Wall clock time and date at job start Wed Apr 1 2020 04:31:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38552 * 120.01551 * 2 1
4 4 C 1.40070 * 117.81748 * 180.26393 * 3 2 1
5 5 C 1.48142 * 121.14570 * 179.74342 * 4 3 2
6 6 O 1.21517 * 119.99492 * 231.10584 * 5 4 3
7 7 N 1.34769 * 120.00105 * 51.09947 * 5 4 3
8 8 C 1.46505 * 119.99842 * 5.12253 * 7 5 4
9 9 C 1.46497 * 120.00201 * 185.11630 * 7 5 4
10 10 C 1.52998 * 109.47191 * 270.00298 * 9 7 5
11 11 N 1.46898 * 109.46942 * 179.97438 * 10 9 7
12 12 C 1.46901 * 111.00128 * 170.00262 * 11 10 9
13 13 C 1.53242 * 109.34477 * 172.74605 * 12 11 10
14 14 N 1.47078 * 108.51926 * 53.82551 * 13 12 11
15 15 C 1.36943 * 120.88044 * 128.79418 * 14 13 12
16 16 H 1.07996 * 119.99995 * 210.98585 * 15 14 13
17 17 C 1.38810 * 119.99282 * 30.98880 * 15 14 13
18 18 N 1.31620 * 120.00874 * 10.13571 * 17 15 14
19 19 Si 1.86804 * 119.99462 * 190.13678 * 17 15 14
20 20 H 1.48500 * 109.47039 * 0.02562 * 19 17 15
21 21 H 1.48503 * 109.46898 * 120.00049 * 19 17 15
22 22 H 1.48504 * 109.47382 * 239.99794 * 19 17 15
23 23 C 1.47077 * 118.24021 * 308.81759 * 14 13 12
24 24 C 1.46893 * 111.00415 * 45.69869 * 11 10 9
25 25 C 1.39765 * 117.70854 * 359.47159 * 4 3 2
26 26 C 1.50697 * 120.17272 * 180.29192 * 25 4 3
27 27 N 1.31898 * 119.65382 * 0.27269 * 25 4 3
28 28 N 1.28278 * 122.32795 * 359.97438 * 27 25 4
29 29 H 1.09004 * 109.47074 * 270.27562 * 1 2 3
30 30 H 1.08993 * 109.47252 * 30.27333 * 1 2 3
31 31 H 1.08996 * 109.47229 * 150.27679 * 1 2 3
32 32 H 1.08004 * 121.09084 * 0.02562 * 3 2 1
33 33 H 1.09007 * 109.46871 * 275.20255 * 8 7 5
34 34 H 1.08993 * 109.47320 * 35.20699 * 8 7 5
35 35 H 1.09001 * 109.47071 * 155.20938 * 8 7 5
36 36 H 1.09005 * 109.47189 * 150.00051 * 9 7 5
37 37 H 1.09000 * 109.47008 * 30.00500 * 9 7 5
38 38 H 1.09000 * 109.47455 * 60.00210 * 10 9 7
39 39 H 1.08997 * 109.47454 * 299.99500 * 10 9 7
40 40 H 1.08999 * 109.49440 * 52.78293 * 12 11 10
41 41 H 1.09006 * 109.49312 * 292.70739 * 12 11 10
42 42 H 1.08998 * 109.62764 * 173.53736 * 13 12 11
43 43 H 1.09003 * 109.62553 * 293.92504 * 13 12 11
44 44 H 0.96991 * 120.00186 * 179.97438 * 18 17 15
45 45 H 1.08997 * 109.62835 * 170.89393 * 23 14 13
46 46 H 1.09000 * 109.63188 * 291.47800 * 23 14 13
47 47 H 1.09001 * 109.49638 * 67.29294 * 24 11 10
48 48 H 1.08996 * 109.51298 * 307.22786 * 24 11 10
49 49 H 1.08997 * 109.47093 * 94.45882 * 26 25 4
50 50 H 1.09003 * 109.47069 * 214.45611 * 26 25 4
51 51 H 1.08999 * 109.47409 * 334.45501 * 26 25 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2001 1.1997 0.0000
4 6 3.5998 1.1460 -0.0057
5 6 4.4140 2.3836 -0.0118
6 8 5.2965 2.5261 -0.8349
7 7 4.1759 3.3513 0.8954
8 6 3.1895 3.1339 1.9566
9 6 4.9035 4.6206 0.8206
10 6 6.1895 4.5206 1.6435
11 7 6.9193 5.7932 1.5679
12 6 8.0309 5.8204 2.5280
13 6 8.8726 7.0795 2.2944
14 7 7.9838 8.2505 2.3386
15 6 8.2757 9.3248 3.1361
16 1 7.4771 9.9150 3.5606
17 6 9.5982 9.6550 3.3988
18 7 10.5684 9.0685 2.7300
19 14 10.0009 10.9319 4.7014
20 1 8.7417 11.4376 5.3048
21 1 10.8418 10.3132 5.7576
22 1 10.7394 12.0593 4.0779
23 6 6.7728 8.2369 1.5040
24 6 6.0138 6.9322 1.7687
25 6 4.2017 -0.1154 0.0004
26 6 5.7037 -0.2378 0.0014
27 7 3.4483 -1.1980 0.0057
28 7 2.1668 -1.1419 0.0060
29 1 -0.3633 0.0049 1.0277
30 1 -0.3633 0.8875 -0.5180
31 1 -0.3633 -0.8924 -0.5095
32 1 1.6783 2.1453 0.0004
33 1 2.1949 3.3792 1.5839
34 1 3.2139 2.0894 2.2669
35 1 3.4257 3.7717 2.8084
36 1 4.2794 5.4212 1.2176
37 1 5.1529 4.8357 -0.2185
38 1 6.8137 3.7201 1.2465
39 1 5.9401 4.3056 2.6826
40 1 8.6530 4.9362 2.3894
41 1 7.6344 5.8311 3.5433
42 1 9.6290 7.1642 3.0747
43 1 9.3570 7.0204 1.3197
44 1 11.4923 9.2996 2.9134
45 1 6.1410 9.0869 1.7617
46 1 7.0526 8.2907 0.4519
47 1 5.6453 6.9276 2.7946
48 1 5.1727 6.8546 1.0798
49 1 6.0591 -0.3421 1.0265
50 1 5.9972 -1.1146 -0.5759
51 1 6.1414 0.6547 -0.4459
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001317819300.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:31:55
Heat of formation + Delta-G solvation = 66.294959 kcal
Electronic energy + Delta-G solvation = -30760.156497 eV
Core-core repulsion = 26696.477234 eV
Total energy + Delta-G solvation = -4063.679264 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.36 seconds
Orbital eigenvalues (eV)
-41.84148 -40.05358 -38.25653 -36.24134 -34.91724 -34.58679 -33.85850 -31.52820
-30.60498 -30.13692 -29.01429 -27.35877 -27.22150 -26.37493 -24.90177 -23.72671
-23.15340 -22.45211 -21.47531 -19.85402 -19.11109 -18.25287 -17.72495 -16.97592
-16.52079 -16.28838 -15.90762 -15.58552 -15.07442 -14.90485 -14.49729 -14.32428
-14.07669 -13.99639 -13.92347 -13.71944 -13.53495 -13.39070 -13.32382 -13.03102
-12.98533 -12.86641 -12.75883 -12.48958 -12.27283 -11.99733 -11.42577 -11.41746
-11.16351 -10.96868 -10.84865 -10.73896 -10.58400 -10.48175 -10.33247 -10.10151
-9.90979 -9.89507 -9.79478 -9.66017 -9.04605 -8.53293 -7.85670 -6.61386
-5.79151 -3.26796 -0.01103 0.37296 2.11388 2.43575 3.00989 3.34787
3.42162 3.44119 3.45919 3.70175 3.88162 3.99388 4.25831 4.37772
4.47798 4.57607 4.62884 4.75827 4.82509 4.91119 4.99045 5.02255
5.09391 5.19473 5.21909 5.27087 5.31418 5.36750 5.40606 5.45107
5.58378 5.66401 5.72413 5.82014 5.85576 5.88939 5.94734 6.07923
6.15088 6.22772 6.31538 6.51619 6.67544 6.84087 6.91768 7.23205
7.54156 7.61992 7.65798 7.70845 7.79707 8.24122 8.45285 9.21036
9.82290 10.42933 11.29316
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.027265 B = 0.001951 C = 0.001883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1026.715390 B =14347.049901 C =14867.479835
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.100 4.100
2 C 0.059 3.941
3 C -0.083 4.083
4 C -0.119 4.119
5 C 0.563 3.437
6 O -0.507 6.507
7 N -0.604 5.604
8 C 0.074 3.926
9 C 0.112 3.888
10 C 0.043 3.957
11 N -0.528 5.528
12 C 0.037 3.963
13 C 0.179 3.821
14 N -0.595 5.595
15 C -0.253 4.253
16 H 0.064 0.936
17 C 0.003 3.997
18 N -0.904 5.904
19 Si 0.904 3.096
20 H -0.278 1.278
21 H -0.289 1.289
22 H -0.289 1.289
23 C 0.148 3.852
24 C 0.036 3.964
25 C 0.111 3.889
26 C -0.120 4.120
27 N -0.237 5.237
28 N -0.228 5.228
29 H 0.086 0.914
30 H 0.080 0.920
31 H 0.085 0.915
32 H 0.156 0.844
33 H 0.061 0.939
34 H 0.066 0.934
35 H 0.082 0.918
36 H 0.086 0.914
37 H 0.097 0.903
38 H 0.074 0.926
39 H 0.026 0.974
40 H 0.060 0.940
41 H 0.024 0.976
42 H 0.088 0.912
43 H 0.028 0.972
44 H 0.254 0.746
45 H 0.055 0.945
46 H 0.026 0.974
47 H 0.027 0.973
48 H 0.064 0.936
49 H 0.086 0.914
50 H 0.088 0.912
51 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.329 -17.146 -3.081 26.773
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.085 4.085
3 C -0.113 4.113
4 C -0.133 4.133
5 C 0.349 3.651
6 O -0.381 6.381
7 N -0.338 5.338
8 C -0.069 4.069
9 C -0.009 4.009
10 C -0.086 4.086
11 N -0.253 5.253
12 C -0.092 4.092
13 C 0.053 3.947
14 N -0.319 5.319
15 C -0.383 4.383
16 H 0.082 0.918
17 C -0.195 4.195
18 N -0.548 5.548
19 Si 0.734 3.266
20 H -0.203 1.203
21 H -0.216 1.216
22 H -0.216 1.216
23 C 0.021 3.979
24 C -0.093 4.093
25 C -0.034 4.034
26 C -0.178 4.178
27 N -0.079 5.079
28 N -0.071 5.071
29 H 0.104 0.896
30 H 0.099 0.901
31 H 0.103 0.897
32 H 0.173 0.827
33 H 0.080 0.920
34 H 0.085 0.915
35 H 0.101 0.899
36 H 0.105 0.895
37 H 0.115 0.885
38 H 0.093 0.907
39 H 0.044 0.956
40 H 0.079 0.921
41 H 0.042 0.958
42 H 0.106 0.894
43 H 0.046 0.954
44 H 0.064 0.936
45 H 0.073 0.927
46 H 0.044 0.956
47 H 0.045 0.955
48 H 0.083 0.917
49 H 0.104 0.896
50 H 0.106 0.894
51 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -19.531 -18.613 -3.952 27.268
hybrid contribution -0.094 2.101 1.595 2.639
sum -19.624 -16.513 -2.356 25.755
Atomic orbital electron populations
1.20698 0.86874 1.04376 1.03887 1.22870 0.99323 0.89879 0.96445
1.22513 0.92924 1.00573 0.95269 1.21083 0.94698 0.95583 1.01961
1.17985 0.83162 0.82312 0.81671 1.90840 1.30806 1.78452 1.38033
1.47811 1.41009 1.16112 1.28832 1.21945 0.91688 1.02553 0.90732
1.21848 0.92914 0.82865 1.03309 1.22412 0.94544 0.94240 0.97436
1.62021 1.10417 1.00550 1.52344 1.22918 0.92836 1.01399 0.92025
1.20854 0.91208 0.81785 1.00817 1.44070 1.23455 1.16175 1.48183
1.19205 0.91107 1.06010 1.21937 0.91807 1.25187 0.96412 0.98598
0.99345 1.69976 0.98933 1.44714 1.41209 0.86196 0.78041 0.81182
0.81170 1.20311 1.21608 1.21594 1.20988 0.89320 0.93014 0.94538
1.22768 0.95031 0.93216 0.98319 1.23038 0.99549 0.88469 0.92349
1.20992 0.86710 1.05940 1.04130 1.73058 0.98950 1.26158 1.09755
1.72824 1.01758 1.24923 1.07617 0.89577 0.90068 0.89650 0.82654
0.92026 0.91534 0.89914 0.89541 0.88517 0.90730 0.95566 0.92139
0.95755 0.89378 0.95421 0.93591 0.92662 0.95579 0.95512 0.91743
0.89583 0.89355 0.88032
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.41 10.19 36.01 0.37 -0.04 16
2 C 0.06 0.46 6.86 -82.45 -0.57 -0.10 16
3 C -0.08 -0.61 8.10 -38.78 -0.31 -0.92 16
4 C -0.12 -1.17 4.66 -104.57 -0.49 -1.66 16
5 C 0.56 6.35 6.70 -12.20 -0.08 6.27 16
6 O -0.51 -7.48 14.66 5.35 0.08 -7.40 16
7 N -0.60 -5.78 2.87 -182.58 -0.52 -6.31 16
8 C 0.07 0.45 9.16 59.85 0.55 1.00 16
9 C 0.11 1.28 4.60 -4.04 -0.02 1.26 16
10 C 0.04 0.60 5.59 -3.83 -0.02 0.58 16
11 N -0.53 -9.21 4.78 -234.32 -1.12 -10.33 16
12 C 0.04 0.73 5.58 -3.70 -0.02 0.71 16
13 C 0.18 4.34 5.36 -3.60 -0.02 4.32 16
14 N -0.60 -14.99 3.03 -172.01 -0.52 -15.51 16
15 C -0.25 -6.90 9.62 -15.06 -0.14 -7.05 16
16 H 0.06 1.71 7.85 -52.49 -0.41 1.29 16
17 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16
18 N -0.90 -26.22 11.06 55.49 0.61 -25.60 16
19 Si 0.90 21.53 29.57 -169.99 -5.03 16.50 16
20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
23 C 0.15 3.09 6.69 -3.60 -0.02 3.07 16
24 C 0.04 0.61 5.04 -3.70 -0.02 0.59 16
25 C 0.11 1.20 6.90 -81.99 -0.57 0.63 16
26 C -0.12 -1.15 9.92 36.00 0.36 -0.80 16
27 N -0.24 -2.83 11.42 33.81 0.39 -2.45 16
28 N -0.23 -2.50 11.40 33.58 0.38 -2.12 16
29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16
30 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16
31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.16 0.68 7.00 -52.48 -0.37 0.32 16
33 H 0.06 0.25 7.15 -51.93 -0.37 -0.13 16
34 H 0.07 0.39 6.98 -51.93 -0.36 0.03 16
35 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16
36 H 0.09 0.86 6.11 -51.93 -0.32 0.54 16
37 H 0.10 1.28 7.50 -51.93 -0.39 0.89 16
38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
39 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16
40 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16
41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
42 H 0.09 2.35 6.24 -51.93 -0.32 2.03 16
43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16
44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16
45 H 0.05 1.10 7.95 -51.93 -0.41 0.68 16
46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
47 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16
48 H 0.06 0.89 5.73 -51.93 -0.30 0.59 16
49 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
50 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
51 H 0.10 1.13 5.58 -51.93 -0.29 0.84 16
LS Contribution 402.13 15.07 6.06 6.06
Total: -1.00 -33.53 402.13 -8.93 -42.46
By element:
Atomic # 1 Polarization: 4.99 SS G_CDS: -8.16 Total: -3.17 kcal
Atomic # 6 Polarization: 8.97 SS G_CDS: -1.10 Total: 7.87 kcal
Atomic # 7 Polarization: -61.54 SS G_CDS: -0.78 Total: -62.32 kcal
Atomic # 8 Polarization: -7.48 SS G_CDS: 0.08 Total: -7.40 kcal
Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -33.53 -8.93 -42.46 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317819300.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.751 kcal
(2) G-P(sol) polarization free energy of solvation -33.528 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.224 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.295 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.36 seconds