Wall clock time and date at job start Wed Apr 1 2020 04:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46495 * 109.46039 * 2 1 4 4 C 1.36936 * 120.00117 * 299.97397 * 3 2 1 5 5 H 1.07990 * 120.00154 * 359.97438 * 4 3 2 6 6 C 1.38822 * 119.99787 * 180.02562 * 4 3 2 7 7 N 1.31619 * 119.99696 * 180.02562 * 6 4 3 8 8 Si 1.86793 * 120.00081 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47317 * 90.00173 * 8 6 4 10 10 H 1.48507 * 109.46978 * 210.00050 * 8 6 4 11 11 H 1.48503 * 109.47337 * 330.00009 * 8 6 4 12 12 C 1.53042 * 109.46047 * 119.97771 * 2 1 3 13 13 C 1.53196 * 109.31078 * 181.37000 * 12 2 1 14 14 N 1.46922 * 108.77577 * 305.35976 * 13 12 2 15 15 C 1.34775 * 120.63363 * 233.58501 * 14 13 12 16 16 O 1.21282 * 119.99476 * 4.51601 * 15 14 13 17 17 C 1.50690 * 120.00377 * 184.51425 * 15 14 13 18 18 H 1.09002 * 107.85039 * 324.30208 * 17 15 14 19 19 C 1.50953 * 108.02834 * 80.82852 * 17 15 14 20 20 C 1.53682 * 110.95164 * 194.26952 * 19 17 15 21 21 C 1.51877 * 106.90191 * 280.93309 * 20 19 17 22 22 N 1.29906 * 127.79187 * 245.43133 * 21 20 19 23 23 N 1.29032 * 109.22169 * 179.86693 * 22 21 20 24 24 C 1.30968 * 109.70594 * 359.72770 * 23 22 21 25 25 N 1.34594 * 124.59570 * 65.13393 * 21 20 19 26 26 C 1.47502 * 125.01289 * 0.45156 * 25 21 20 27 27 C 1.50857 * 108.03205 * 207.76632 * 17 15 14 28 28 C 1.46926 * 118.73553 * 53.86333 * 14 13 12 29 29 C 1.53036 * 109.44744 * 240.03689 * 2 1 3 30 30 H 1.09004 * 109.46997 * 300.02436 * 1 2 3 31 31 H 1.09003 * 109.47645 * 60.02337 * 1 2 3 32 32 H 1.09000 * 109.47487 * 180.02562 * 1 2 3 33 33 H 0.97007 * 120.00091 * 119.97617 * 3 2 1 34 34 H 0.96994 * 119.99591 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.50196 * 61.41414 * 12 2 1 36 36 H 1.09005 * 109.52393 * 301.33548 * 12 2 1 37 37 H 1.09006 * 109.58195 * 185.57010 * 13 12 2 38 38 H 1.09005 * 109.58764 * 65.15345 * 13 12 2 39 39 H 1.09005 * 109.18156 * 73.89915 * 19 17 15 40 40 H 1.08999 * 109.18565 * 314.65190 * 19 17 15 41 41 H 1.08999 * 109.96547 * 161.58031 * 20 19 17 42 42 H 1.08997 * 110.03735 * 40.32627 * 20 19 17 43 43 H 1.08004 * 126.60425 * 180.33822 * 24 23 22 44 44 H 1.08999 * 109.93112 * 174.69111 * 26 25 21 45 45 H 1.08999 * 109.93872 * 53.47079 * 26 25 21 46 46 H 1.09004 * 109.14651 * 285.97018 * 27 17 15 47 47 H 1.09003 * 109.14583 * 45.17162 * 27 17 15 48 48 H 1.08998 * 109.58823 * 65.92879 * 28 14 13 49 49 H 1.09000 * 109.58617 * 186.35099 * 28 14 13 50 50 H 1.09008 * 109.49673 * 298.57054 * 29 2 1 51 51 H 1.08990 * 109.50164 * 58.63440 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6875 2.2242 -1.0273 5 1 1.0674 1.8707 -1.8376 6 6 2.1505 3.5330 -1.0275 7 7 1.8323 4.3433 -2.0146 8 14 3.2248 4.1438 0.3731 9 1 4.6524 3.9014 0.0440 10 1 3.0023 5.5990 0.5693 11 1 2.8738 3.4169 1.6196 12 6 2.0398 -0.7210 1.2499 13 6 3.5714 -0.6891 1.2639 14 7 4.0675 -1.2494 -0.0004 15 6 4.9616 -2.2580 -0.0007 16 8 5.3023 -2.7665 1.0464 17 6 5.5378 -2.7538 -1.3018 18 1 4.7546 -2.6961 -2.0576 19 6 6.6489 -1.8162 -1.7081 20 6 7.0471 -2.0393 -3.1755 21 6 7.9375 -3.2692 -3.2094 22 7 9.1951 -3.3330 -3.5285 23 7 9.5962 -4.5556 -3.4325 24 6 8.6045 -5.3164 -3.0413 25 7 7.5333 -4.5141 -2.8958 26 6 6.1661 -4.8806 -2.4807 27 6 5.9099 -4.2050 -1.1248 28 6 3.5752 -0.6852 -1.2646 29 6 2.0395 -0.7207 -1.2502 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5135 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 2.5754 1.6988 0.7277 34 1 2.1561 5.2577 -2.0149 35 1 1.6975 -1.7557 1.2382 36 1 1.6574 -0.2215 2.1401 37 1 3.9416 -1.2852 2.0981 38 1 3.9145 0.3403 1.3671 39 1 7.5161 -1.9912 -1.0712 40 1 6.3137 -0.7869 -1.5804 41 1 7.5941 -1.1733 -3.5485 42 1 6.1575 -2.2068 -3.7826 43 1 8.6396 -6.3819 -2.8682 44 1 6.0867 -5.9628 -2.3775 45 1 5.4458 -4.5226 -3.2162 46 1 6.8118 -4.2712 -0.5162 47 1 5.0968 -4.7231 -0.6161 48 1 3.9187 0.3445 -1.3635 49 1 3.9481 -1.2787 -2.0993 50 1 1.6972 -1.7556 -1.2384 51 1 1.6564 -0.2210 -2.1398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281507868.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:08 Heat of formation + Delta-G solvation = 61.228094 kcal Electronic energy + Delta-G solvation = -32415.191019 eV Core-core repulsion = 28351.292040 eV Total energy + Delta-G solvation = -4063.898979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.50732 -40.64166 -38.45919 -37.02635 -34.88355 -34.42561 -32.55687 -32.29717 -30.94986 -30.12870 -29.80050 -28.16311 -27.04641 -24.68718 -23.91540 -23.16180 -23.04645 -22.64705 -21.42407 -20.52025 -19.47711 -18.30679 -17.95210 -17.79022 -17.12105 -16.18154 -16.02222 -15.46750 -15.31466 -15.02873 -14.67175 -14.53608 -14.37365 -14.13500 -13.79722 -13.67252 -13.34110 -13.28706 -12.94825 -12.68313 -12.64628 -12.41101 -12.31546 -12.02557 -11.95784 -11.61808 -11.49671 -11.40126 -11.31803 -11.19830 -11.05629 -10.94542 -10.90056 -10.54800 -10.44764 -10.42151 -10.26288 -9.90498 -9.64591 -9.56602 -9.35325 -9.04675 -8.45936 -7.36711 -5.86012 -3.21945 1.65321 2.22136 2.57720 2.72005 2.99764 3.29128 3.31874 3.39563 3.89216 4.06485 4.10124 4.17902 4.38277 4.50168 4.53035 4.63558 4.69945 4.82953 4.88772 5.00181 5.03549 5.11194 5.14515 5.20756 5.33260 5.36362 5.41375 5.49323 5.52243 5.54657 5.59142 5.73459 5.76466 5.79691 5.82839 5.85132 5.93989 5.98501 6.05529 6.19631 6.25069 6.31035 6.42549 6.53428 6.59993 6.61353 6.83858 6.91746 7.51167 7.89090 8.16511 8.33278 8.55052 9.10810 9.83864 10.03453 11.32014 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.003098 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.483483 B = 9037.054256 C = 9892.800215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.204 3.796 3 N -0.742 5.742 4 C -0.239 4.239 5 H 0.092 0.908 6 C 0.008 3.992 7 N -0.932 5.932 8 Si 0.877 3.123 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.278 1.278 12 C -0.132 4.132 13 C 0.114 3.886 14 N -0.599 5.599 15 C 0.515 3.485 16 O -0.553 6.553 17 C -0.110 4.110 18 H 0.097 0.903 19 C -0.111 4.111 20 C -0.030 4.030 21 C 0.180 3.820 22 N -0.295 5.295 23 N -0.305 5.305 24 C 0.147 3.853 25 N -0.469 5.469 26 C 0.106 3.894 27 C -0.117 4.117 28 C 0.110 3.890 29 C -0.133 4.133 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.217 0.783 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.050 0.950 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 -19.708 -0.143 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.113 3.887 3 N -0.386 5.386 4 C -0.368 4.368 5 H 0.110 0.890 6 C -0.188 4.188 7 N -0.580 5.580 8 Si 0.708 3.292 9 H -0.211 1.211 10 H -0.218 1.218 11 H -0.205 1.205 12 C -0.171 4.171 13 C -0.008 4.008 14 N -0.330 5.330 15 C 0.302 3.698 16 O -0.432 6.432 17 C -0.131 4.131 18 H 0.114 0.886 19 C -0.150 4.150 20 C -0.070 4.070 21 C -0.088 4.088 22 N -0.135 5.135 23 N -0.144 5.144 24 C -0.141 4.141 25 N -0.160 5.160 26 C -0.017 4.017 27 C -0.156 4.156 28 C -0.012 4.012 29 C -0.173 4.173 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.234 0.766 44 H 0.125 0.875 45 H 0.118 0.882 46 H 0.101 0.899 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.092 0.908 50 H 0.069 0.931 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.426 -19.442 -0.224 20.187 hybrid contribution -0.685 0.186 1.372 1.544 sum 4.741 -19.257 1.147 19.865 Atomic orbital electron populations 1.22195 0.96960 0.99242 1.02559 1.19473 0.92457 0.85085 0.91653 1.42899 1.61552 1.07660 1.26521 1.18941 1.26589 0.91443 0.99867 0.89012 1.24628 1.00468 0.96321 0.97378 1.69680 1.49560 1.06464 1.32250 0.86684 0.81153 0.78366 0.83043 1.21146 1.21830 1.20451 1.22131 0.94742 1.00836 0.99358 1.21561 0.94336 0.98861 0.86047 1.48165 1.42174 1.34347 1.08352 1.20498 0.78980 0.79493 0.90803 1.90670 1.61113 1.57708 1.33678 1.20717 0.99704 0.95644 0.97017 0.88551 1.21286 0.98142 1.00136 0.95452 1.20564 0.97155 0.91999 0.97251 1.24902 0.94140 0.87880 1.01893 1.74257 1.07649 1.12144 1.19465 1.74528 1.24829 0.97208 1.17861 1.26314 0.83415 1.00039 1.04338 1.46331 1.11813 1.08119 1.49767 1.22519 0.79638 1.02124 0.97382 1.21489 1.04596 0.93952 0.95517 1.21975 0.95451 1.00151 0.83652 1.22352 0.94292 0.99270 1.01426 0.93159 0.91955 0.94390 0.80596 0.93042 0.91464 0.90813 0.89642 0.91347 0.90648 0.89032 0.87193 0.88951 0.76631 0.87484 0.88234 0.89919 0.88787 0.89124 0.90849 0.93080 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.44 37.15 0.31 -2.06 16 2 C 0.20 3.25 0.74 -131.78 -0.10 3.16 16 3 N -0.74 -14.88 3.93 -47.20 -0.19 -15.07 16 4 C -0.24 -5.82 9.16 -15.06 -0.14 -5.96 16 5 H 0.09 2.41 6.93 -52.49 -0.36 2.05 16 6 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 7 N -0.93 -27.27 13.97 55.49 0.78 -26.49 16 8 Si 0.88 20.66 27.74 -169.99 -4.71 15.95 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 11 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 12 C -0.13 -1.83 4.96 -26.61 -0.13 -1.96 16 13 C 0.11 1.63 6.16 -3.71 -0.02 1.61 16 14 N -0.60 -7.93 2.97 -172.50 -0.51 -8.44 16 15 C 0.51 6.59 6.44 -10.99 -0.07 6.52 16 16 O -0.55 -8.88 15.59 5.56 0.09 -8.79 16 17 C -0.11 -0.98 1.30 -93.88 -0.12 -1.10 16 18 H 0.10 0.68 5.53 -51.93 -0.29 0.40 16 19 C -0.11 -1.05 4.75 -27.41 -0.13 -1.18 16 20 C -0.03 -0.26 6.02 -26.95 -0.16 -0.42 16 21 C 0.18 1.97 7.02 -155.74 -1.09 0.88 16 22 N -0.30 -4.25 12.23 32.84 0.40 -3.85 16 23 N -0.30 -4.17 12.24 29.59 0.36 -3.81 16 24 C 0.15 1.36 12.83 -90.36 -1.16 0.20 16 25 N -0.47 -4.03 2.72 -114.24 -0.31 -4.34 16 26 C 0.11 0.54 6.53 -3.16 -0.02 0.52 16 27 C -0.12 -0.89 4.37 -27.47 -0.12 -1.01 16 28 C 0.11 1.42 5.47 -3.49 -0.02 1.41 16 29 C -0.13 -1.88 4.72 -26.39 -0.12 -2.00 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.10 7.27 -51.93 -0.38 0.73 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.36 7.39 4.32 -40.82 -0.18 7.21 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 38 H 0.07 1.06 6.94 -51.93 -0.36 0.70 16 39 H 0.07 0.85 7.91 -51.93 -0.41 0.44 16 40 H 0.09 0.91 7.41 -51.93 -0.39 0.53 16 41 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 0.59 7.89 -51.93 -0.41 0.18 16 43 H 0.22 1.02 8.06 -52.48 -0.42 0.59 16 44 H 0.11 0.27 8.13 -51.93 -0.42 -0.15 16 45 H 0.10 0.38 7.87 -51.93 -0.41 -0.03 16 46 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 47 H 0.09 0.69 7.91 -51.93 -0.41 0.28 16 48 H 0.09 1.44 7.74 -51.93 -0.40 1.04 16 49 H 0.07 0.72 5.30 -51.93 -0.28 0.45 16 50 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 51 H 0.08 1.30 7.31 -51.93 -0.38 0.92 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -33.93 385.31 -9.47 -43.40 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -7.98 Total: 6.91 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -3.20 Total: -1.28 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.53 Total: -61.99 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.71 Total: 15.95 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.93 -9.47 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281507868.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.625 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds