Wall clock time and date at job start Wed Apr 1 2020 05:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39760 * 126.08863 * 2 1 4 4 N 1.30854 * 108.31535 * 179.73765 * 3 2 1 5 5 N 1.40058 * 108.37245 * 0.44433 * 4 3 2 6 6 C 1.46507 * 126.04272 * 179.81615 * 5 4 3 7 7 C 1.52997 * 109.47044 * 265.93469 * 6 5 4 8 8 C 1.53003 * 117.49756 * 245.51814 * 7 6 5 9 9 C 1.53002 * 117.49820 * 176.85963 * 7 6 5 10 10 C 1.35241 * 107.91295 * 359.54793 * 5 4 3 11 11 N 1.39507 * 126.21769 * 180.28000 * 10 5 4 12 12 C 1.34772 * 120.00071 * 147.89834 * 11 10 5 13 13 O 1.21586 * 119.99761 * 353.13906 * 12 11 10 14 14 N 1.34773 * 120.00305 * 173.14114 * 12 11 10 15 15 C 1.46496 * 120.00379 * 184.53246 * 14 12 11 16 16 C 1.53038 * 109.46198 * 274.56456 * 15 14 12 17 17 C 1.53193 * 109.31781 * 178.60008 * 16 15 14 18 18 N 1.46929 * 108.76218 * 54.65026 * 17 16 15 19 19 C 1.36937 * 120.62687 * 126.36532 * 18 17 16 20 20 H 1.08007 * 120.00186 * 327.86812 * 19 18 17 21 21 C 1.38813 * 120.00185 * 147.87061 * 19 18 17 22 22 N 1.31619 * 119.99544 * 348.94225 * 21 19 18 23 23 Si 1.86795 * 120.00431 * 168.94085 * 21 19 18 24 24 H 1.48508 * 109.47017 * 59.99882 * 23 21 19 25 25 H 1.48500 * 109.47472 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47016 * 300.00229 * 23 21 19 27 27 C 1.46924 * 118.73916 * 306.38869 * 18 17 16 28 28 C 1.53040 * 109.45932 * 154.50862 * 15 14 12 29 29 H 1.09001 * 109.47271 * 276.57941 * 1 2 3 30 30 H 1.09000 * 109.46657 * 36.57624 * 1 2 3 31 31 H 1.09001 * 109.47635 * 156.57301 * 1 2 3 32 32 H 1.07995 * 125.84274 * 0.05901 * 3 2 1 33 33 H 1.09006 * 109.47041 * 25.93378 * 6 5 4 34 34 H 1.09001 * 109.47308 * 145.92895 * 6 5 4 35 35 H 1.08998 * 115.55195 * 31.18933 * 7 6 5 36 36 H 1.09005 * 117.49586 * 0.02562 * 8 7 6 37 37 H 1.08998 * 117.49917 * 145.02102 * 8 7 6 38 38 H 1.08995 * 117.49882 * 214.97875 * 9 7 6 39 39 H 1.09002 * 117.50027 * 359.97438 * 9 7 6 40 40 H 0.97003 * 119.99931 * 327.90310 * 11 10 5 41 41 H 0.97007 * 119.99803 * 4.53060 * 14 12 11 42 42 H 1.08997 * 109.46198 * 34.53673 * 15 14 12 43 43 H 1.09008 * 109.49461 * 298.56300 * 16 15 14 44 44 H 1.09002 * 109.49947 * 58.65476 * 16 15 14 45 45 H 1.08997 * 109.59452 * 294.87143 * 17 16 15 46 46 H 1.08991 * 109.70387 * 174.50490 * 17 16 15 47 47 H 0.97008 * 120.00024 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.58734 * 293.81932 * 27 18 17 49 49 H 1.09004 * 109.69869 * 173.46654 * 27 18 17 50 50 H 1.08999 * 109.49934 * 301.32957 * 28 15 14 51 51 H 1.08995 * 109.50078 * 61.40869 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3303 1.1294 0.0000 4 7 3.5763 0.7300 0.0057 5 7 3.5910 -0.6705 -0.0008 6 6 4.7846 -1.5201 -0.0013 7 6 5.1449 -1.8924 -1.4409 8 6 5.0358 -3.3660 -1.8379 9 6 6.4125 -2.7208 -1.6602 10 6 2.3086 -1.0999 -0.0004 11 7 1.8844 -2.4290 -0.0003 12 6 0.7377 -2.7702 0.6203 13 8 0.1378 -1.9473 1.2846 14 7 0.2561 -4.0236 0.5046 15 6 -1.0393 -4.3681 1.0958 16 6 -0.8446 -4.7458 2.5660 17 6 -2.2052 -5.0715 3.1900 18 7 -2.8594 -6.1098 2.3819 19 6 -3.3141 -7.2631 2.9634 20 1 -2.7980 -7.6774 3.8170 21 6 -4.4382 -7.9000 2.4559 22 7 -5.1922 -7.2926 1.5643 23 14 -4.8809 -9.6187 3.0382 24 1 -5.1106 -9.6005 4.5053 25 1 -6.1163 -10.0718 2.3498 26 1 -3.7680 -10.5501 2.7230 27 6 -3.0159 -5.8872 0.9381 28 6 -1.6461 -5.5521 0.3395 29 1 -0.3634 0.1177 1.0209 30 1 -0.3633 0.8253 -0.6124 31 1 -0.3634 -0.9429 -0.4086 32 1 1.9953 2.1561 0.0009 33 1 5.6153 -0.9799 0.4530 34 1 4.5854 -2.4270 0.5696 35 1 4.8934 -1.1478 -2.1961 36 1 4.7068 -4.0701 -1.0735 37 1 4.7128 -3.5908 -2.8543 38 1 6.9946 -2.5214 -2.5599 39 1 6.9899 -3.0001 -0.7789 40 1 2.4147 -3.1074 -0.4468 41 1 0.7672 -4.6978 0.0299 42 1 -1.7094 -3.5112 1.0267 43 1 -0.1946 -5.6182 2.6344 44 1 -0.3906 -3.9105 3.0992 45 1 -2.8250 -4.1750 3.2040 46 1 -2.0651 -5.4349 4.2079 47 1 -5.9781 -7.7375 1.2098 48 1 -3.7018 -5.0571 0.7686 49 1 -3.4096 -6.7884 0.4679 50 1 -1.7630 -5.2907 -0.7123 51 1 -0.9883 -6.4166 0.4287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339576418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:09 Heat of formation + Delta-G solvation = 106.388693 kcal Electronic energy + Delta-G solvation = -31126.587509 eV Core-core repulsion = 27064.646840 eV Total energy + Delta-G solvation = -4061.940669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.74316 -39.94652 -38.04718 -37.56921 -34.89258 -34.55144 -33.29621 -32.20910 -30.72384 -30.03512 -29.31521 -27.88860 -25.49623 -24.98836 -23.00161 -22.71690 -22.19601 -21.95936 -21.25274 -20.72465 -19.87269 -19.28459 -18.50283 -17.76750 -16.70373 -16.22186 -15.99245 -15.38460 -15.23380 -14.95234 -14.77798 -14.52249 -14.10848 -13.86924 -13.70529 -13.56395 -13.39138 -13.04014 -12.79614 -12.61589 -12.46464 -12.39685 -12.07759 -11.96263 -11.93064 -11.49039 -11.11070 -11.08395 -10.96761 -10.85066 -10.75882 -10.62957 -10.56606 -10.36664 -10.31307 -10.08828 -10.03071 -9.77122 -9.57391 -9.05926 -8.75075 -8.49486 -7.96512 -6.64124 -5.81573 -3.29421 1.65961 1.90468 2.67439 2.74126 3.20688 3.27065 3.36161 3.41751 3.42440 4.05202 4.09845 4.19331 4.38596 4.46268 4.46676 4.73224 4.96252 5.03944 5.09597 5.27732 5.28207 5.33811 5.35306 5.41560 5.47567 5.55272 5.56818 5.59796 5.76105 5.78455 5.83967 6.04774 6.10973 6.21933 6.27434 6.29023 6.42140 6.44385 6.54371 6.56257 6.69893 6.77678 6.80345 6.88414 6.97025 7.01371 7.29751 7.58479 7.62214 7.76711 7.90237 8.45551 8.51924 9.19858 9.80896 10.39863 11.27183 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.002275 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.901971 B =12305.784483 C =13287.386682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.229 4.229 3 C 0.063 3.937 4 N -0.293 5.293 5 N -0.384 5.384 6 C 0.164 3.836 7 C -0.178 4.178 8 C -0.182 4.182 9 C -0.165 4.165 10 C 0.329 3.671 11 N -0.669 5.669 12 C 0.702 3.298 13 O -0.550 6.550 14 N -0.732 5.732 15 C 0.170 3.830 16 C -0.140 4.140 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.063 0.937 21 C 0.005 3.995 22 N -0.905 5.905 23 Si 0.905 3.095 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.176 3.824 28 C -0.147 4.147 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.184 0.816 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.403 0.597 41 H 0.392 0.608 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.021 0.979 46 H 0.056 0.944 47 H 0.255 0.745 48 H 0.022 0.978 49 H 0.091 0.909 50 H 0.054 0.946 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.747 10.303 -8.401 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.243 4.243 3 C -0.123 4.123 4 N -0.114 5.114 5 N -0.171 5.171 6 C 0.042 3.958 7 C -0.198 4.198 8 C -0.219 4.219 9 C -0.203 4.203 10 C 0.109 3.891 11 N -0.321 5.321 12 C 0.402 3.598 13 O -0.423 6.423 14 N -0.385 5.385 15 C 0.067 3.933 16 C -0.180 4.180 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.384 4.384 20 H 0.081 0.919 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.734 3.266 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.050 3.950 28 C -0.187 4.187 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.201 0.799 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.238 0.762 41 H 0.225 0.775 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.040 0.960 49 H 0.109 0.891 50 H 0.073 0.927 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.248 11.216 -7.832 25.271 hybrid contribution -0.357 -1.917 -0.258 1.967 sum 20.891 9.299 -8.089 24.256 Atomic orbital electron populations 1.20086 0.88275 1.00395 1.01877 1.19686 0.97365 0.89945 1.17348 1.23588 0.89738 0.99684 0.99327 1.77413 1.20822 0.86555 1.26638 1.48470 1.03288 1.04886 1.60442 1.21174 0.85995 0.93330 0.95264 1.22773 1.03895 0.95308 0.97796 1.23169 1.00828 0.94579 1.03344 1.22958 0.90541 1.02962 1.03805 1.17223 0.84938 0.84747 1.02183 1.41929 1.25515 1.06258 1.58447 1.15824 0.80006 0.83546 0.80467 1.91043 1.59231 1.49196 1.42863 1.45574 1.23730 1.09118 1.60107 1.20996 0.81111 0.98270 0.92906 1.22402 1.00264 1.00100 0.95269 1.20884 0.90507 0.92017 0.94520 1.44036 1.68236 1.16848 1.02391 1.19119 1.06046 0.99450 1.13808 0.91903 1.25187 0.95364 0.99224 0.99583 1.69959 1.15907 1.36628 1.32370 0.86344 0.77472 0.84330 0.78406 1.20827 1.21594 1.21018 1.20729 0.89304 1.00890 0.84091 1.22581 1.01674 0.96136 0.98319 0.90927 0.93858 0.92591 0.79880 0.87896 0.89453 0.86908 0.88461 0.88234 0.88220 0.88278 0.76176 0.77529 0.89800 0.92511 0.92558 0.96089 0.92590 0.93481 0.95989 0.89111 0.92714 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.67 8.28 36.01 0.30 -0.37 16 2 C -0.23 -3.09 5.78 -104.82 -0.61 -3.70 16 3 C 0.06 0.75 11.95 -17.40 -0.21 0.54 16 4 N -0.29 -3.71 12.56 30.60 0.38 -3.33 16 5 N -0.38 -4.35 3.62 -60.38 -0.22 -4.57 16 6 C 0.16 1.28 6.62 -4.04 -0.03 1.25 16 7 C -0.18 -1.17 6.01 -90.62 -0.54 -1.71 16 8 C -0.18 -0.94 10.18 -26.69 -0.27 -1.21 16 9 C -0.17 -0.81 10.25 -26.69 -0.27 -1.08 16 10 C 0.33 4.15 7.33 -153.14 -1.12 3.02 16 11 N -0.67 -7.39 5.33 -15.85 -0.08 -7.47 16 12 C 0.70 9.74 7.41 -86.93 -0.64 9.10 16 13 O -0.55 -9.53 11.47 5.29 0.06 -9.47 16 14 N -0.73 -9.37 5.08 -58.64 -0.30 -9.67 16 15 C 0.17 2.78 2.39 -67.89 -0.16 2.62 16 16 C -0.14 -2.46 5.66 -26.61 -0.15 -2.62 16 17 C 0.15 3.11 6.52 -3.71 -0.02 3.08 16 18 N -0.59 -14.44 2.98 -172.32 -0.51 -14.95 16 19 C -0.25 -6.82 9.57 -15.06 -0.14 -6.97 16 20 H 0.06 1.66 7.85 -52.48 -0.41 1.25 16 21 C 0.01 0.14 5.03 -17.43 -0.09 0.05 16 22 N -0.90 -25.65 11.13 55.49 0.62 -25.03 16 23 Si 0.90 21.24 29.57 -169.99 -5.03 16.21 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.18 4.00 5.25 -3.71 -0.02 3.98 16 28 C -0.15 -2.54 5.55 -26.61 -0.15 -2.68 16 29 H 0.07 1.11 7.24 -51.93 -0.38 0.74 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.84 6.11 -51.93 -0.32 0.53 16 32 H 0.18 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.58 7.88 -51.93 -0.41 0.17 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 0.42 8.04 -51.93 -0.42 0.00 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.40 3.18 8.82 -40.82 -0.36 2.82 16 41 H 0.39 3.86 8.63 -40.82 -0.35 3.51 16 42 H 0.08 1.54 7.63 -51.93 -0.40 1.15 16 43 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 47 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.09 2.30 6.19 -51.93 -0.32 1.98 16 50 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 407.24 15.07 6.14 6.14 Total: -1.00 -32.12 407.24 -11.48 -43.60 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.40 Total: 5.22 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -4.14 Total: 3.32 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: -0.11 Total: -65.01 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.06 Total: -9.47 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.12 -11.48 -43.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339576418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.991 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds