Wall clock time and date at job start Wed Apr 1 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30825 * 126.47072 * 2 1 4 4 N 1.28907 * 109.74476 * 180.02562 * 3 2 1 5 5 C 1.29834 * 109.47863 * 0.02767 * 4 3 2 6 6 N 1.34703 * 126.45863 * 179.97438 * 2 1 3 7 7 C 1.46247 * 128.85683 * 359.86528 * 6 2 1 8 8 C 1.53309 * 108.73337 * 197.15065 * 7 6 2 9 9 H 1.09003 * 109.45512 * 69.69772 * 8 7 6 10 10 C 1.50700 * 109.45504 * 189.64955 * 8 7 6 11 11 O 1.21283 * 120.00240 * 93.73887 * 10 8 7 12 12 N 1.34774 * 120.00068 * 273.74416 * 10 8 7 13 13 C 1.47026 * 125.64874 * 355.01343 * 12 10 8 14 14 C 1.54320 * 107.27235 * 181.10710 * 13 12 10 15 15 C 1.55158 * 102.94415 * 22.19711 * 14 13 12 16 16 H 1.09007 * 111.00292 * 82.60275 * 15 14 13 17 17 C 1.52996 * 111.00807 * 206.42153 * 15 14 13 18 18 N 1.46497 * 109.47129 * 293.54712 * 17 15 14 19 19 C 1.46501 * 120.00042 * 269.99900 * 18 17 15 20 20 C 1.36938 * 120.00386 * 89.99685 * 18 17 15 21 21 H 1.08008 * 120.00052 * 333.18581 * 20 18 17 22 22 C 1.38809 * 120.00129 * 152.90260 * 20 18 17 23 23 N 1.31609 * 120.00105 * 350.13327 * 22 20 18 24 24 Si 1.86808 * 119.99762 * 170.13062 * 22 20 18 25 25 H 1.48493 * 109.47063 * 90.00334 * 24 22 20 26 26 H 1.48504 * 109.46935 * 210.00193 * 24 22 20 27 27 H 1.48500 * 109.47135 * 329.99948 * 24 22 20 28 28 C 1.47423 * 125.65090 * 175.07407 * 12 10 8 29 29 C 1.53147 * 109.56456 * 309.67305 * 8 7 6 30 30 C 1.50800 * 128.52743 * 179.90947 * 5 4 3 31 31 H 1.09003 * 109.47210 * 90.01970 * 1 2 3 32 32 H 1.09001 * 109.46947 * 210.02683 * 1 2 3 33 33 H 1.09005 * 109.46846 * 330.02159 * 1 2 3 34 34 H 1.09000 * 109.61161 * 77.36359 * 7 6 2 35 35 H 1.09000 * 109.56885 * 316.91642 * 7 6 2 36 36 H 1.09004 * 109.87909 * 61.69422 * 13 12 10 37 37 H 1.08994 * 109.88822 * 300.53020 * 13 12 10 38 38 H 1.09002 * 110.72572 * 263.83158 * 14 13 12 39 39 H 1.09002 * 110.86825 * 140.63172 * 14 13 12 40 40 H 1.08996 * 109.47032 * 173.54316 * 17 15 14 41 41 H 1.09005 * 109.46805 * 53.54560 * 17 15 14 42 42 H 1.08998 * 109.46945 * 272.33721 * 19 18 17 43 43 H 1.09001 * 109.46782 * 32.33714 * 19 18 17 44 44 H 1.08996 * 109.47171 * 152.33861 * 19 18 17 45 45 H 0.97004 * 120.00140 * 180.02562 * 23 22 20 46 46 H 1.09000 * 110.36758 * 36.98765 * 28 12 10 47 47 H 1.08996 * 110.37027 * 274.66307 * 28 12 10 48 48 H 1.08998 * 109.49781 * 189.39850 * 29 8 7 49 49 H 1.08994 * 109.49546 * 309.49544 * 29 8 7 50 50 H 1.09000 * 109.73289 * 76.20778 * 30 5 4 51 51 H 1.09002 * 109.77177 * 315.54833 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0520 0.0000 4 7 3.5192 0.6811 -0.0005 5 6 3.5816 -0.6158 -0.0015 6 7 2.3075 -1.0834 0.0005 7 6 1.9368 -2.4981 0.0038 8 6 3.1548 -3.3253 0.4312 9 1 3.3615 -3.1484 1.4867 10 6 2.8686 -4.7889 0.2143 11 8 3.2030 -5.3253 -0.8208 12 7 2.2411 -5.5017 1.1705 13 6 1.8747 -5.0078 2.5060 14 6 1.2048 -6.1765 3.2589 15 6 1.7398 -7.4251 2.5092 16 1 2.7287 -7.7050 2.8724 17 6 0.7631 -8.5968 2.6284 18 7 0.6992 -9.0393 4.0234 19 6 1.6169 -10.0740 4.5065 20 6 -0.2183 -8.4857 4.8761 21 1 -0.5818 -7.4837 4.7017 22 6 -0.6855 -9.2144 5.9612 23 7 -0.4015 -10.4953 6.0650 24 14 -1.7174 -8.3770 7.2740 25 1 -3.1538 -8.4708 6.9092 26 1 -1.4939 -9.0461 8.5808 27 1 -1.3247 -6.9485 7.3758 28 6 1.8093 -6.9063 1.0512 29 6 4.3718 -2.9145 -0.4028 30 6 4.8050 -1.4974 -0.0043 31 1 -0.3634 -0.0004 -1.0277 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3633 0.8902 0.5135 34 1 1.6249 -2.7969 -0.9970 35 1 1.1199 -2.6598 0.7072 36 1 1.1758 -4.1764 2.4149 37 1 2.7686 -4.6864 3.0405 38 1 0.1194 -6.1147 3.1796 39 1 1.5133 -6.1927 4.3042 40 1 1.1051 -9.4201 2.0013 41 1 -0.2273 -8.2788 2.3023 42 1 1.1823 -11.0574 4.3273 43 1 2.5660 -9.9941 3.9764 44 1 1.7851 -9.9404 5.5750 45 1 -0.7283 -11.0047 6.8231 46 1 2.5383 -7.4799 0.4788 47 1 0.8275 -6.9627 0.5812 48 1 5.1903 -3.6105 -0.2191 49 1 4.1102 -2.9309 -1.4607 50 1 5.2484 -1.5147 0.9913 51 1 5.5310 -1.1184 -0.7237 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317864508.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:48 Heat of formation + Delta-G solvation = 62.067008 kcal Electronic energy + Delta-G solvation = -31138.755329 eV Core-core repulsion = 27074.892728 eV Total energy + Delta-G solvation = -4063.862601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.64077 -40.52797 -38.21664 -36.92820 -35.47129 -34.47662 -32.58956 -31.83932 -31.05009 -30.37522 -29.24518 -27.71871 -26.33050 -25.82603 -25.07673 -23.66691 -22.79457 -21.72252 -21.46882 -20.26442 -19.81274 -19.05348 -17.69853 -17.27272 -16.91899 -16.74405 -15.96025 -15.74822 -15.27444 -15.00029 -14.74093 -14.69577 -14.23442 -14.12412 -13.73627 -13.55375 -13.43687 -13.31971 -13.10634 -13.02209 -12.94596 -12.61534 -12.35085 -12.27097 -11.97827 -11.84421 -11.66062 -11.48849 -11.42271 -11.17718 -10.91711 -10.79685 -10.60639 -10.51470 -10.48371 -10.41824 -10.27622 -10.06057 -9.93058 -9.90001 -9.26505 -8.80033 -8.60373 -6.76814 -5.82636 -3.31462 1.47929 1.91501 2.33424 2.57097 2.73067 3.29771 3.36208 3.37828 3.70706 3.87679 3.92276 3.99766 4.11885 4.38972 4.46616 4.52150 4.57593 4.67476 4.73624 4.81660 4.86777 4.97773 5.03400 5.08456 5.19608 5.25498 5.32014 5.36216 5.38035 5.40934 5.50963 5.60493 5.62767 5.64303 5.74559 5.83092 5.88218 5.98222 6.06348 6.18916 6.38757 6.43006 6.50325 6.58460 6.71029 6.81299 7.29090 7.31321 7.62543 7.71962 7.85181 8.34162 8.45580 9.15607 9.78185 10.29743 11.23769 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.002376 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.642991 B =11782.880778 C =12977.486315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.299 5.299 4 N -0.290 5.290 5 C 0.176 3.824 6 N -0.469 5.469 7 C 0.119 3.881 8 C -0.119 4.119 9 H 0.105 0.895 10 C 0.535 3.465 11 O -0.535 6.535 12 N -0.611 5.611 13 C 0.093 3.907 14 C -0.110 4.110 15 C -0.117 4.117 16 H 0.076 0.924 17 C 0.161 3.839 18 N -0.598 5.598 19 C 0.162 3.838 20 C -0.257 4.257 21 H 0.068 0.932 22 C 0.004 3.996 23 N -0.905 5.905 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.108 3.892 29 C -0.107 4.107 30 C -0.033 4.033 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.050 0.950 42 H 0.021 0.979 43 H -0.006 1.006 44 H 0.050 0.950 45 H 0.253 0.747 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.097 0.903 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 14.920 -11.527 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 N -0.140 5.140 4 N -0.129 5.129 5 C -0.091 4.091 6 N -0.160 5.160 7 C -0.004 4.004 8 C -0.141 4.141 9 H 0.123 0.877 10 C 0.322 3.678 11 O -0.412 6.412 12 N -0.344 5.344 13 C -0.029 4.029 14 C -0.148 4.148 15 C -0.139 4.139 16 H 0.094 0.906 17 C 0.033 3.967 18 N -0.320 5.320 19 C 0.018 3.982 20 C -0.387 4.387 21 H 0.086 0.914 22 C -0.195 4.195 23 N -0.550 5.550 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.014 4.014 29 C -0.146 4.146 30 C -0.073 4.073 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.039 0.961 43 H 0.012 0.988 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.116 0.884 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.225 15.972 -11.973 20.909 hybrid contribution -1.067 -0.986 0.987 1.757 sum 5.158 14.986 -10.986 19.283 Atomic orbital electron populations 1.20243 0.83579 1.04723 1.04168 1.24700 0.97131 0.82658 1.04270 1.74491 0.96119 1.23615 1.19748 1.74057 1.12280 1.07983 1.18622 1.24739 0.87016 0.92555 1.04811 1.45927 1.07123 1.08073 1.54911 1.21802 0.97769 0.76320 1.04552 1.21631 0.96301 0.92683 1.03498 0.87690 1.19647 0.77777 0.87377 0.83026 1.90735 1.51813 1.71687 1.26918 1.48652 1.57069 1.14058 1.14605 1.22287 0.99407 0.98526 0.82718 1.22576 1.00578 0.91745 0.99913 1.23175 1.01814 0.97382 0.91506 0.90597 1.20612 0.95823 0.92834 0.87437 1.43808 1.38475 1.45020 1.04732 1.20758 0.88186 0.91484 0.97813 1.19154 1.17618 0.96411 1.05472 0.91382 1.25139 0.98823 0.95049 1.00440 1.70035 1.48407 1.05883 1.30653 0.86323 0.80346 0.78748 0.81456 1.21403 1.21628 1.20502 1.22415 0.99815 0.80247 0.98922 1.21578 0.96796 0.95536 1.00654 1.20271 0.91188 0.91163 1.04644 0.89481 0.90318 0.88504 0.88354 0.87983 0.91992 0.91574 0.90392 0.89273 0.94303 0.93181 0.96081 0.98767 0.93116 0.93669 0.90623 0.91204 0.88864 0.89840 0.88429 0.87596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.29 36.01 0.37 -0.04 16 2 C 0.18 1.85 8.07 -155.45 -1.25 0.60 16 3 N -0.30 -4.09 12.23 32.70 0.40 -3.69 16 4 N -0.29 -4.00 12.21 32.76 0.40 -3.60 16 5 C 0.18 1.88 7.75 -155.30 -1.20 0.67 16 6 N -0.47 -4.43 3.11 -110.87 -0.35 -4.78 16 7 C 0.12 0.87 6.03 -4.02 -0.02 0.85 16 8 C -0.12 -0.95 2.11 -91.54 -0.19 -1.14 16 9 H 0.10 0.74 7.18 -51.93 -0.37 0.37 16 10 C 0.54 5.91 6.91 -10.99 -0.08 5.84 16 11 O -0.53 -7.72 16.52 5.55 0.09 -7.63 16 12 N -0.61 -6.84 3.33 -170.52 -0.57 -7.40 16 13 C 0.09 0.93 6.12 -3.06 -0.02 0.91 16 14 C -0.11 -1.47 5.08 -24.90 -0.13 -1.59 16 15 C -0.12 -1.69 3.29 -88.47 -0.29 -1.98 16 16 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 17 C 0.16 2.89 5.22 -4.05 -0.02 2.87 16 18 N -0.60 -13.60 2.86 -181.12 -0.52 -14.12 16 19 C 0.16 3.74 8.98 59.85 0.54 4.28 16 20 C -0.26 -6.36 8.99 -15.06 -0.14 -6.50 16 21 H 0.07 1.60 6.57 -52.48 -0.35 1.26 16 22 C 0.00 0.11 5.10 -17.44 -0.09 0.02 16 23 N -0.91 -25.25 10.84 55.49 0.60 -24.64 16 24 Si 0.90 20.52 29.57 -169.99 -5.03 15.49 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 C 0.11 1.37 6.40 -2.53 -0.02 1.35 16 29 C -0.11 -0.80 4.66 -26.42 -0.12 -0.92 16 30 C -0.03 -0.24 6.33 -27.60 -0.17 -0.41 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.35 7.75 -51.93 -0.40 -0.05 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.71 8.12 -51.93 -0.42 0.29 16 35 H 0.10 0.60 7.41 -51.93 -0.38 0.21 16 36 H 0.06 0.50 7.71 -51.93 -0.40 0.10 16 37 H 0.07 0.60 7.91 -51.93 -0.41 0.19 16 38 H 0.08 1.10 7.40 -51.93 -0.38 0.71 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 41 H 0.05 0.90 8.00 -51.93 -0.42 0.48 16 42 H 0.02 0.53 7.69 -51.93 -0.40 0.13 16 43 H -0.01 -0.12 8.09 -51.93 -0.42 -0.54 16 44 H 0.05 1.27 7.04 -51.93 -0.37 0.90 16 45 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.08 1.00 7.99 -51.93 -0.41 0.59 16 47 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 48 H 0.09 0.67 8.11 -51.93 -0.42 0.25 16 49 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 50 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -32.96 401.68 -10.24 -43.19 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -8.49 Total: -3.68 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -2.84 Total: 4.81 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.03 Total: -58.23 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.96 -10.24 -43.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317864508.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.259 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds