Wall clock time and date at job start Wed Apr 1 2020 04:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00071 * 2 1 4 4 N 1.46498 * 109.46973 * 124.99834 * 3 2 1 5 5 C 1.36740 * 127.14079 * 270.15121 * 4 3 2 6 6 C 1.50700 * 126.34403 * 359.96842 * 5 4 3 7 7 C 1.52996 * 109.47137 * 270.28300 * 6 5 4 8 8 C 1.50697 * 109.47271 * 180.02562 * 7 6 5 9 9 H 1.07995 * 119.99869 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99759 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00454 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99749 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47215 * 90.00017 * 12 10 8 14 14 H 1.48495 * 109.47335 * 209.99863 * 12 10 8 15 15 H 1.48502 * 109.47307 * 330.00001 * 12 10 8 16 16 N 1.30297 * 107.30743 * 180.22715 * 5 4 3 17 17 N 1.28533 * 110.05003 * 359.77384 * 16 5 4 18 18 C 1.31213 * 109.86207 * 359.97438 * 17 16 5 19 19 N 1.38580 * 126.47306 * 179.97438 * 18 17 16 20 20 C 1.48526 * 111.00313 * 117.42429 * 19 18 17 21 21 C 1.54938 * 103.22940 * 200.27978 * 20 19 18 22 22 C 1.54604 * 102.92068 * 37.41084 * 21 20 19 23 23 C 1.52997 * 110.30887 * 219.12563 * 22 21 20 24 24 C 1.50704 * 110.39153 * 97.00002 * 22 21 20 25 25 O 1.21273 * 120.00322 * 242.84528 * 24 22 21 26 26 N 1.34778 * 119.99644 * 62.84860 * 24 22 21 27 27 C 1.46504 * 119.99989 * 179.97438 * 26 24 22 28 28 C 1.47905 * 110.99770 * 0.02562 * 19 18 17 29 29 H 1.07990 * 119.99891 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.99560 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99746 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47097 * 5.00406 * 3 2 1 33 33 H 1.08997 * 109.47302 * 244.99673 * 3 2 1 34 34 H 1.09001 * 109.47256 * 30.28551 * 6 5 4 35 35 H 1.09002 * 109.46674 * 150.28300 * 6 5 4 36 36 H 1.09001 * 109.47252 * 300.00253 * 7 6 5 37 37 H 1.08998 * 109.46850 * 59.99623 * 7 6 5 38 38 H 0.96999 * 120.00028 * 179.97438 * 11 10 8 39 39 H 1.09007 * 110.66648 * 318.71132 * 20 19 18 40 40 H 1.08996 * 110.67245 * 81.84054 * 20 19 18 41 41 H 1.08996 * 110.72459 * 279.05350 * 21 20 19 42 42 H 1.09001 * 110.72436 * 155.76627 * 21 20 19 43 43 H 1.09002 * 109.47153 * 175.71579 * 23 22 21 44 44 H 1.09001 * 109.46832 * 55.71770 * 23 22 21 45 45 H 1.09004 * 109.47261 * 295.71751 * 23 22 21 46 46 H 0.96995 * 120.00080 * 359.97438 * 26 24 22 47 47 H 1.09000 * 109.46860 * 59.99698 * 27 26 24 48 48 H 1.08998 * 109.47493 * 180.02562 * 27 26 24 49 49 H 1.09002 * 109.46619 * 299.99991 * 27 26 24 50 50 H 1.08992 * 109.92031 * 26.49394 * 28 19 18 51 51 H 1.09010 * 109.91783 * 265.19313 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7438 1.7908 2.3951 6 6 1.4459 2.3719 2.8937 7 6 1.4430 3.8846 2.6646 8 6 0.1453 4.4658 3.1638 9 1 -0.6027 3.8207 3.6005 10 6 -0.0873 5.8210 3.0622 11 7 0.8233 6.6065 2.5300 12 14 -1.6962 6.5413 3.6804 13 1 -1.5507 6.9252 5.1076 14 1 -2.0418 7.7419 2.8777 15 1 -2.7751 5.5296 3.5474 16 7 3.8376 1.6377 3.0865 17 7 4.7530 1.1129 2.3526 18 6 4.2884 0.9008 1.1439 19 7 4.9833 0.3494 0.0792 20 6 4.3614 -0.9262 -0.3590 21 6 5.5040 -1.6302 -1.1332 22 6 6.7588 -1.2605 -0.3092 23 6 7.9388 -0.9716 -1.2393 24 6 7.1068 -2.3734 0.6456 25 8 7.0773 -2.1774 1.8420 26 7 7.4508 -3.5866 0.1697 27 6 7.7896 -4.6684 1.0977 28 6 6.3687 0.0093 0.4697 29 1 -0.5399 -0.9352 -0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6214 1.4026 -0.9313 34 1 0.6141 1.9208 2.3526 35 1 1.3410 2.1655 3.9589 36 1 2.2747 4.3357 3.2058 37 1 1.5480 4.0909 1.5995 38 1 0.6594 7.5598 2.4582 39 1 4.0565 -1.5212 0.5020 40 1 3.5127 -0.7349 -1.0156 41 1 5.5801 -1.2397 -2.1479 42 1 5.3543 -2.7098 -1.1444 43 1 8.7933 -0.6393 -0.6498 44 1 7.6604 -0.1912 -1.9476 45 1 8.2032 -1.8785 -1.7832 46 1 7.4741 -3.7434 -0.7872 47 1 6.9369 -4.8717 1.7455 48 1 8.0397 -5.5665 0.5331 49 1 8.6447 -4.3715 1.7050 50 1 6.4158 -0.1833 1.5415 51 1 7.0400 0.8270 0.2068 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340422782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:18 Heat of formation + Delta-G solvation = 70.789595 kcal Electronic energy + Delta-G solvation = -31497.487048 eV Core-core repulsion = 27434.002687 eV Total energy + Delta-G solvation = -4063.484362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.58609 -40.85318 -38.34556 -36.11134 -35.06733 -34.34332 -33.59460 -32.52995 -31.54290 -30.29643 -28.19867 -27.30937 -26.76106 -26.29789 -25.15798 -22.90370 -22.61299 -21.79377 -21.04880 -20.19386 -19.65454 -19.56986 -17.93063 -16.74255 -16.49111 -16.27699 -16.17077 -15.94182 -15.63724 -15.08485 -14.69690 -14.48059 -14.28593 -14.11015 -13.75536 -13.69727 -13.34687 -13.17885 -13.06998 -12.83037 -12.68681 -12.56614 -12.41504 -12.35766 -12.09108 -11.81993 -11.55404 -11.32515 -11.25782 -11.22718 -10.98506 -10.88897 -10.66781 -10.33156 -10.04439 -9.99336 -9.84427 -9.71884 -9.58744 -9.50551 -9.26821 -9.19225 -8.38673 -7.89592 -6.02803 -4.07013 1.86627 2.20806 2.32117 2.65868 2.88055 3.31339 3.36026 3.37978 3.40368 3.82980 3.99905 4.11701 4.30713 4.43069 4.54667 4.67743 4.78707 4.81238 4.89431 4.91648 5.00614 5.09555 5.13345 5.14993 5.24381 5.32990 5.35079 5.41759 5.43285 5.45900 5.54208 5.57686 5.63156 5.67385 5.72547 5.80866 5.94394 6.06156 6.30414 6.33368 6.38349 6.47234 6.56265 6.58580 6.73120 6.98368 7.07199 7.48976 7.58879 7.73447 7.89250 7.95058 8.32518 8.99257 9.30832 9.57379 11.08235 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019563 B = 0.002420 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.948706 B =11566.449399 C =11968.025756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.190 4.190 3 C 0.136 3.864 4 N -0.473 5.473 5 C 0.215 3.785 6 C -0.030 4.030 7 C 0.032 3.968 8 C -0.523 4.523 9 H 0.059 0.941 10 C 0.059 3.941 11 N -0.892 5.892 12 Si 0.894 3.106 13 H -0.279 1.279 14 H -0.287 1.287 15 H -0.273 1.273 16 N -0.295 5.295 17 N -0.314 5.314 18 C 0.325 3.675 19 N -0.427 5.427 20 C 0.032 3.968 21 C -0.109 4.109 22 C -0.093 4.093 23 C -0.133 4.133 24 C 0.520 3.480 25 O -0.520 6.520 26 N -0.736 5.736 27 C 0.087 3.913 28 C 0.056 3.944 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.026 0.974 37 H 0.014 0.986 38 H 0.262 0.738 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.401 0.599 47 H 0.059 0.941 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.107 0.893 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 -23.511 -15.142 29.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.209 4.209 3 C 0.013 3.987 4 N -0.167 5.167 5 C -0.052 4.052 6 C -0.070 4.070 7 C -0.006 4.006 8 C -0.561 4.561 9 H 0.077 0.923 10 C -0.143 4.143 11 N -0.530 5.530 12 Si 0.722 3.278 13 H -0.205 1.205 14 H -0.213 1.213 15 H -0.198 1.198 16 N -0.133 5.133 17 N -0.158 5.158 18 C -0.032 4.032 19 N -0.151 5.151 20 C -0.095 4.095 21 C -0.147 4.147 22 C -0.097 4.097 23 C -0.190 4.190 24 C 0.305 3.695 25 O -0.394 6.394 26 N -0.388 5.388 27 C -0.057 4.057 28 C -0.072 4.072 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.044 0.956 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.235 0.765 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.125 0.875 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.326 -22.759 -13.535 28.800 hybrid contribution -1.656 -0.165 -0.783 1.839 sum 9.670 -22.925 -14.318 28.706 Atomic orbital electron populations 1.24052 0.95556 1.02880 0.96616 1.23180 0.96503 0.97826 1.03365 1.20970 0.92198 0.97524 0.87977 1.46151 1.10365 1.48291 1.11918 1.25566 0.99888 0.99298 0.80441 1.20423 0.86019 0.99432 1.01134 1.19069 0.98018 0.86330 0.97208 1.21134 1.01746 0.92729 1.40527 0.92327 1.25015 0.96835 0.97223 0.95214 1.69976 1.34015 1.04634 1.44396 0.86566 0.83681 0.78654 0.78930 1.20530 1.21266 1.19834 1.74026 0.97081 1.17115 1.25109 1.74492 1.24124 1.18835 0.98325 1.22531 0.84018 1.04131 0.92525 1.61560 1.02705 1.23757 1.27070 1.23547 0.98071 0.88680 0.99233 1.22654 0.91864 1.00635 0.99551 1.21639 0.97873 0.94497 0.95737 1.21839 0.96164 1.02458 0.98586 1.20427 0.76341 0.83329 0.89370 1.90773 1.50819 1.81679 1.16122 1.45741 1.71107 1.11486 1.10464 1.21549 1.01238 0.88933 0.93997 1.22983 0.86776 0.94889 1.02511 0.87856 0.87312 0.87153 0.87245 0.88024 0.91323 0.89408 0.95595 0.96814 0.92877 0.92705 0.88623 0.88707 0.90168 0.91580 0.90461 0.92044 0.76546 0.92197 0.90652 0.92104 0.87519 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 14.32 29.01 0.42 -1.15 16 2 C -0.19 -2.13 8.94 -36.03 -0.32 -2.46 16 3 C 0.14 1.86 5.57 -5.19 -0.03 1.83 16 4 N -0.47 -8.41 2.79 -115.37 -0.32 -8.73 16 5 C 0.22 4.55 7.32 -154.01 -1.13 3.42 16 6 C -0.03 -0.64 5.36 -27.88 -0.15 -0.79 16 7 C 0.03 0.83 4.95 -27.89 -0.14 0.69 16 8 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 9 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 12 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 N -0.30 -6.90 12.18 32.99 0.40 -6.50 16 17 N -0.31 -6.85 10.70 30.31 0.32 -6.53 16 18 C 0.32 5.90 7.03 -318.88 -2.24 3.66 16 19 N -0.43 -5.94 5.32 -170.55 -0.91 -6.84 16 20 C 0.03 0.33 5.04 -1.90 -0.01 0.32 16 21 C -0.11 -0.76 6.14 -24.87 -0.15 -0.91 16 22 C -0.09 -0.83 0.80 -154.30 -0.12 -0.95 16 23 C -0.13 -0.80 8.14 37.16 0.30 -0.49 16 24 C 0.52 5.54 6.45 -10.98 -0.07 5.47 16 25 O -0.52 -8.27 15.24 5.56 0.08 -8.18 16 26 N -0.74 -4.91 5.34 -67.07 -0.36 -5.27 16 27 C 0.09 0.53 10.70 59.85 0.64 1.17 16 28 C 0.06 0.74 5.74 -2.75 -0.02 0.72 16 29 H 0.10 0.87 8.06 -52.49 -0.42 0.44 16 30 H 0.11 1.15 7.84 -52.49 -0.41 0.74 16 31 H 0.11 1.15 6.23 -52.49 -0.33 0.82 16 32 H 0.11 1.60 7.55 -51.93 -0.39 1.21 16 33 H 0.10 1.21 7.95 -51.93 -0.41 0.80 16 34 H 0.07 1.30 7.95 -51.93 -0.41 0.89 16 35 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.05 0.68 7.96 -51.93 -0.41 0.27 16 40 H 0.10 0.85 5.86 -51.93 -0.30 0.55 16 41 H 0.09 0.49 7.84 -51.93 -0.41 0.09 16 42 H 0.08 0.42 7.61 -51.93 -0.40 0.03 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.43 8.11 -51.93 -0.42 0.01 16 45 H 0.06 0.22 7.54 -51.93 -0.39 -0.17 16 46 H 0.40 1.36 8.19 -40.82 -0.33 1.03 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.11 1.84 5.12 -51.93 -0.27 1.57 16 51 H 0.09 1.20 7.68 -51.92 -0.40 0.81 16 LS Contribution 411.34 15.07 6.20 6.20 Total: -1.00 -37.41 411.34 -10.51 -47.92 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -8.21 Total: 0.27 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.43 Total: -2.66 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.13 Total: -59.90 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.18 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.41 -10.51 -47.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340422782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.710 kcal (2) G-P(sol) polarization free energy of solvation -37.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds