Wall clock time and date at job start Wed Apr 1 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30835 * 126.46364 * 2 1 4 4 N 1.28915 * 109.73876 * 179.97438 * 3 2 1 5 5 C 1.29836 * 109.47813 * 359.96865 * 4 3 2 6 6 N 1.34690 * 126.46494 * 180.02562 * 2 1 3 7 7 C 1.46260 * 128.84666 * 0.16940 * 6 2 1 8 8 C 1.53320 * 108.72923 * 162.86538 * 7 6 2 9 9 H 1.09001 * 109.45306 * 290.26580 * 8 7 6 10 10 C 1.50699 * 109.45302 * 170.33370 * 8 7 6 11 11 O 1.21284 * 119.99635 * 274.11137 * 10 8 7 12 12 N 1.34777 * 120.00285 * 94.11350 * 10 8 7 13 13 C 1.47024 * 125.64593 * 4.93929 * 12 10 8 14 14 C 1.54329 * 107.26764 * 181.02500 * 13 12 10 15 15 C 1.55155 * 102.94145 * 22.19280 * 14 13 12 16 16 H 1.08997 * 111.00442 * 82.57256 * 15 14 13 17 17 C 1.53001 * 110.99975 * 206.38374 * 15 14 13 18 18 N 1.46497 * 109.47229 * 293.54583 * 17 15 14 19 19 C 1.46496 * 120.00216 * 269.99745 * 18 17 15 20 20 C 1.36938 * 119.99949 * 90.00364 * 18 17 15 21 21 H 1.08005 * 119.99739 * 22.97005 * 20 18 17 22 22 C 1.38813 * 120.00163 * 202.97172 * 20 18 17 23 23 N 1.31618 * 119.99601 * 13.36180 * 22 20 18 24 24 Si 1.86800 * 120.00061 * 193.36288 * 22 20 18 25 25 H 1.48496 * 109.47147 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46907 * 120.00075 * 24 22 20 27 27 H 1.48504 * 109.46807 * 239.99644 * 24 22 20 28 28 C 1.47422 * 125.64923 * 184.63127 * 12 10 8 29 29 C 1.53137 * 109.58101 * 50.29609 * 8 7 6 30 30 C 1.50802 * 128.52177 * 180.08725 * 5 4 3 31 31 H 1.08994 * 109.46859 * 89.97336 * 1 2 3 32 32 H 1.09001 * 109.46838 * 209.97505 * 1 2 3 33 33 H 1.08997 * 109.46586 * 329.97044 * 1 2 3 34 34 H 1.09008 * 109.59101 * 43.09554 * 7 6 2 35 35 H 1.08997 * 109.59775 * 282.64375 * 7 6 2 36 36 H 1.09006 * 109.88088 * 300.43920 * 13 12 10 37 37 H 1.08998 * 109.88437 * 61.60607 * 13 12 10 38 38 H 1.08999 * 110.71504 * 140.55482 * 14 13 12 39 39 H 1.08998 * 110.71658 * 263.64596 * 14 13 12 40 40 H 1.09004 * 109.47104 * 53.54716 * 17 15 14 41 41 H 1.09004 * 109.46792 * 173.54539 * 17 15 14 42 42 H 1.09002 * 109.47168 * 95.09944 * 19 18 17 43 43 H 1.09003 * 109.47348 * 215.10344 * 19 18 17 44 44 H 1.08998 * 109.47334 * 335.10375 * 19 18 17 45 45 H 0.97003 * 119.99878 * 179.97438 * 23 22 20 46 46 H 1.08997 * 110.36971 * 274.74932 * 28 12 10 47 47 H 1.09002 * 110.36754 * 37.06790 * 28 12 10 48 48 H 1.09010 * 109.49764 * 50.51277 * 29 8 7 49 49 H 1.09001 * 109.50201 * 170.61465 * 29 8 7 50 50 H 1.08998 * 109.73300 * 44.48604 * 30 5 4 51 51 H 1.08998 * 109.73566 * 283.79588 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 0.0005 5 6 3.5816 -0.6156 0.0016 6 7 2.3076 -1.0832 -0.0005 7 6 1.9367 -2.4980 -0.0045 8 6 3.1551 -3.3251 -0.4312 9 1 3.3622 -3.1484 -1.4867 10 6 2.8689 -4.7887 -0.2146 11 8 3.0718 -5.2922 0.8700 12 7 2.3877 -5.5382 -1.2261 13 6 2.1934 -5.0850 -2.6112 14 6 1.6005 -6.2701 -3.4021 15 6 0.9663 -7.1473 -2.2905 16 1 -0.0235 -6.7797 -2.0199 17 6 0.9051 -8.6150 -2.7182 18 7 -0.0279 -8.7586 -3.8385 19 6 -1.4447 -9.0289 -3.5819 20 6 0.4243 -8.6404 -5.1256 21 1 1.4668 -8.8121 -5.3496 22 6 -0.4571 -8.2999 -6.1425 23 7 -1.6536 -7.8368 -5.8485 24 14 0.0548 -8.4988 -7.9279 25 1 1.4387 -9.0337 -7.9894 26 1 -0.8712 -9.4410 -8.6062 27 1 0.0038 -7.1794 -8.6074 28 6 1.9749 -6.9501 -1.1284 29 6 4.3719 -2.9144 0.4030 30 6 4.8052 -1.4971 0.0043 31 1 -0.3633 0.0005 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3632 0.8897 0.5143 34 1 1.1203 -2.6599 -0.7084 35 1 1.6242 -2.7969 0.9960 36 1 1.5020 -4.2425 -2.6320 37 1 3.1504 -4.7926 -3.0433 38 1 0.8396 -5.9246 -4.1019 39 1 2.3855 -6.8150 -3.9264 40 1 1.8970 -8.9452 -3.0268 41 1 0.5638 -9.2235 -1.8808 42 1 -1.9993 -8.0906 -3.5813 43 1 -1.8369 -9.6824 -4.3611 44 1 -1.5520 -9.5149 -2.6121 45 1 -2.2694 -7.5984 -6.5591 46 1 2.8357 -7.6067 -1.2545 47 1 1.4905 -7.1383 -0.1703 48 1 4.1100 -2.9308 1.4610 49 1 5.1906 -3.6103 0.2195 50 1 5.5304 -1.1178 0.7242 51 1 5.2486 -1.5144 -0.9913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317864510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:56 Heat of formation + Delta-G solvation = 45.449467 kcal Electronic energy + Delta-G solvation = -31315.583542 eV Core-core repulsion = 27251.000349 eV Total energy + Delta-G solvation = -4064.583192 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.40939 -41.41397 -39.22507 -37.77017 -37.06151 -35.16124 -33.91732 -32.75269 -32.15936 -31.34576 -30.29837 -28.40595 -27.92812 -27.33535 -25.95066 -24.56453 -23.64098 -23.11369 -22.37881 -21.07515 -20.99077 -19.87670 -18.74302 -18.46862 -17.98954 -17.51546 -17.27690 -16.61561 -16.31870 -16.06572 -15.72187 -15.34720 -15.26282 -15.18402 -14.95940 -14.70755 -14.60847 -14.42626 -13.97425 -13.88002 -13.58529 -13.49675 -13.41565 -13.28910 -13.04696 -12.89766 -12.76944 -12.63383 -12.62517 -12.40723 -12.27218 -12.10220 -12.08271 -11.97411 -11.67438 -11.56698 -11.40175 -11.30085 -11.18499 -11.01480 -10.56612 -10.05622 -9.71293 -8.71922 -7.75711 -5.22427 0.75122 1.16219 1.47683 1.52422 1.54374 1.59343 1.74124 1.88759 2.55424 3.06161 3.15221 3.26787 3.37871 3.42543 3.48586 3.60092 3.78019 3.84395 3.93789 3.99691 4.02200 4.17733 4.20969 4.24460 4.34157 4.46012 4.46566 4.59914 4.62923 4.63570 4.68123 4.79950 4.83869 4.86023 4.88888 4.93716 4.95974 4.96099 5.03990 5.07588 5.15710 5.19743 5.24741 5.38293 5.48436 5.54505 5.72130 5.77740 5.82831 6.39329 6.44332 6.97693 7.22203 7.64068 7.94386 8.38800 9.27338 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.002491 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.512269 B =11239.467910 C =11952.630343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.183 3.817 3 N -0.345 5.345 4 N -0.333 5.333 5 C 0.176 3.824 6 N -0.468 5.468 7 C 0.120 3.880 8 C -0.111 4.111 9 H 0.119 0.881 10 C 0.541 3.459 11 O -0.569 6.569 12 N -0.610 5.610 13 C 0.102 3.898 14 C -0.101 4.101 15 C -0.106 4.106 16 H 0.059 0.941 17 C 0.158 3.842 18 N -0.613 5.613 19 C 0.175 3.825 20 C -0.240 4.240 21 H 0.071 0.929 22 C -0.048 4.048 23 N -0.935 5.935 24 Si 0.953 3.047 25 H -0.267 1.267 26 H -0.300 1.300 27 H -0.295 1.295 28 C 0.118 3.882 29 C -0.101 4.101 30 C -0.027 4.027 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.006 0.994 43 H 0.012 0.988 44 H 0.028 0.972 45 H 0.244 0.756 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.102 0.898 50 H 0.117 0.883 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.676 9.165 11.879 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 N -0.185 5.185 4 N -0.172 5.172 5 C -0.093 4.093 6 N -0.159 5.159 7 C -0.003 4.003 8 C -0.133 4.133 9 H 0.137 0.863 10 C 0.329 3.671 11 O -0.449 6.449 12 N -0.342 5.342 13 C -0.020 4.020 14 C -0.139 4.139 15 C -0.128 4.128 16 H 0.078 0.922 17 C 0.032 3.968 18 N -0.336 5.336 19 C 0.030 3.970 20 C -0.370 4.370 21 H 0.089 0.911 22 C -0.244 4.244 23 N -0.583 5.583 24 Si 0.783 3.217 25 H -0.191 1.191 26 H -0.227 1.227 27 H -0.222 1.222 28 C -0.005 4.005 29 C -0.140 4.140 30 C -0.066 4.066 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.024 0.976 43 H 0.031 0.969 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.120 0.880 50 H 0.135 0.865 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.099 10.409 12.398 18.570 hybrid contribution -0.794 -1.281 -1.314 2.000 sum 8.304 9.128 11.083 16.587 Atomic orbital electron populations 1.20441 0.80995 1.05855 1.05437 1.25364 0.98518 0.82243 1.02436 1.74396 0.96683 1.25442 1.21993 1.73948 1.12789 1.09788 1.20666 1.25328 0.88358 0.92232 1.03356 1.46034 1.06759 1.08597 1.54554 1.21908 0.98063 0.75083 1.05260 1.21583 0.96712 0.90397 1.04560 0.86250 1.20013 0.76483 0.87990 0.82621 1.90723 1.53671 1.74497 1.25959 1.48671 1.62376 1.12940 1.10206 1.22259 1.01666 0.97939 0.80134 1.22298 0.99632 0.95169 0.96802 1.22905 0.97058 0.99004 0.93804 0.92208 1.20909 0.93737 0.92666 0.89490 1.44142 1.04986 1.82357 1.02091 1.20546 0.84486 0.96904 0.95112 1.19389 0.94685 1.38646 0.84291 0.91148 1.25587 0.97269 1.00311 1.01184 1.70211 1.08434 1.48448 1.31169 0.85412 0.77789 0.76654 0.81855 1.19125 1.22741 1.22219 1.22288 0.97616 0.81677 0.98952 1.21547 0.96678 0.95823 0.99917 1.20416 0.90015 0.90108 1.06057 0.88128 0.88446 0.88027 0.86385 0.88137 0.90404 0.89284 0.92282 0.91307 0.92819 0.92576 0.97584 0.96943 0.95323 0.94673 0.90697 0.91012 0.90829 0.87951 0.86466 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.29 71.24 0.73 -0.11 16 2 C 0.18 3.86 8.07 138.14 1.11 4.98 16 3 N -0.35 -9.88 12.23 -50.46 -0.62 -10.49 16 4 N -0.33 -9.48 12.21 -50.28 -0.61 -10.09 16 5 C 0.18 3.71 7.75 138.14 1.07 4.78 16 6 N -0.47 -8.78 3.11 -504.64 -1.57 -10.35 16 7 C 0.12 1.69 6.02 86.53 0.52 2.21 16 8 C -0.11 -1.59 2.23 -11.39 -0.03 -1.61 16 9 H 0.12 1.39 6.98 -2.39 -0.02 1.37 16 10 C 0.54 11.18 6.82 87.66 0.60 11.78 16 11 O -0.57 -15.75 16.72 -3.04 -0.05 -15.80 16 12 N -0.61 -13.03 3.32 -811.34 -2.70 -15.72 16 13 C 0.10 2.03 5.96 86.73 0.52 2.54 16 14 C -0.10 -2.89 5.40 31.78 0.17 -2.72 16 15 C -0.11 -3.10 3.30 -9.33 -0.03 -3.13 16 16 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 17 C 0.16 5.36 5.25 86.38 0.45 5.81 16 18 N -0.61 -27.18 2.87 -726.93 -2.09 -29.26 16 19 C 0.17 7.95 9.02 127.77 1.15 9.11 16 20 C -0.24 -11.68 8.71 84.03 0.73 -10.95 16 21 H 0.07 3.34 7.86 -2.91 -0.02 3.32 16 22 C -0.05 -2.50 5.09 84.86 0.43 -2.07 16 23 N -0.94 -51.49 10.73 21.65 0.23 -51.26 16 24 Si 0.95 42.17 29.57 68.60 2.03 44.20 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 27 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 28 C 0.12 2.85 6.36 86.93 0.55 3.40 16 29 C -0.10 -1.32 4.77 30.80 0.15 -1.17 16 30 C -0.03 -0.34 6.34 30.04 0.19 -0.15 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 0.82 8.04 -2.39 -0.02 0.80 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.10 1.43 8.12 -2.39 -0.02 1.41 16 36 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.09 1.41 7.99 -2.39 -0.02 1.39 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.07 2.05 8.02 -2.39 -0.02 2.03 16 40 H 0.05 1.75 8.00 -2.39 -0.02 1.73 16 41 H 0.06 1.72 7.86 -2.38 -0.02 1.70 16 42 H 0.01 0.29 7.34 -2.39 -0.02 0.28 16 43 H 0.01 0.60 7.35 -2.39 -0.02 0.58 16 44 H 0.03 1.10 7.83 -2.39 -0.02 1.08 16 45 H 0.24 13.28 8.31 -92.71 -0.77 12.51 16 46 H 0.07 1.75 8.04 -2.39 -0.02 1.73 16 47 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 48 H 0.07 1.14 8.11 -2.38 -0.02 1.13 16 49 H 0.10 1.16 8.11 -2.39 -0.02 1.14 16 50 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -70.67 404.65 3.86 -66.80 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.91 Total: 9.28 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 8.33 Total: 22.70 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -7.35 Total: -127.19 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.05 Total: -15.80 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -70.67 3.86 -66.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317864510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.254 kcal (2) G-P(sol) polarization free energy of solvation -70.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds