Wall clock time and date at job start Wed Apr 1 2020 04:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46495 * 109.46039 * 2 1 4 4 C 1.36936 * 120.00117 * 299.97397 * 3 2 1 5 5 H 1.07990 * 120.00154 * 359.97438 * 4 3 2 6 6 C 1.38822 * 119.99787 * 180.02562 * 4 3 2 7 7 N 1.31619 * 119.99696 * 180.02562 * 6 4 3 8 8 Si 1.86793 * 120.00081 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47317 * 90.00173 * 8 6 4 10 10 H 1.48507 * 109.46978 * 210.00050 * 8 6 4 11 11 H 1.48503 * 109.47337 * 330.00009 * 8 6 4 12 12 C 1.53042 * 109.46047 * 119.97771 * 2 1 3 13 13 C 1.53196 * 109.31078 * 181.37000 * 12 2 1 14 14 N 1.46922 * 108.77577 * 305.35976 * 13 12 2 15 15 C 1.34775 * 120.63363 * 233.58501 * 14 13 12 16 16 O 1.21282 * 119.99476 * 4.51601 * 15 14 13 17 17 C 1.50690 * 120.00377 * 184.51425 * 15 14 13 18 18 H 1.09002 * 107.85039 * 324.30208 * 17 15 14 19 19 C 1.50953 * 108.02834 * 80.82852 * 17 15 14 20 20 C 1.53682 * 110.95164 * 194.26952 * 19 17 15 21 21 C 1.51877 * 106.90191 * 280.93309 * 20 19 17 22 22 N 1.29906 * 127.79187 * 245.43133 * 21 20 19 23 23 N 1.29032 * 109.22169 * 179.86693 * 22 21 20 24 24 C 1.30968 * 109.70594 * 359.72770 * 23 22 21 25 25 N 1.34594 * 124.59570 * 65.13393 * 21 20 19 26 26 C 1.47502 * 125.01289 * 0.45156 * 25 21 20 27 27 C 1.50857 * 108.03205 * 207.76632 * 17 15 14 28 28 C 1.46926 * 118.73553 * 53.86333 * 14 13 12 29 29 C 1.53036 * 109.44744 * 240.03689 * 2 1 3 30 30 H 1.09004 * 109.46997 * 300.02436 * 1 2 3 31 31 H 1.09003 * 109.47645 * 60.02337 * 1 2 3 32 32 H 1.09000 * 109.47487 * 180.02562 * 1 2 3 33 33 H 0.97007 * 120.00091 * 119.97617 * 3 2 1 34 34 H 0.96994 * 119.99591 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.50196 * 61.41414 * 12 2 1 36 36 H 1.09005 * 109.52393 * 301.33548 * 12 2 1 37 37 H 1.09006 * 109.58195 * 185.57010 * 13 12 2 38 38 H 1.09005 * 109.58764 * 65.15345 * 13 12 2 39 39 H 1.09005 * 109.18156 * 73.89915 * 19 17 15 40 40 H 1.08999 * 109.18565 * 314.65190 * 19 17 15 41 41 H 1.08999 * 109.96547 * 161.58031 * 20 19 17 42 42 H 1.08997 * 110.03735 * 40.32627 * 20 19 17 43 43 H 1.08004 * 126.60425 * 180.33822 * 24 23 22 44 44 H 1.08999 * 109.93112 * 174.69111 * 26 25 21 45 45 H 1.08999 * 109.93872 * 53.47079 * 26 25 21 46 46 H 1.09004 * 109.14651 * 285.97018 * 27 17 15 47 47 H 1.09003 * 109.14583 * 45.17162 * 27 17 15 48 48 H 1.08998 * 109.58823 * 65.92879 * 28 14 13 49 49 H 1.09000 * 109.58617 * 186.35099 * 28 14 13 50 50 H 1.09008 * 109.49673 * 298.57054 * 29 2 1 51 51 H 1.08990 * 109.50164 * 58.63440 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6875 2.2242 -1.0273 5 1 1.0674 1.8707 -1.8376 6 6 2.1505 3.5330 -1.0275 7 7 1.8323 4.3433 -2.0146 8 14 3.2248 4.1438 0.3731 9 1 4.6524 3.9014 0.0440 10 1 3.0023 5.5990 0.5693 11 1 2.8738 3.4169 1.6196 12 6 2.0398 -0.7210 1.2499 13 6 3.5714 -0.6891 1.2639 14 7 4.0675 -1.2494 -0.0004 15 6 4.9616 -2.2580 -0.0007 16 8 5.3023 -2.7665 1.0464 17 6 5.5378 -2.7538 -1.3018 18 1 4.7546 -2.6961 -2.0576 19 6 6.6489 -1.8162 -1.7081 20 6 7.0471 -2.0393 -3.1755 21 6 7.9375 -3.2692 -3.2094 22 7 9.1951 -3.3330 -3.5285 23 7 9.5962 -4.5556 -3.4325 24 6 8.6045 -5.3164 -3.0413 25 7 7.5333 -4.5141 -2.8958 26 6 6.1661 -4.8806 -2.4807 27 6 5.9099 -4.2050 -1.1248 28 6 3.5752 -0.6852 -1.2646 29 6 2.0395 -0.7207 -1.2502 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5135 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 2.5754 1.6988 0.7277 34 1 2.1561 5.2577 -2.0149 35 1 1.6975 -1.7557 1.2382 36 1 1.6574 -0.2215 2.1401 37 1 3.9416 -1.2852 2.0981 38 1 3.9145 0.3403 1.3671 39 1 7.5161 -1.9912 -1.0712 40 1 6.3137 -0.7869 -1.5804 41 1 7.5941 -1.1733 -3.5485 42 1 6.1575 -2.2068 -3.7826 43 1 8.6396 -6.3819 -2.8682 44 1 6.0867 -5.9628 -2.3775 45 1 5.4458 -4.5226 -3.2162 46 1 6.8118 -4.2712 -0.5162 47 1 5.0968 -4.7231 -0.6161 48 1 3.9187 0.3445 -1.3635 49 1 3.9481 -1.2787 -2.0993 50 1 1.6972 -1.7556 -1.2384 51 1 1.6564 -0.2210 -2.1398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281507868.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:07 Heat of formation + Delta-G solvation = 40.796885 kcal Electronic energy + Delta-G solvation = -32416.076983 eV Core-core repulsion = 28351.292040 eV Total energy + Delta-G solvation = -4064.784943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.24882 -41.66921 -39.61904 -37.88263 -36.12880 -35.25735 -34.16078 -33.19780 -32.04343 -31.53099 -30.85906 -29.28185 -27.83871 -25.58390 -25.35385 -24.32640 -24.23742 -23.38729 -22.32858 -21.21070 -20.53740 -19.74253 -19.43883 -18.66693 -18.03341 -17.03889 -16.91884 -16.53964 -16.35041 -16.04631 -15.94703 -15.58537 -15.34987 -15.16610 -14.99117 -14.89363 -14.37406 -14.35347 -14.21595 -13.70766 -13.62364 -13.40878 -13.35619 -13.16792 -12.95575 -12.71197 -12.66087 -12.57988 -12.55628 -12.42380 -12.18261 -12.03194 -11.95491 -11.91405 -11.67041 -11.59278 -11.30435 -11.12797 -11.09719 -10.89115 -10.61336 -10.18802 -9.64113 -9.16684 -7.92111 -5.22161 0.96130 1.39777 1.40135 1.47711 1.57937 1.64933 1.90173 2.00527 2.53905 3.20376 3.28754 3.40749 3.48544 3.58674 3.63057 3.83191 3.86200 3.91910 3.93140 4.05319 4.14282 4.21663 4.23792 4.30316 4.37917 4.40086 4.42789 4.49112 4.67461 4.71120 4.72254 4.81409 4.86309 4.87697 4.93564 5.00145 5.01839 5.06397 5.09274 5.11921 5.13674 5.20573 5.28216 5.32659 5.38534 5.59184 5.68995 5.92932 6.01664 6.32947 6.48027 7.14490 7.19264 7.76646 7.96951 8.13575 9.29453 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.003098 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.483483 B = 9037.054256 C = 9892.800215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.192 3.808 3 N -0.744 5.744 4 C -0.193 4.193 5 H 0.070 0.930 6 C -0.060 4.060 7 N -0.985 5.985 8 Si 0.932 3.068 9 H -0.286 1.286 10 H -0.308 1.308 11 H -0.258 1.258 12 C -0.121 4.121 13 C 0.113 3.887 14 N -0.598 5.598 15 C 0.514 3.486 16 O -0.586 6.586 17 C -0.102 4.102 18 H 0.127 0.873 19 C -0.103 4.103 20 C -0.024 4.024 21 C 0.177 3.823 22 N -0.349 5.349 23 N -0.360 5.360 24 C 0.162 3.838 25 N -0.466 5.466 26 C 0.107 3.893 27 C -0.112 4.112 28 C 0.115 3.885 29 C -0.128 4.128 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.359 0.641 34 H 0.252 0.748 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.124 0.876 43 H 0.260 0.740 44 H 0.143 0.857 45 H 0.126 0.874 46 H 0.054 0.946 47 H 0.103 0.897 48 H 0.058 0.942 49 H 0.112 0.888 50 H 0.083 0.917 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.894 -23.249 0.088 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.103 3.897 3 N -0.388 5.388 4 C -0.324 4.324 5 H 0.088 0.912 6 C -0.251 4.251 7 N -0.637 5.637 8 Si 0.762 3.238 9 H -0.213 1.213 10 H -0.236 1.236 11 H -0.183 1.183 12 C -0.159 4.159 13 C -0.010 4.010 14 N -0.330 5.330 15 C 0.303 3.697 16 O -0.467 6.467 17 C -0.123 4.123 18 H 0.145 0.855 19 C -0.143 4.143 20 C -0.064 4.064 21 C -0.093 4.093 22 N -0.188 5.188 23 N -0.199 5.199 24 C -0.126 4.126 25 N -0.156 5.156 26 C -0.013 4.013 27 C -0.150 4.150 28 C -0.007 4.007 29 C -0.168 4.168 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.193 0.807 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.142 0.858 43 H 0.276 0.724 44 H 0.161 0.839 45 H 0.144 0.856 46 H 0.073 0.927 47 H 0.121 0.879 48 H 0.076 0.924 49 H 0.130 0.870 50 H 0.101 0.899 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.346 -23.049 0.039 23.455 hybrid contribution -0.420 1.147 1.357 1.826 sum 3.927 -21.902 1.397 22.295 Atomic orbital electron populations 1.22131 0.96544 1.00923 1.00866 1.19838 0.92680 0.83145 0.93997 1.42978 1.61452 1.09111 1.25217 1.18885 1.23027 0.91204 0.99324 0.91189 1.25207 1.03119 0.97129 0.99672 1.69833 1.52469 1.06586 1.34780 0.85760 0.79558 0.76919 0.81554 1.21252 1.23596 1.18260 1.22042 0.94143 1.01666 0.98094 1.21479 0.94745 0.97966 0.86808 1.48196 1.42390 1.34410 1.07956 1.21155 0.78064 0.78700 0.91753 1.90660 1.61926 1.58765 1.35370 1.20785 0.99873 0.96236 0.95391 0.85525 1.21169 0.97334 0.99957 0.95794 1.20635 0.97908 0.91113 0.96706 1.25199 0.93603 0.89369 1.01125 1.74136 1.09761 1.13156 1.21746 1.74408 1.27201 0.97662 1.20598 1.27107 0.82543 1.01398 1.01587 1.46534 1.12984 1.07110 1.48978 1.22859 0.78082 1.04175 0.96197 1.21435 1.03585 0.93131 0.96843 1.21917 0.94780 0.99224 0.84789 1.22274 0.94875 1.00498 0.99179 0.93949 0.94524 0.91055 0.80707 0.93930 0.89269 0.90567 0.89759 0.93090 0.93281 0.89716 0.87689 0.85762 0.72440 0.83921 0.85650 0.92678 0.87868 0.92406 0.87024 0.89871 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 8.44 71.98 0.61 -3.66 16 2 C 0.19 5.69 0.74 3.63 0.00 5.69 16 3 N -0.74 -29.07 3.93 -303.25 -1.19 -30.27 16 4 C -0.19 -9.47 9.16 84.04 0.77 -8.70 16 5 H 0.07 3.74 6.93 -2.92 -0.02 3.72 16 6 C -0.06 -3.27 5.50 84.86 0.47 -2.81 16 7 N -0.98 -59.51 13.97 21.65 0.30 -59.20 16 8 Si 0.93 43.39 27.74 68.60 1.90 45.30 16 9 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 10 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 11 H -0.26 -10.90 6.52 99.48 0.65 -10.25 16 12 C -0.12 -2.98 4.96 30.67 0.15 -2.83 16 13 C 0.11 3.01 6.16 86.36 0.53 3.54 16 14 N -0.60 -14.35 2.97 -818.07 -2.43 -16.78 16 15 C 0.51 11.88 6.44 87.65 0.56 12.45 16 16 O -0.59 -17.86 15.59 -3.04 -0.05 -17.91 16 17 C -0.10 -1.49 1.30 -12.91 -0.02 -1.51 16 18 H 0.13 1.09 5.53 -2.39 -0.01 1.08 16 19 C -0.10 -1.79 4.75 30.16 0.14 -1.65 16 20 C -0.02 -0.36 6.02 30.45 0.18 -0.18 16 21 C 0.18 3.61 7.02 138.82 0.98 4.59 16 22 N -0.35 -10.08 12.23 -50.00 -0.61 -10.69 16 23 N -0.36 -9.72 12.24 -60.29 -0.74 -10.46 16 24 C 0.16 2.63 12.83 180.26 2.31 4.94 16 25 N -0.47 -6.59 2.72 -515.34 -1.40 -8.00 16 26 C 0.11 0.57 6.53 86.40 0.56 1.14 16 27 C -0.11 -1.29 4.37 30.11 0.13 -1.16 16 28 C 0.11 2.67 5.47 86.51 0.47 3.14 16 29 C -0.13 -3.23 4.72 30.82 0.15 -3.08 16 30 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.04 1.25 7.27 -2.39 -0.02 1.23 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.36 14.29 4.32 -92.70 -0.40 13.89 16 34 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.08 2.29 7.00 -2.38 -0.02 2.27 16 38 H 0.05 1.53 6.94 -2.38 -0.02 1.51 16 39 H 0.05 1.11 7.91 -2.38 -0.02 1.09 16 40 H 0.08 1.59 7.41 -2.39 -0.02 1.58 16 41 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.12 1.05 7.89 -2.39 -0.02 1.03 16 43 H 0.26 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.14 -0.15 8.13 -2.39 -0.02 -0.17 16 45 H 0.13 0.13 7.87 -2.39 -0.02 0.11 16 46 H 0.05 0.98 8.08 -2.38 -0.02 0.96 16 47 H 0.10 1.08 7.91 -2.39 -0.02 1.06 16 48 H 0.06 1.77 7.74 -2.39 -0.02 1.75 16 49 H 0.11 1.71 5.30 -2.39 -0.01 1.69 16 50 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 51 H 0.06 1.86 7.31 -2.39 -0.02 1.85 16 Total: -1.00 -79.58 385.31 4.28 -75.30 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.49 Total: 22.80 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 8.01 Total: 9.91 kcal Atomic # 7 Polarization: -129.33 SS G_CDS: -6.07 Total: -135.39 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.05 Total: -17.91 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.90 Total: 45.30 kcal Total: -79.58 4.28 -75.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281507868.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.096 kcal (2) G-P(sol) polarization free energy of solvation -79.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds