Wall clock time and date at job start Wed Apr 1 2020 04:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38552 * 120.01551 * 2 1 4 4 C 1.40070 * 117.81748 * 180.26393 * 3 2 1 5 5 C 1.48142 * 121.14570 * 179.74342 * 4 3 2 6 6 O 1.21517 * 119.99492 * 231.10584 * 5 4 3 7 7 N 1.34769 * 120.00105 * 51.09947 * 5 4 3 8 8 C 1.46505 * 119.99842 * 5.12253 * 7 5 4 9 9 C 1.46497 * 120.00201 * 185.11630 * 7 5 4 10 10 C 1.52998 * 109.47191 * 270.00298 * 9 7 5 11 11 N 1.46898 * 109.46942 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00128 * 170.00262 * 11 10 9 13 13 C 1.53242 * 109.34477 * 172.74605 * 12 11 10 14 14 N 1.47078 * 108.51926 * 53.82551 * 13 12 11 15 15 C 1.36943 * 120.88044 * 128.79418 * 14 13 12 16 16 H 1.07996 * 119.99995 * 210.98585 * 15 14 13 17 17 C 1.38810 * 119.99282 * 30.98880 * 15 14 13 18 18 N 1.31620 * 120.00874 * 10.13571 * 17 15 14 19 19 Si 1.86804 * 119.99462 * 190.13678 * 17 15 14 20 20 H 1.48500 * 109.47039 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46898 * 120.00049 * 19 17 15 22 22 H 1.48504 * 109.47382 * 239.99794 * 19 17 15 23 23 C 1.47077 * 118.24021 * 308.81759 * 14 13 12 24 24 C 1.46893 * 111.00415 * 45.69869 * 11 10 9 25 25 C 1.39765 * 117.70854 * 359.47159 * 4 3 2 26 26 C 1.50697 * 120.17272 * 180.29192 * 25 4 3 27 27 N 1.31898 * 119.65382 * 0.27269 * 25 4 3 28 28 N 1.28278 * 122.32795 * 359.97438 * 27 25 4 29 29 H 1.09004 * 109.47074 * 270.27562 * 1 2 3 30 30 H 1.08993 * 109.47252 * 30.27333 * 1 2 3 31 31 H 1.08996 * 109.47229 * 150.27679 * 1 2 3 32 32 H 1.08004 * 121.09084 * 0.02562 * 3 2 1 33 33 H 1.09007 * 109.46871 * 275.20255 * 8 7 5 34 34 H 1.08993 * 109.47320 * 35.20699 * 8 7 5 35 35 H 1.09001 * 109.47071 * 155.20938 * 8 7 5 36 36 H 1.09005 * 109.47189 * 150.00051 * 9 7 5 37 37 H 1.09000 * 109.47008 * 30.00500 * 9 7 5 38 38 H 1.09000 * 109.47455 * 60.00210 * 10 9 7 39 39 H 1.08997 * 109.47454 * 299.99500 * 10 9 7 40 40 H 1.08999 * 109.49440 * 52.78293 * 12 11 10 41 41 H 1.09006 * 109.49312 * 292.70739 * 12 11 10 42 42 H 1.08998 * 109.62764 * 173.53736 * 13 12 11 43 43 H 1.09003 * 109.62553 * 293.92504 * 13 12 11 44 44 H 0.96991 * 120.00186 * 179.97438 * 18 17 15 45 45 H 1.08997 * 109.62835 * 170.89393 * 23 14 13 46 46 H 1.09000 * 109.63188 * 291.47800 * 23 14 13 47 47 H 1.09001 * 109.49638 * 67.29294 * 24 11 10 48 48 H 1.08996 * 109.51298 * 307.22786 * 24 11 10 49 49 H 1.08997 * 109.47093 * 94.45882 * 26 25 4 50 50 H 1.09003 * 109.47069 * 214.45611 * 26 25 4 51 51 H 1.08999 * 109.47409 * 334.45501 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 -0.0057 5 6 4.4140 2.3836 -0.0118 6 8 5.2965 2.5261 -0.8349 7 7 4.1759 3.3513 0.8954 8 6 3.1895 3.1339 1.9566 9 6 4.9035 4.6206 0.8206 10 6 6.1895 4.5206 1.6435 11 7 6.9193 5.7932 1.5679 12 6 8.0309 5.8204 2.5280 13 6 8.8726 7.0795 2.2944 14 7 7.9838 8.2505 2.3386 15 6 8.2757 9.3248 3.1361 16 1 7.4771 9.9150 3.5606 17 6 9.5982 9.6550 3.3988 18 7 10.5684 9.0685 2.7300 19 14 10.0009 10.9319 4.7014 20 1 8.7417 11.4376 5.3048 21 1 10.8418 10.3132 5.7576 22 1 10.7394 12.0593 4.0779 23 6 6.7728 8.2369 1.5040 24 6 6.0138 6.9322 1.7687 25 6 4.2017 -0.1154 0.0004 26 6 5.7037 -0.2378 0.0014 27 7 3.4483 -1.1980 0.0057 28 7 2.1668 -1.1419 0.0060 29 1 -0.3633 0.0049 1.0277 30 1 -0.3633 0.8875 -0.5180 31 1 -0.3633 -0.8924 -0.5095 32 1 1.6783 2.1453 0.0004 33 1 2.1949 3.3792 1.5839 34 1 3.2139 2.0894 2.2669 35 1 3.4257 3.7717 2.8084 36 1 4.2794 5.4212 1.2176 37 1 5.1529 4.8357 -0.2185 38 1 6.8137 3.7201 1.2465 39 1 5.9401 4.3056 2.6826 40 1 8.6530 4.9362 2.3894 41 1 7.6344 5.8311 3.5433 42 1 9.6290 7.1642 3.0747 43 1 9.3570 7.0204 1.3197 44 1 11.4923 9.2996 2.9134 45 1 6.1410 9.0869 1.7617 46 1 7.0526 8.2907 0.4519 47 1 5.6453 6.9276 2.7946 48 1 5.1727 6.8546 1.0798 49 1 6.0591 -0.3421 1.0265 50 1 5.9972 -1.1146 -0.5759 51 1 6.1414 0.6547 -0.4459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317819300.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:55 Heat of formation + Delta-G solvation = 66.294959 kcal Electronic energy + Delta-G solvation = -30760.156497 eV Core-core repulsion = 26696.477234 eV Total energy + Delta-G solvation = -4063.679264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.84148 -40.05358 -38.25653 -36.24134 -34.91724 -34.58679 -33.85850 -31.52820 -30.60498 -30.13692 -29.01429 -27.35877 -27.22150 -26.37493 -24.90177 -23.72671 -23.15340 -22.45211 -21.47531 -19.85402 -19.11109 -18.25287 -17.72495 -16.97592 -16.52079 -16.28838 -15.90762 -15.58552 -15.07442 -14.90485 -14.49729 -14.32428 -14.07669 -13.99639 -13.92347 -13.71944 -13.53495 -13.39070 -13.32382 -13.03102 -12.98533 -12.86641 -12.75883 -12.48958 -12.27283 -11.99733 -11.42577 -11.41746 -11.16351 -10.96868 -10.84865 -10.73896 -10.58400 -10.48175 -10.33247 -10.10151 -9.90979 -9.89507 -9.79478 -9.66017 -9.04605 -8.53293 -7.85670 -6.61386 -5.79151 -3.26796 -0.01103 0.37296 2.11388 2.43575 3.00989 3.34787 3.42162 3.44119 3.45919 3.70175 3.88162 3.99388 4.25831 4.37772 4.47798 4.57607 4.62884 4.75827 4.82509 4.91119 4.99045 5.02255 5.09391 5.19473 5.21909 5.27087 5.31418 5.36750 5.40606 5.45107 5.58378 5.66401 5.72413 5.82014 5.85576 5.88939 5.94734 6.07923 6.15088 6.22772 6.31538 6.51619 6.67544 6.84087 6.91768 7.23205 7.54156 7.61992 7.65798 7.70845 7.79707 8.24122 8.45285 9.21036 9.82290 10.42933 11.29316 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.001951 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.715390 B =14347.049901 C =14867.479835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.059 3.941 3 C -0.083 4.083 4 C -0.119 4.119 5 C 0.563 3.437 6 O -0.507 6.507 7 N -0.604 5.604 8 C 0.074 3.926 9 C 0.112 3.888 10 C 0.043 3.957 11 N -0.528 5.528 12 C 0.037 3.963 13 C 0.179 3.821 14 N -0.595 5.595 15 C -0.253 4.253 16 H 0.064 0.936 17 C 0.003 3.997 18 N -0.904 5.904 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.148 3.852 24 C 0.036 3.964 25 C 0.111 3.889 26 C -0.120 4.120 27 N -0.237 5.237 28 N -0.228 5.228 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.026 0.974 40 H 0.060 0.940 41 H 0.024 0.976 42 H 0.088 0.912 43 H 0.028 0.972 44 H 0.254 0.746 45 H 0.055 0.945 46 H 0.026 0.974 47 H 0.027 0.973 48 H 0.064 0.936 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.329 -17.146 -3.081 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.085 4.085 3 C -0.113 4.113 4 C -0.133 4.133 5 C 0.349 3.651 6 O -0.381 6.381 7 N -0.338 5.338 8 C -0.069 4.069 9 C -0.009 4.009 10 C -0.086 4.086 11 N -0.253 5.253 12 C -0.092 4.092 13 C 0.053 3.947 14 N -0.319 5.319 15 C -0.383 4.383 16 H 0.082 0.918 17 C -0.195 4.195 18 N -0.548 5.548 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.216 1.216 23 C 0.021 3.979 24 C -0.093 4.093 25 C -0.034 4.034 26 C -0.178 4.178 27 N -0.079 5.079 28 N -0.071 5.071 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.173 0.827 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.106 0.894 43 H 0.046 0.954 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.044 0.956 47 H 0.045 0.955 48 H 0.083 0.917 49 H 0.104 0.896 50 H 0.106 0.894 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.531 -18.613 -3.952 27.268 hybrid contribution -0.094 2.101 1.595 2.639 sum -19.624 -16.513 -2.356 25.755 Atomic orbital electron populations 1.20698 0.86874 1.04376 1.03887 1.22870 0.99323 0.89879 0.96445 1.22513 0.92924 1.00573 0.95269 1.21083 0.94698 0.95583 1.01961 1.17985 0.83162 0.82312 0.81671 1.90840 1.30806 1.78452 1.38033 1.47811 1.41009 1.16112 1.28832 1.21945 0.91688 1.02553 0.90732 1.21848 0.92914 0.82865 1.03309 1.22412 0.94544 0.94240 0.97436 1.62021 1.10417 1.00550 1.52344 1.22918 0.92836 1.01399 0.92025 1.20854 0.91208 0.81785 1.00817 1.44070 1.23455 1.16175 1.48183 1.19205 0.91107 1.06010 1.21937 0.91807 1.25187 0.96412 0.98598 0.99345 1.69976 0.98933 1.44714 1.41209 0.86196 0.78041 0.81182 0.81170 1.20311 1.21608 1.21594 1.20988 0.89320 0.93014 0.94538 1.22768 0.95031 0.93216 0.98319 1.23038 0.99549 0.88469 0.92349 1.20992 0.86710 1.05940 1.04130 1.73058 0.98950 1.26158 1.09755 1.72824 1.01758 1.24923 1.07617 0.89577 0.90068 0.89650 0.82654 0.92026 0.91534 0.89914 0.89541 0.88517 0.90730 0.95566 0.92139 0.95755 0.89378 0.95421 0.93591 0.92662 0.95579 0.95512 0.91743 0.89583 0.89355 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.41 10.19 36.01 0.37 -0.04 16 2 C 0.06 0.46 6.86 -82.45 -0.57 -0.10 16 3 C -0.08 -0.61 8.10 -38.78 -0.31 -0.92 16 4 C -0.12 -1.17 4.66 -104.57 -0.49 -1.66 16 5 C 0.56 6.35 6.70 -12.20 -0.08 6.27 16 6 O -0.51 -7.48 14.66 5.35 0.08 -7.40 16 7 N -0.60 -5.78 2.87 -182.58 -0.52 -6.31 16 8 C 0.07 0.45 9.16 59.85 0.55 1.00 16 9 C 0.11 1.28 4.60 -4.04 -0.02 1.26 16 10 C 0.04 0.60 5.59 -3.83 -0.02 0.58 16 11 N -0.53 -9.21 4.78 -234.32 -1.12 -10.33 16 12 C 0.04 0.73 5.58 -3.70 -0.02 0.71 16 13 C 0.18 4.34 5.36 -3.60 -0.02 4.32 16 14 N -0.60 -14.99 3.03 -172.01 -0.52 -15.51 16 15 C -0.25 -6.90 9.62 -15.06 -0.14 -7.05 16 16 H 0.06 1.71 7.85 -52.49 -0.41 1.29 16 17 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16 18 N -0.90 -26.22 11.06 55.49 0.61 -25.60 16 19 Si 0.90 21.53 29.57 -169.99 -5.03 16.50 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.15 3.09 6.69 -3.60 -0.02 3.07 16 24 C 0.04 0.61 5.04 -3.70 -0.02 0.59 16 25 C 0.11 1.20 6.90 -81.99 -0.57 0.63 16 26 C -0.12 -1.15 9.92 36.00 0.36 -0.80 16 27 N -0.24 -2.83 11.42 33.81 0.39 -2.45 16 28 N -0.23 -2.50 11.40 33.58 0.38 -2.12 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.16 0.68 7.00 -52.48 -0.37 0.32 16 33 H 0.06 0.25 7.15 -51.93 -0.37 -0.13 16 34 H 0.07 0.39 6.98 -51.93 -0.36 0.03 16 35 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16 36 H 0.09 0.86 6.11 -51.93 -0.32 0.54 16 37 H 0.10 1.28 7.50 -51.93 -0.39 0.89 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 40 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 2.35 6.24 -51.93 -0.32 2.03 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.05 1.10 7.95 -51.93 -0.41 0.68 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.89 5.73 -51.93 -0.30 0.59 16 49 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.10 1.13 5.58 -51.93 -0.29 0.84 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -33.53 402.13 -8.93 -42.46 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -8.16 Total: -3.17 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -1.10 Total: 7.87 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.78 Total: -62.32 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.08 Total: -7.40 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.53 -8.93 -42.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317819300.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.751 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds