Wall clock time and date at job start Wed Apr 1 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30842 * 126.46586 * 2 1 4 4 N 1.28901 * 109.74134 * 179.97438 * 3 2 1 5 5 C 1.29838 * 109.48072 * 359.96299 * 4 3 2 6 6 N 1.34698 * 126.46771 * 179.97438 * 2 1 3 7 7 C 1.46258 * 128.84236 * 0.18198 * 6 2 1 8 8 C 1.53322 * 108.72567 * 162.86026 * 7 6 2 9 9 H 1.09003 * 109.43395 * 290.26578 * 8 7 6 10 10 C 1.50705 * 109.45036 * 170.32714 * 8 7 6 11 11 O 1.21274 * 120.00011 * 346.99302 * 10 8 7 12 12 N 1.34781 * 119.99599 * 166.99336 * 10 8 7 13 13 C 1.47022 * 125.64307 * 186.11864 * 12 10 8 14 14 C 1.54330 * 107.26851 * 178.97804 * 13 12 10 15 15 C 1.55155 * 102.93744 * 337.80158 * 14 13 12 16 16 H 1.08999 * 111.01065 * 277.38671 * 15 14 13 17 17 C 1.53003 * 111.00058 * 153.57815 * 15 14 13 18 18 N 1.46503 * 109.46966 * 69.58057 * 17 15 14 19 19 C 1.46501 * 120.00310 * 269.99669 * 18 17 15 20 20 C 1.36937 * 119.99915 * 90.00378 * 18 17 15 21 21 H 1.07998 * 119.99994 * 219.42067 * 20 18 17 22 22 C 1.38812 * 120.00150 * 39.41445 * 20 18 17 23 23 N 1.31616 * 119.99973 * 27.24711 * 22 20 18 24 24 Si 1.86808 * 120.00082 * 207.24916 * 22 20 18 25 25 H 1.48498 * 109.46866 * 59.99847 * 24 22 20 26 26 H 1.48496 * 109.47047 * 300.00201 * 24 22 20 27 27 H 1.48499 * 109.46917 * 179.97438 * 24 22 20 28 28 C 1.47464 * 125.62944 * 6.11738 * 12 10 8 29 29 C 1.53140 * 109.58038 * 50.29416 * 8 7 6 30 30 C 1.50807 * 128.52508 * 180.09200 * 5 4 3 31 31 H 1.09001 * 109.47082 * 89.98433 * 1 2 3 32 32 H 1.09005 * 109.47236 * 209.97941 * 1 2 3 33 33 H 1.08994 * 109.47547 * 329.98203 * 1 2 3 34 34 H 1.09003 * 109.59760 * 43.09023 * 7 6 2 35 35 H 1.08994 * 109.59632 * 282.62950 * 7 6 2 36 36 H 1.08993 * 109.88550 * 59.56006 * 13 12 10 37 37 H 1.09002 * 110.00765 * 298.45975 * 13 12 10 38 38 H 1.08994 * 110.71459 * 219.44378 * 14 13 12 39 39 H 1.08993 * 110.87441 * 96.23739 * 14 13 12 40 40 H 1.08994 * 109.47494 * 309.58454 * 17 15 14 41 41 H 1.08999 * 109.47134 * 189.58076 * 17 15 14 42 42 H 1.09000 * 109.47330 * 264.58981 * 19 18 17 43 43 H 1.09000 * 109.46446 * 24.59260 * 19 18 17 44 44 H 1.09002 * 109.47003 * 144.58373 * 19 18 17 45 45 H 0.96993 * 119.99926 * 5.49314 * 23 22 20 46 46 H 1.09001 * 110.34584 * 85.25498 * 28 12 10 47 47 H 1.08998 * 110.40581 * 322.91555 * 28 12 10 48 48 H 1.08997 * 109.50131 * 50.51398 * 29 8 7 49 49 H 1.09000 * 109.49681 * 170.61406 * 29 8 7 50 50 H 1.08994 * 109.73296 * 44.47470 * 30 5 4 51 51 H 1.09002 * 109.72923 * 283.79764 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6813 0.0005 5 6 3.5815 -0.6156 0.0017 6 7 2.3076 -1.0832 0.0005 7 6 1.9367 -2.4980 -0.0025 8 6 3.1552 -3.3254 -0.4285 9 1 3.3621 -3.1492 -1.4841 10 6 2.8690 -4.7889 -0.2107 11 8 1.9100 -5.1275 0.4498 12 7 3.6790 -5.7214 -0.7501 13 6 3.4494 -7.1734 -0.7254 14 6 4.6194 -7.8351 -1.4838 15 6 5.1469 -6.6844 -2.3809 16 1 4.5542 -6.5956 -3.2914 17 6 6.6278 -6.8816 -2.7113 18 7 6.7786 -8.0254 -3.6142 19 6 6.9741 -9.3701 -3.0667 20 6 6.7370 -7.8375 -4.9700 21 1 6.2311 -8.5548 -5.5992 22 6 7.3451 -6.7252 -5.5355 23 7 8.3695 -6.1583 -4.9344 24 14 6.7093 -6.0328 -7.1499 25 1 5.2910 -5.6232 -6.9883 26 1 6.8072 -7.0714 -8.2067 27 1 7.5237 -4.8531 -7.5374 28 6 4.9420 -5.4538 -1.4626 29 6 4.3719 -2.9140 0.4055 30 6 4.8051 -1.4971 0.0046 31 1 -0.3633 0.0003 -1.0277 32 1 -0.3634 -0.8902 0.5135 33 1 -0.3634 0.8897 0.5141 34 1 1.1204 -2.6605 -0.7063 35 1 1.6242 -2.7961 0.9982 36 1 2.5070 -7.4082 -1.2201 37 1 3.4264 -7.5299 0.3044 38 1 4.2633 -8.6663 -2.0923 39 1 5.3917 -8.1692 -0.7911 40 1 7.1833 -7.0685 -1.7923 41 1 7.0150 -5.9842 -3.1938 42 1 8.0396 -9.5971 -3.0322 43 1 6.5599 -9.4160 -2.0595 44 1 6.4679 -10.0978 -3.7011 45 1 8.7501 -6.5632 -4.1394 46 1 5.7659 -5.3677 -0.7541 47 1 4.8569 -4.5454 -2.0590 48 1 4.1100 -2.9296 1.4634 49 1 5.1905 -3.6100 0.2225 50 1 5.5304 -1.1176 0.7243 51 1 5.2485 -1.5144 -0.9910 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317864511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:00 Heat of formation + Delta-G solvation = 39.111147 kcal Electronic energy + Delta-G solvation = -31561.349147 eV Core-core repulsion = 27496.491105 eV Total energy + Delta-G solvation = -4064.858042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.40895 -41.49970 -39.31327 -37.85382 -37.21836 -35.21031 -33.71918 -32.93098 -32.21743 -31.50074 -30.52789 -28.37380 -27.57717 -27.14226 -26.24703 -24.63227 -23.72278 -22.91323 -22.37278 -21.29876 -21.04187 -20.10070 -19.15446 -18.64286 -17.70231 -17.65843 -17.08052 -16.63713 -16.14036 -16.00002 -15.79340 -15.53291 -15.40882 -15.19151 -15.08612 -14.87806 -14.77510 -14.48397 -14.04525 -13.96610 -13.66189 -13.51705 -13.38695 -13.30312 -13.24763 -12.98586 -12.78074 -12.66795 -12.63375 -12.52481 -12.32496 -12.13902 -12.00683 -11.91718 -11.64822 -11.49906 -11.40712 -11.28848 -11.20278 -10.98527 -10.40172 -10.06038 -9.75943 -8.81378 -8.11734 -5.51104 0.75708 1.26544 1.41888 1.61017 1.64221 1.73997 1.84641 1.88234 2.65606 3.01071 3.09241 3.19917 3.23180 3.46857 3.49070 3.50630 3.70512 3.82717 3.90142 3.96364 4.04563 4.07758 4.19144 4.26292 4.29196 4.38785 4.48401 4.56663 4.60031 4.62011 4.62969 4.71131 4.77332 4.80010 4.81349 4.85261 4.91613 4.95711 4.96799 4.98352 5.01744 5.08155 5.16502 5.19284 5.23051 5.38438 5.50536 5.84061 5.98739 6.36810 6.45136 6.91819 7.17553 7.64207 7.80514 8.25832 8.98007 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.002877 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.577821 B = 9731.183952 C =10991.987152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.181 3.819 3 N -0.346 5.346 4 N -0.335 5.335 5 C 0.175 3.825 6 N -0.470 5.470 7 C 0.126 3.874 8 C -0.115 4.115 9 H 0.116 0.884 10 C 0.544 3.456 11 O -0.572 6.572 12 N -0.608 5.608 13 C 0.113 3.887 14 C -0.109 4.109 15 C -0.107 4.107 16 H 0.058 0.942 17 C 0.159 3.841 18 N -0.615 5.615 19 C 0.123 3.877 20 C -0.362 4.362 21 H 0.033 0.967 22 C -0.055 4.055 23 N -0.922 5.922 24 Si 1.100 2.900 25 H -0.279 1.279 26 H -0.282 1.282 27 H -0.291 1.291 28 C 0.106 3.894 29 C -0.110 4.110 30 C -0.029 4.029 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.046 0.954 42 H -0.008 1.008 43 H 0.064 0.936 44 H 0.027 0.973 45 H 0.257 0.743 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.107 0.893 50 H 0.119 0.881 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.815 4.088 12.642 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 N -0.186 5.186 4 N -0.173 5.173 5 C -0.094 4.094 6 N -0.161 5.161 7 C 0.004 3.996 8 C -0.136 4.136 9 H 0.134 0.866 10 C 0.332 3.668 11 O -0.452 6.452 12 N -0.340 5.340 13 C -0.010 4.010 14 C -0.146 4.146 15 C -0.128 4.128 16 H 0.076 0.924 17 C 0.032 3.968 18 N -0.339 5.339 19 C -0.022 4.022 20 C -0.492 4.492 21 H 0.050 0.950 22 C -0.254 4.254 23 N -0.561 5.561 24 Si 0.925 3.075 25 H -0.205 1.205 26 H -0.208 1.208 27 H -0.217 1.217 28 C -0.016 4.016 29 C -0.149 4.149 30 C -0.068 4.068 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.010 0.990 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.066 0.934 46 H 0.110 0.890 47 H 0.104 0.896 48 H 0.100 0.900 49 H 0.126 0.874 50 H 0.137 0.863 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.764 6.589 11.930 18.672 hybrid contribution -0.293 -2.724 0.689 2.825 sum -13.057 3.865 12.619 18.565 Atomic orbital electron populations 1.20440 0.80759 1.05902 1.05434 1.25423 0.98645 0.82193 1.02452 1.74382 0.96624 1.25526 1.22052 1.73945 1.12891 1.09839 1.20648 1.25282 0.88392 0.92242 1.03510 1.46103 1.06666 1.08907 1.54384 1.21843 0.97762 0.74316 1.05675 1.21548 0.97058 0.90781 1.04243 0.86560 1.19927 0.81366 0.87130 0.78337 1.90703 1.30715 1.82826 1.40967 1.48525 1.23431 1.07093 1.54978 1.21955 0.98765 0.79327 1.00909 1.22567 0.96740 0.97662 0.97678 1.22782 0.99058 0.94203 0.96807 0.92384 1.20733 0.92372 0.91589 0.92070 1.43966 1.84380 1.03267 1.02241 1.21184 0.96575 0.86899 0.97511 1.19890 1.32604 1.12449 0.84287 0.94961 1.26983 0.93706 0.98816 1.05927 1.70907 1.19183 1.44535 1.21457 0.83056 0.75716 0.75849 0.72856 1.20497 1.20776 1.21704 1.22536 0.85340 0.99008 0.94752 1.21715 0.96713 0.96416 1.00027 1.20396 0.90159 0.90291 1.05979 0.88088 0.88337 0.87961 0.86858 0.87559 0.92026 0.90714 0.90817 0.89999 0.93483 0.93591 0.99026 0.91729 0.95422 0.93366 0.89016 0.89588 0.90042 0.87432 0.86290 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.29 71.23 0.73 -0.07 16 2 C 0.18 4.00 8.07 138.14 1.11 5.11 16 3 N -0.35 -10.33 12.23 -50.46 -0.62 -10.95 16 4 N -0.33 -10.20 12.21 -50.28 -0.61 -10.82 16 5 C 0.17 4.05 7.75 138.14 1.07 5.12 16 6 N -0.47 -9.54 3.11 -504.65 -1.57 -11.11 16 7 C 0.13 2.01 5.60 86.53 0.48 2.49 16 8 C -0.11 -1.85 1.86 -11.38 -0.02 -1.87 16 9 H 0.12 1.81 7.35 -2.39 -0.02 1.79 16 10 C 0.54 11.60 7.07 87.66 0.62 12.22 16 11 O -0.57 -15.42 16.12 -3.01 -0.05 -15.47 16 12 N -0.61 -13.19 3.33 -811.68 -2.70 -15.89 16 13 C 0.11 2.51 6.87 86.73 0.60 3.10 16 14 C -0.11 -2.64 5.06 31.78 0.16 -2.48 16 15 C -0.11 -3.16 3.27 -9.40 -0.03 -3.19 16 16 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 17 C 0.16 5.97 4.38 86.38 0.38 6.35 16 18 N -0.61 -27.32 2.51 -726.93 -1.82 -29.15 16 19 C 0.12 4.65 10.38 127.77 1.33 5.98 16 20 C -0.36 -18.75 9.37 84.03 0.79 -17.97 16 21 H 0.03 1.75 7.96 -2.91 -0.02 1.73 16 22 C -0.05 -2.87 4.77 84.86 0.40 -2.46 16 23 N -0.92 -51.39 12.33 21.65 0.27 -51.12 16 24 Si 1.10 47.64 30.00 68.60 2.06 49.70 16 25 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 26 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 28 C 0.11 2.32 5.05 86.85 0.44 2.76 16 29 C -0.11 -1.50 5.16 30.81 0.16 -1.34 16 30 C -0.03 -0.45 6.34 30.05 0.19 -0.26 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 0.79 8.04 -2.38 -0.02 0.77 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 1.71 7.61 -2.39 -0.02 1.69 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 1.84 7.33 -2.39 -0.02 1.82 16 40 H 0.05 1.59 7.97 -2.39 -0.02 1.58 16 41 H 0.05 2.04 5.79 -2.39 -0.01 2.03 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.06 1.96 6.34 -2.39 -0.02 1.94 16 44 H 0.03 1.04 8.08 -2.39 -0.02 1.02 16 45 H 0.26 14.55 7.47 -92.71 -0.69 13.85 16 46 H 0.09 1.71 7.37 -2.39 -0.02 1.70 16 47 H 0.09 1.75 7.10 -2.39 -0.02 1.74 16 48 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 49 H 0.11 1.26 6.16 -2.39 -0.01 1.24 16 50 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -72.29 398.54 4.37 -67.92 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.00 Total: 13.38 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 8.41 Total: 13.50 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -7.06 Total: -129.03 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.05 Total: -15.47 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.06 Total: 49.70 kcal Total: -72.29 4.37 -67.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317864511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.032 kcal (2) G-P(sol) polarization free energy of solvation -72.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds