9.44 12.25 -60.28 -0.74 -10.18 16 24 C 0.16 2.53 12.83 180.25 2.31 4.85 16 25 N -0.47 -6.35 2.72 -515.34 -1.40 -7.75 16 26 C 0.11 0.53 6.53 86.40 0.56 1.10 16 27 C -0.12 -1.27 4.74 30.11 0.14 -1.13 16 28 C 0.12 2.69 5.80 86.22 0.50 3.20 16 29 C -0.13 -3.01 4.69 30.53 0.14 -2.87 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.37 7.27 -2.39 -0.02 1.35 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.37 17.63 6.46 -92.71 -0.60 17.03 16 34 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 1.71 6.94 -2.38 -0.02 1.70 16 38 H 0.08 2.39 7.03 -2.39 -0.02 2.37 16 39 H 0.05 1.19 7.91 -2.38 -0.02 1.17 16 40 H 0.08 1.57 7.96 -2.39 -0.02 1.55 16 41 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.12 1.04 7.89 -2.39 -0.02 1.03 16 43 H 0.26 1.26 8.06 -2.91 -0.02 1.23 16 44 H 0.15 -0.26 8.13 -2.38 -0.02 -0.28 16 45 H 0.12 0.17 7.87 -2.39 -0.02 0.15 16 46 H 0.06 0.94 8.08 -2.39 -0.02 0.93 16 47 H 0.11 0.91 7.80 -2.39 -0.02 0.89 16 48 H 0.11 1.59 5.23 -2.39 -0.01 1.58 16 49 H 0.05 1.67 7.74 -2.39 -0.02 1.66 16 50 H 0.07 1.82 7.31 -2.39 -0.02 1.80 16 51 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -77.51 389.15 4.15 -73.36 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.35 Total: 25.21 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 7.98 Total: 10.51 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -6.16 Total: -133.27 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -77.51 4.15 -73.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281507867.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.232 kcal (2) G-P(sol) polarization free energy of solvation -77.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds