Wall clock time and date at job start Wed Apr 1 2020 04:38:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46507 * 109.45927 * 2 1
4 4 C 1.36934 * 119.99834 * 60.02331 * 3 2 1
5 5 H 1.07994 * 120.00491 * 0.02562 * 4 3 2
6 6 C 1.38815 * 119.99294 * 179.97438 * 4 3 2
7 7 N 1.31610 * 120.00499 * 359.97438 * 6 4 3
8 8 Si 1.86801 * 119.99599 * 179.97438 * 6 4 3
9 9 H 1.48507 * 109.47174 * 60.00106 * 8 6 4
10 10 H 1.48504 * 109.47339 * 180.02562 * 8 6 4
11 11 H 1.48502 * 109.47272 * 300.00300 * 8 6 4
12 12 C 1.53032 * 109.46462 * 240.02546 * 2 1 3
13 13 C 1.53192 * 109.31686 * 178.63024 * 12 2 1
14 14 N 1.46930 * 108.77693 * 54.63340 * 13 12 2
15 15 C 1.34770 * 120.63101 * 126.36803 * 14 13 12
16 16 O 1.21284 * 120.00048 * 4.49553 * 15 14 13
17 17 C 1.50698 * 120.00012 * 184.49415 * 15 14 13
18 18 H 1.09005 * 107.87879 * 327.94447 * 17 15 14
19 19 C 1.50950 * 108.00125 * 211.41358 * 17 15 14
20 20 C 1.53675 * 110.96625 * 165.71761 * 19 17 15
21 21 C 1.51883 * 106.89633 * 79.10382 * 20 19 17
22 22 N 1.29893 * 127.81429 * 114.76349 * 21 20 19
23 23 N 1.29043 * 109.22079 * 180.10445 * 22 21 20
24 24 C 1.30976 * 109.70558 * 0.33755 * 23 22 21
25 25 N 1.34598 * 124.56401 * 294.93941 * 21 20 19
26 26 C 1.47499 * 125.04122 * 359.44073 * 25 21 20
27 27 C 1.50862 * 108.02964 * 84.49599 * 17 15 14
28 28 C 1.46925 * 118.73540 * 306.64860 * 14 13 12
29 29 C 1.52763 * 109.01188 * 53.30567 * 28 14 13
30 30 H 1.08997 * 109.47060 * 179.97438 * 1 2 3
31 31 H 1.08995 * 109.47279 * 299.97586 * 1 2 3
32 32 H 1.09001 * 109.47076 * 59.97555 * 1 2 3
33 33 H 0.96998 * 119.99515 * 240.02254 * 3 2 1
34 34 H 0.96999 * 120.00529 * 179.97438 * 7 6 4
35 35 H 1.08998 * 109.49879 * 58.67339 * 12 2 1
36 36 H 1.09003 * 109.50077 * 298.57933 * 12 2 1
37 37 H 1.09006 * 109.58400 * 294.84466 * 13 12 2
38 38 H 1.09003 * 109.70361 * 174.49283 * 13 12 2
39 39 H 1.09004 * 109.18101 * 286.10463 * 19 17 15
40 40 H 1.09002 * 109.17993 * 45.38759 * 19 17 15
41 41 H 1.09003 * 109.96480 * 198.45026 * 20 19 17
42 42 H 1.09001 * 109.96603 * 319.66626 * 20 19 17
43 43 H 1.07998 * 126.60846 * 179.78019 * 24 23 22
44 44 H 1.09007 * 109.92993 * 185.38650 * 26 25 21
45 45 H 1.08997 * 109.93267 * 306.59513 * 26 25 21
46 46 H 1.09002 * 109.14513 * 73.96579 * 27 17 15
47 47 H 1.09001 * 109.10215 * 314.78274 * 27 17 15
48 48 H 1.08995 * 109.58574 * 173.14490 * 28 14 13
49 49 H 1.09003 * 109.58480 * 293.56809 * 28 14 13
50 50 H 1.08996 * 109.56425 * 185.55516 * 29 28 14
51 51 H 1.08994 * 109.35557 * 65.49808 * 29 28 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0180 1.3814 0.0000
4 6 1.6874 2.2243 1.0273
5 1 1.0673 1.8708 1.8376
6 6 2.1504 3.5330 1.0274
7 7 2.9074 3.9634 0.0406
8 14 1.6988 4.6832 2.4284
9 1 2.2017 4.1245 3.7092
10 1 2.3132 6.0146 2.1934
11 1 0.2221 4.8249 2.4961
12 6 2.0399 -0.7209 -1.2499
13 6 3.5714 -0.6890 -1.2638
14 7 4.0677 -1.2493 0.0006
15 6 4.9609 -2.2584 0.0008
16 8 5.4245 -2.6582 -1.0463
17 6 5.3838 -2.8901 1.3020
18 1 5.3583 -2.1191 2.0721
19 6 6.8125 -3.3540 1.1527
20 6 7.4298 -3.6825 2.5211
21 6 6.9204 -5.0577 2.9165
22 7 7.6085 -6.1492 3.0659
23 7 6.8150 -7.1085 3.4053
24 6 5.5863 -6.6607 3.4775
25 7 5.6321 -5.3497 3.1746
26 6 4.5187 -4.3835 3.1262
27 6 4.3659 -3.9437 1.6621
28 6 3.5668 -0.6926 1.2646
29 6 2.0395 -0.7207 1.2503
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5134 0.8901
32 1 -0.3633 0.5142 -0.8898
33 1 2.5754 1.6988 -0.7277
34 1 3.2306 4.8780 0.0405
35 1 1.6575 -0.2209 -2.1397
36 1 1.6977 -1.7557 -1.2381
37 1 3.9146 0.3405 -1.3670
38 1 3.9438 -1.2836 -2.0981
39 1 6.8359 -4.2455 0.5259
40 1 7.3969 -2.5665 0.6769
41 1 8.5171 -3.6959 2.4454
42 1 7.1173 -2.9424 3.2577
43 1 4.7067 -7.2320 3.7349
44 1 3.5994 -4.8584 3.4693
45 1 4.7480 -3.5206 3.7514
46 1 4.5018 -4.8087 1.0129
47 1 3.3651 -3.5386 1.5129
48 1 3.9341 -1.2910 2.0984
49 1 3.9095 0.3366 1.3719
50 1 1.6568 -0.2205 2.1399
51 1 1.6973 -1.7555 1.2385
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001281507867.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:38:02
Heat of formation + Delta-G solvation = 37.869561 kcal
Electronic energy + Delta-G solvation = -32377.722210 eV
Core-core repulsion = 28312.810328 eV
Total energy + Delta-G solvation = -4064.911881 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.27 seconds
Orbital eigenvalues (eV)
-44.22814 -41.64388 -39.51951 -37.88484 -36.01933 -35.16722 -34.18780 -33.26812
-31.92877 -30.86898 -30.80343 -29.24327 -27.82282 -25.83172 -25.35080 -24.33590
-24.18052 -23.35874 -22.32541 -21.21285 -20.56775 -19.42449 -18.91888 -18.68159
-18.04488 -17.01512 -16.96270 -16.57089 -16.26250 -16.02973 -15.66557 -15.60293
-15.45387 -15.05315 -15.00950 -14.86164 -14.61848 -14.09885 -14.01869 -13.74137
-13.44235 -13.31536 -13.18514 -13.11599 -12.77577 -12.65542 -12.63600 -12.55170
-12.50605 -12.40281 -12.18744 -12.04062 -12.00962 -11.90466 -11.64810 -11.43184
-11.28828 -11.16016 -11.04801 -10.81361 -10.54784 -10.17603 -9.57149 -8.85628
-7.82316 -5.07753 0.97871 1.52460 1.54140 1.59313 1.61539 1.66249
1.91189 2.03594 2.64230 3.23235 3.30772 3.48985 3.52518 3.64173
3.83304 3.85514 3.89749 3.96094 4.00780 4.11144 4.20888 4.22570
4.26075 4.35818 4.41039 4.43425 4.48318 4.52191 4.68800 4.74354
4.77100 4.83543 4.87514 4.92149 4.95960 5.04146 5.06646 5.08116
5.09850 5.15761 5.16846 5.24124 5.30275 5.39181 5.43848 5.62409
5.70226 5.75404 6.03191 6.39320 6.53440 7.18115 7.46724 7.78362
8.24316 8.46284 9.41428
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.015296 B = 0.002834 C = 0.002732
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1830.061228 B = 9878.658883 C =10247.700453
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.187 3.813
3 N -0.725 5.725
4 C -0.206 4.206
5 H 0.081 0.919
6 C -0.077 4.077
7 N -0.973 5.973
8 Si 0.956 3.044
9 H -0.274 1.274
10 H -0.310 1.310
11 H -0.285 1.285
12 C -0.118 4.118
13 C 0.119 3.881
14 N -0.595 5.595
15 C 0.511 3.489
16 O -0.592 6.592
17 C -0.101 4.101
18 H 0.121 0.879
19 C -0.094 4.094
20 C -0.025 4.025
21 C 0.178 3.822
22 N -0.348 5.348
23 N -0.360 5.360
24 C 0.163 3.837
25 N -0.466 5.466
26 C 0.108 3.892
27 C -0.121 4.121
28 C 0.116 3.884
29 C -0.128 4.128
30 H 0.069 0.931
31 H 0.043 0.957
32 H 0.033 0.967
33 H 0.369 0.631
34 H 0.244 0.756
35 H 0.066 0.934
36 H 0.085 0.915
37 H 0.047 0.953
38 H 0.075 0.925
39 H 0.049 0.951
40 H 0.076 0.924
41 H 0.106 0.894
42 H 0.120 0.880
43 H 0.260 0.740
44 H 0.147 0.853
45 H 0.124 0.876
46 H 0.060 0.940
47 H 0.112 0.888
48 H 0.114 0.886
49 H 0.051 0.949
50 H 0.071 0.929
51 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.676 -16.956 8.381 18.988
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.097 3.903
3 N -0.366 5.366
4 C -0.338 4.338
5 H 0.099 0.901
6 C -0.269 4.269
7 N -0.625 5.625
8 Si 0.787 3.213
9 H -0.200 1.200
10 H -0.237 1.237
11 H -0.212 1.212
12 C -0.157 4.157
13 C -0.005 4.005
14 N -0.326 5.326
15 C 0.300 3.700
16 O -0.473 6.473
17 C -0.122 4.122
18 H 0.138 0.862
19 C -0.133 4.133
20 C -0.064 4.064
21 C -0.092 4.092
22 N -0.187 5.187
23 N -0.198 5.198
24 C -0.126 4.126
25 N -0.156 5.156
26 C -0.013 4.013
27 C -0.159 4.159
28 C -0.006 4.006
29 C -0.168 4.168
30 H 0.088 0.912
31 H 0.062 0.938
32 H 0.052 0.948
33 H 0.201 0.799
34 H 0.053 0.947
35 H 0.085 0.915
36 H 0.104 0.896
37 H 0.065 0.935
38 H 0.094 0.906
39 H 0.068 0.932
40 H 0.095 0.905
41 H 0.124 0.876
42 H 0.138 0.862
43 H 0.276 0.724
44 H 0.165 0.835
45 H 0.142 0.858
46 H 0.079 0.921
47 H 0.130 0.870
48 H 0.132 0.868
49 H 0.070 0.930
50 H 0.090 0.910
51 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -0.376 -18.051 8.052 19.769
hybrid contribution -0.931 2.262 -0.313 2.466
sum -1.307 -15.788 7.739 17.632
Atomic orbital electron populations
1.22154 0.96774 1.00768 1.00755 1.19877 0.92566 0.84202 0.93612
1.42720 1.60400 1.07641 1.25816 1.19390 1.22849 0.91467 1.00094
0.90096 1.25334 1.02075 0.99241 1.00257 1.69792 1.41752 1.16454
1.34527 0.85469 0.77304 0.78297 0.80230 1.20047 1.23706 1.21227
1.21992 0.93958 1.01242 0.98478 1.21369 0.94711 0.97805 0.86573
1.48171 1.42356 1.34079 1.07998 1.21244 0.77924 0.78996 0.91818
1.90669 1.56525 1.64419 1.35689 1.20783 0.96171 1.00020 0.95202
0.86171 1.21045 0.93923 1.01819 0.96487 1.20640 1.02303 0.86765
0.96704 1.25184 0.82452 0.99418 1.02190 1.74126 1.27483 0.97376
1.19701 1.74413 1.00708 1.24413 1.20314 1.27116 1.00359 0.83117
1.01963 1.46526 1.09277 1.10222 1.49618 1.22848 0.88750 0.92779
0.96895 1.21576 0.99891 0.98109 0.96328 1.21739 0.95171 0.99089
0.84604 1.22162 0.94594 1.00666 0.99392 0.91196 0.93792 0.94772
0.79858 0.94730 0.91514 0.89628 0.93497 0.90649 0.93248 0.90506
0.87552 0.86158 0.72410 0.83508 0.85782 0.92103 0.87024 0.86813
0.93008 0.91009 0.89727
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.19 8.44 71.98 0.61 -3.59 16
2 C 0.19 5.66 0.74 3.63 0.00 5.66 16
3 N -0.73 -30.27 4.14 -303.23 -1.25 -31.52 16
4 C -0.21 -9.65 8.68 84.03 0.73 -8.92 16
5 H 0.08 3.57 6.70 -2.91 -0.02 3.55 16
6 C -0.08 -4.03 5.50 84.86 0.47 -3.56 16
7 N -0.97 -55.82 13.06 21.65 0.28 -55.54 16
8 Si 0.96 42.59 29.55 68.60 2.03 44.61 16
9 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16
10 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16
11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16
12 C -0.12 -3.25 4.96 30.67 0.15 -3.10 16
13 C 0.12 3.62 6.15 86.36 0.53 4.15 16
14 N -0.59 -15.48 2.98 -819.72 -2.44 -17.92 16
15 C 0.51 13.04 6.38 87.66 0.56 13.60 16
16 O -0.59 -20.39 15.71 -3.04 -0.05 -20.44 16
17 C -0.10 -1.59 1.29 -12.90 -0.02 -1.61 16
18 H 0.12 1.31 5.54 -2.38 -0.01 1.30 16
19 C -0.09 -1.73 4.33 30.15 0.13 -1.60 16
20 C -0.02 -0.36 6.02 30.45 0.18 -0.18 16
21 C 0.18 3.53 7.03 138.83 0.98 4.51 16
22 N -0.35 -9.75 12.23 -50.00 -0.61 -10.36 16
23 N -0.36 -9.44 12.25 -60.28 -0.74 -10.18 16
24 C 0.16 2.53 12.83 180.25 2.31 4.85 16
25 N -0.47 -6.35 2.72 -515.34 -1.40 -7.75 16
26 C 0.11 0.53 6.53 86.40 0.56 1.10 16
27 C -0.12 -1.27 4.74 30.11 0.14 -1.13 16
28 C 0.12 2.69 5.80 86.22 0.50 3.20 16
29 C -0.13 -3.01 4.69 30.53 0.14 -2.87 16
30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
31 H 0.04 1.37 7.27 -2.39 -0.02 1.35 16
32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16
33 H 0.37 17.63 6.46 -92.71 -0.60 17.03 16
34 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16
35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16
37 H 0.05 1.71 6.94 -2.38 -0.02 1.70 16
38 H 0.08 2.39 7.03 -2.39 -0.02 2.37 16
39 H 0.05 1.19 7.91 -2.38 -0.02 1.17 16
40 H 0.08 1.57 7.96 -2.39 -0.02 1.55 16
41 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16
42 H 0.12 1.04 7.89 -2.39 -0.02 1.03 16
43 H 0.26 1.26 8.06 -2.91 -0.02 1.23 16
44 H 0.15 -0.26 8.13 -2.38 -0.02 -0.28 16
45 H 0.12 0.17 7.87 -2.39 -0.02 0.15 16
46 H 0.06 0.94 8.08 -2.39 -0.02 0.93 16
47 H 0.11 0.91 7.80 -2.39 -0.02 0.89 16
48 H 0.11 1.59 5.23 -2.39 -0.01 1.58 16
49 H 0.05 1.67 7.74 -2.39 -0.02 1.66 16
50 H 0.07 1.82 7.31 -2.39 -0.02 1.80 16
51 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
Total: -1.00 -77.51 389.15 4.15 -73.36
By element:
Atomic # 1 Polarization: 24.87 SS G_CDS: 0.35 Total: 25.21 kcal
Atomic # 6 Polarization: 2.53 SS G_CDS: 7.98 Total: 10.51 kcal
Atomic # 7 Polarization: -127.10 SS G_CDS: -6.16 Total: -133.27 kcal
Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal
Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal
Total: -77.51 4.15 -73.36 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001281507867.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.232 kcal
(2) G-P(sol) polarization free energy of solvation -77.509 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.723 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.363 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.870 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds