Wall clock time and date at job start Wed Apr 1 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39760 * 126.08863 * 2 1 4 4 N 1.30854 * 108.31535 * 179.73765 * 3 2 1 5 5 N 1.40058 * 108.37245 * 0.44433 * 4 3 2 6 6 C 1.46507 * 126.04272 * 179.81615 * 5 4 3 7 7 C 1.52997 * 109.47044 * 265.93469 * 6 5 4 8 8 C 1.53003 * 117.49756 * 245.51814 * 7 6 5 9 9 C 1.53002 * 117.49820 * 176.85963 * 7 6 5 10 10 C 1.35241 * 107.91295 * 359.54793 * 5 4 3 11 11 N 1.39507 * 126.21769 * 180.28000 * 10 5 4 12 12 C 1.34772 * 120.00071 * 147.89834 * 11 10 5 13 13 O 1.21586 * 119.99761 * 353.13906 * 12 11 10 14 14 N 1.34773 * 120.00305 * 173.14114 * 12 11 10 15 15 C 1.46496 * 120.00379 * 184.53246 * 14 12 11 16 16 C 1.53038 * 109.46198 * 274.56456 * 15 14 12 17 17 C 1.53193 * 109.31781 * 178.60008 * 16 15 14 18 18 N 1.46929 * 108.76218 * 54.65026 * 17 16 15 19 19 C 1.36937 * 120.62687 * 126.36532 * 18 17 16 20 20 H 1.08007 * 120.00186 * 327.86812 * 19 18 17 21 21 C 1.38813 * 120.00185 * 147.87061 * 19 18 17 22 22 N 1.31619 * 119.99544 * 348.94225 * 21 19 18 23 23 Si 1.86795 * 120.00431 * 168.94085 * 21 19 18 24 24 H 1.48508 * 109.47017 * 59.99882 * 23 21 19 25 25 H 1.48500 * 109.47472 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47016 * 300.00229 * 23 21 19 27 27 C 1.46924 * 118.73916 * 306.38869 * 18 17 16 28 28 C 1.53040 * 109.45932 * 154.50862 * 15 14 12 29 29 H 1.09001 * 109.47271 * 276.57941 * 1 2 3 30 30 H 1.09000 * 109.46657 * 36.57624 * 1 2 3 31 31 H 1.09001 * 109.47635 * 156.57301 * 1 2 3 32 32 H 1.07995 * 125.84274 * 0.05901 * 3 2 1 33 33 H 1.09006 * 109.47041 * 25.93378 * 6 5 4 34 34 H 1.09001 * 109.47308 * 145.92895 * 6 5 4 35 35 H 1.08998 * 115.55195 * 31.18933 * 7 6 5 36 36 H 1.09005 * 117.49586 * 0.02562 * 8 7 6 37 37 H 1.08998 * 117.49917 * 145.02102 * 8 7 6 38 38 H 1.08995 * 117.49882 * 214.97875 * 9 7 6 39 39 H 1.09002 * 117.50027 * 359.97438 * 9 7 6 40 40 H 0.97003 * 119.99931 * 327.90310 * 11 10 5 41 41 H 0.97007 * 119.99803 * 4.53060 * 14 12 11 42 42 H 1.08997 * 109.46198 * 34.53673 * 15 14 12 43 43 H 1.09008 * 109.49461 * 298.56300 * 16 15 14 44 44 H 1.09002 * 109.49947 * 58.65476 * 16 15 14 45 45 H 1.08997 * 109.59452 * 294.87143 * 17 16 15 46 46 H 1.08991 * 109.70387 * 174.50490 * 17 16 15 47 47 H 0.97008 * 120.00024 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.58734 * 293.81932 * 27 18 17 49 49 H 1.09004 * 109.69869 * 173.46654 * 27 18 17 50 50 H 1.08999 * 109.49934 * 301.32957 * 28 15 14 51 51 H 1.08995 * 109.50078 * 61.40869 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3303 1.1294 0.0000 4 7 3.5763 0.7300 0.0057 5 7 3.5910 -0.6705 -0.0008 6 6 4.7846 -1.5201 -0.0013 7 6 5.1449 -1.8924 -1.4409 8 6 5.0358 -3.3660 -1.8379 9 6 6.4125 -2.7208 -1.6602 10 6 2.3086 -1.0999 -0.0004 11 7 1.8844 -2.4290 -0.0003 12 6 0.7377 -2.7702 0.6203 13 8 0.1378 -1.9473 1.2846 14 7 0.2561 -4.0236 0.5046 15 6 -1.0393 -4.3681 1.0958 16 6 -0.8446 -4.7458 2.5660 17 6 -2.2052 -5.0715 3.1900 18 7 -2.8594 -6.1098 2.3819 19 6 -3.3141 -7.2631 2.9634 20 1 -2.7980 -7.6774 3.8170 21 6 -4.4382 -7.9000 2.4559 22 7 -5.1922 -7.2926 1.5643 23 14 -4.8809 -9.6187 3.0382 24 1 -5.1106 -9.6005 4.5053 25 1 -6.1163 -10.0718 2.3498 26 1 -3.7680 -10.5501 2.7230 27 6 -3.0159 -5.8872 0.9381 28 6 -1.6461 -5.5521 0.3395 29 1 -0.3634 0.1177 1.0209 30 1 -0.3633 0.8253 -0.6124 31 1 -0.3634 -0.9429 -0.4086 32 1 1.9953 2.1561 0.0009 33 1 5.6153 -0.9799 0.4530 34 1 4.5854 -2.4270 0.5696 35 1 4.8934 -1.1478 -2.1961 36 1 4.7068 -4.0701 -1.0735 37 1 4.7128 -3.5908 -2.8543 38 1 6.9946 -2.5214 -2.5599 39 1 6.9899 -3.0001 -0.7789 40 1 2.4147 -3.1074 -0.4468 41 1 0.7672 -4.6978 0.0299 42 1 -1.7094 -3.5112 1.0267 43 1 -0.1946 -5.6182 2.6344 44 1 -0.3906 -3.9105 3.0992 45 1 -2.8250 -4.1750 3.2040 46 1 -2.0651 -5.4349 4.2079 47 1 -5.9781 -7.7375 1.2098 48 1 -3.7018 -5.0571 0.7686 49 1 -3.4096 -6.7884 0.4679 50 1 -1.7630 -5.2907 -0.7123 51 1 -0.9883 -6.4166 0.4287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339576418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:08 Heat of formation + Delta-G solvation = 87.409757 kcal Electronic energy + Delta-G solvation = -31127.410498 eV Core-core repulsion = 27064.646840 eV Total energy + Delta-G solvation = -4062.763657 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.68359 -41.07366 -39.11598 -38.51883 -36.17810 -35.84488 -34.14305 -33.91578 -32.01969 -31.52131 -30.84451 -28.74305 -26.91490 -26.29048 -24.21673 -23.79485 -23.38681 -22.68686 -22.52512 -21.44634 -21.19369 -20.53780 -19.57549 -18.91301 -18.38382 -17.25075 -16.91654 -16.69129 -16.25256 -16.19321 -15.80423 -15.61912 -15.36897 -15.29456 -14.90447 -14.75717 -14.63851 -14.32013 -14.08390 -14.06263 -13.54777 -13.41766 -13.19739 -13.00257 -12.91566 -12.64668 -12.59815 -12.53021 -12.40388 -12.20820 -12.03701 -11.95098 -11.83839 -11.59268 -11.50361 -11.44022 -11.30749 -11.09590 -11.01688 -10.54222 -10.03307 -9.88462 -8.95588 -8.62027 -7.85874 -5.37073 0.69966 0.98817 1.50048 1.51003 1.58193 1.73356 1.81765 2.18247 2.52657 2.77620 3.06562 3.31934 3.51902 3.64109 3.69938 3.91284 3.92058 3.97550 4.08045 4.10805 4.26781 4.34086 4.37310 4.49501 4.49875 4.56237 4.68387 4.75633 4.78501 4.82678 4.87890 4.89089 4.98100 5.02986 5.03708 5.10530 5.13878 5.19181 5.21440 5.26940 5.33175 5.37898 5.50131 5.56199 5.66653 5.71263 5.77402 5.83380 6.06011 6.43453 6.67292 6.94252 7.17945 7.44742 7.85762 8.39893 9.20592 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.002275 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.901971 B =12305.784483 C =13287.386682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.257 4.257 3 C 0.061 3.939 4 N -0.310 5.310 5 N -0.378 5.378 6 C 0.158 3.842 7 C -0.188 4.188 8 C -0.178 4.178 9 C -0.156 4.156 10 C 0.322 3.678 11 N -0.651 5.651 12 C 0.704 3.296 13 O -0.585 6.585 14 N -0.716 5.716 15 C 0.185 3.815 16 C -0.124 4.124 17 C 0.145 3.855 18 N -0.609 5.609 19 C -0.265 4.265 20 H 0.065 0.935 21 C -0.046 4.046 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.180 3.820 28 C -0.128 4.128 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.209 0.791 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.420 0.580 41 H 0.411 0.589 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.007 0.993 46 H 0.055 0.945 47 H 0.251 0.749 48 H -0.005 1.005 49 H 0.061 0.939 50 H 0.078 0.922 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.310 9.418 -8.896 26.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.271 4.271 3 C -0.124 4.124 4 N -0.132 5.132 5 N -0.166 5.166 6 C 0.038 3.962 7 C -0.208 4.208 8 C -0.214 4.214 9 C -0.193 4.193 10 C 0.101 3.899 11 N -0.304 5.304 12 C 0.404 3.596 13 O -0.461 6.461 14 N -0.371 5.371 15 C 0.080 3.920 16 C -0.164 4.164 17 C 0.019 3.981 18 N -0.333 5.333 19 C -0.395 4.395 20 H 0.083 0.917 21 C -0.242 4.242 22 N -0.581 5.581 23 Si 0.797 3.203 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.200 1.200 27 C 0.054 3.946 28 C -0.168 4.168 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.225 0.775 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.259 0.741 41 H 0.248 0.752 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.025 0.975 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.013 0.987 49 H 0.080 0.920 50 H 0.096 0.904 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.901 10.318 -8.356 27.341 hybrid contribution -1.117 -1.572 -0.089 1.930 sum 22.784 8.746 -8.445 25.824 Atomic orbital electron populations 1.19898 0.88846 1.00093 1.00631 1.19875 0.97350 0.91090 1.18769 1.23983 0.89250 1.00625 0.98562 1.77373 1.21212 0.87457 1.27142 1.48715 1.03705 1.04709 1.59424 1.21474 0.84911 0.93425 0.96422 1.22567 1.05932 0.95830 0.96443 1.23280 1.00832 0.93497 1.03829 1.23056 0.90308 1.01525 1.04446 1.17318 0.85554 0.85008 1.02062 1.41570 1.24759 1.06271 1.57832 1.15842 0.80346 0.83235 0.80213 1.91045 1.60386 1.50216 1.44428 1.45084 1.22627 1.09451 1.59946 1.20544 0.82266 0.96942 0.92231 1.22183 0.97919 1.00458 0.95827 1.20961 0.91924 0.90627 0.94609 1.44289 1.68537 1.17061 1.03366 1.19447 1.06033 1.00268 1.13774 0.91744 1.25929 0.95456 1.02777 1.00054 1.70129 1.16281 1.38006 1.33688 0.85326 0.77010 0.80139 0.77820 1.20423 1.22079 1.19999 1.20544 0.91914 0.98487 0.83638 1.22277 0.98434 0.96885 0.99187 0.93133 0.92178 0.94286 0.77452 0.87446 0.87948 0.88824 0.87142 0.88096 0.87835 0.87102 0.74115 0.75222 0.91999 0.91575 0.92247 0.97481 0.92671 0.93996 0.98672 0.92014 0.90359 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.01 8.28 71.24 0.59 -0.42 16 2 C -0.26 -6.75 5.78 -19.99 -0.12 -6.87 16 3 C 0.06 1.41 11.95 85.21 1.02 2.43 16 4 N -0.31 -7.53 12.56 -57.09 -0.72 -8.24 16 5 N -0.38 -8.02 3.62 -344.96 -1.25 -9.27 16 6 C 0.16 2.13 6.62 86.38 0.57 2.71 16 7 C -0.19 -2.10 6.01 -10.79 -0.06 -2.17 16 8 C -0.18 -1.32 10.18 30.62 0.31 -1.01 16 9 C -0.16 -1.12 10.25 30.62 0.31 -0.81 16 10 C 0.32 7.68 7.33 131.31 0.96 8.64 16 11 N -0.65 -13.02 5.33 -322.32 -1.72 -14.74 16 12 C 0.70 18.39 7.41 179.06 1.33 19.72 16 13 O -0.58 -20.04 11.47 -3.99 -0.05 -20.09 16 14 N -0.72 -16.60 5.08 -457.71 -2.32 -18.93 16 15 C 0.19 5.80 2.39 45.02 0.11 5.90 16 16 C -0.12 -4.20 5.66 30.67 0.17 -4.02 16 17 C 0.14 6.14 6.52 86.36 0.56 6.70 16 18 N -0.61 -29.99 2.98 -699.09 -2.08 -32.07 16 19 C -0.26 -14.28 9.57 84.03 0.80 -13.48 16 20 H 0.06 3.39 7.85 -2.91 -0.02 3.36 16 21 C -0.05 -2.54 5.03 84.86 0.43 -2.12 16 22 N -0.94 -54.30 11.13 21.65 0.24 -54.06 16 23 Si 0.97 43.83 29.57 68.60 2.03 45.86 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 C 0.18 8.31 5.25 86.36 0.45 8.77 16 28 C -0.13 -4.23 5.55 30.67 0.17 -4.06 16 29 H 0.05 1.59 7.24 -2.39 -0.02 1.58 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.17 6.11 -2.39 -0.01 1.16 16 32 H 0.21 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.10 1.06 7.88 -2.39 -0.02 1.04 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.11 0.54 8.04 -2.38 -0.02 0.52 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.42 5.35 8.82 -92.71 -0.82 4.54 16 41 H 0.41 6.59 8.63 -92.70 -0.80 5.79 16 42 H 0.06 2.27 7.63 -2.39 -0.02 2.25 16 43 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.05 2.29 7.93 -2.39 -0.02 2.28 16 47 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 48 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 49 H 0.06 3.20 6.19 -2.38 -0.01 3.19 16 50 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -71.16 407.24 1.08 -70.08 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -0.67 Total: 21.56 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 7.61 Total: 19.90 kcal Atomic # 7 Polarization: -129.46 SS G_CDS: -7.85 Total: -137.31 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -71.16 1.08 -70.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339576418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.490 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds