Wall clock time and date at job start Wed Apr 1 2020 04:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00071 * 2 1 4 4 N 1.46498 * 109.46973 * 124.99834 * 3 2 1 5 5 C 1.36740 * 127.14079 * 270.15121 * 4 3 2 6 6 C 1.50700 * 126.34403 * 359.96842 * 5 4 3 7 7 C 1.52996 * 109.47137 * 270.28300 * 6 5 4 8 8 C 1.50697 * 109.47271 * 180.02562 * 7 6 5 9 9 H 1.07995 * 119.99869 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99759 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00454 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99749 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47215 * 90.00017 * 12 10 8 14 14 H 1.48495 * 109.47335 * 209.99863 * 12 10 8 15 15 H 1.48502 * 109.47307 * 330.00001 * 12 10 8 16 16 N 1.30297 * 107.30743 * 180.22715 * 5 4 3 17 17 N 1.28533 * 110.05003 * 359.77384 * 16 5 4 18 18 C 1.31213 * 109.86207 * 359.97438 * 17 16 5 19 19 N 1.38580 * 126.47306 * 179.97438 * 18 17 16 20 20 C 1.48526 * 111.00313 * 117.42429 * 19 18 17 21 21 C 1.54938 * 103.22940 * 200.27978 * 20 19 18 22 22 C 1.54604 * 102.92068 * 37.41084 * 21 20 19 23 23 C 1.52997 * 110.30887 * 219.12563 * 22 21 20 24 24 C 1.50704 * 110.39153 * 97.00002 * 22 21 20 25 25 O 1.21273 * 120.00322 * 242.84528 * 24 22 21 26 26 N 1.34778 * 119.99644 * 62.84860 * 24 22 21 27 27 C 1.46504 * 119.99989 * 179.97438 * 26 24 22 28 28 C 1.47905 * 110.99770 * 0.02562 * 19 18 17 29 29 H 1.07990 * 119.99891 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.99560 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99746 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47097 * 5.00406 * 3 2 1 33 33 H 1.08997 * 109.47302 * 244.99673 * 3 2 1 34 34 H 1.09001 * 109.47256 * 30.28551 * 6 5 4 35 35 H 1.09002 * 109.46674 * 150.28300 * 6 5 4 36 36 H 1.09001 * 109.47252 * 300.00253 * 7 6 5 37 37 H 1.08998 * 109.46850 * 59.99623 * 7 6 5 38 38 H 0.96999 * 120.00028 * 179.97438 * 11 10 8 39 39 H 1.09007 * 110.66648 * 318.71132 * 20 19 18 40 40 H 1.08996 * 110.67245 * 81.84054 * 20 19 18 41 41 H 1.08996 * 110.72459 * 279.05350 * 21 20 19 42 42 H 1.09001 * 110.72436 * 155.76627 * 21 20 19 43 43 H 1.09002 * 109.47153 * 175.71579 * 23 22 21 44 44 H 1.09001 * 109.46832 * 55.71770 * 23 22 21 45 45 H 1.09004 * 109.47261 * 295.71751 * 23 22 21 46 46 H 0.96995 * 120.00080 * 359.97438 * 26 24 22 47 47 H 1.09000 * 109.46860 * 59.99698 * 27 26 24 48 48 H 1.08998 * 109.47493 * 180.02562 * 27 26 24 49 49 H 1.09002 * 109.46619 * 299.99991 * 27 26 24 50 50 H 1.08992 * 109.92031 * 26.49394 * 28 19 18 51 51 H 1.09010 * 109.91783 * 265.19313 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7438 1.7908 2.3951 6 6 1.4459 2.3719 2.8937 7 6 1.4430 3.8846 2.6646 8 6 0.1453 4.4658 3.1638 9 1 -0.6027 3.8207 3.6005 10 6 -0.0873 5.8210 3.0622 11 7 0.8233 6.6065 2.5300 12 14 -1.6962 6.5413 3.6804 13 1 -1.5507 6.9252 5.1076 14 1 -2.0418 7.7419 2.8777 15 1 -2.7751 5.5296 3.5474 16 7 3.8376 1.6377 3.0865 17 7 4.7530 1.1129 2.3526 18 6 4.2884 0.9008 1.1439 19 7 4.9833 0.3494 0.0792 20 6 4.3614 -0.9262 -0.3590 21 6 5.5040 -1.6302 -1.1332 22 6 6.7588 -1.2605 -0.3092 23 6 7.9388 -0.9716 -1.2393 24 6 7.1068 -2.3734 0.6456 25 8 7.0773 -2.1774 1.8420 26 7 7.4508 -3.5866 0.1697 27 6 7.7896 -4.6684 1.0977 28 6 6.3687 0.0093 0.4697 29 1 -0.5399 -0.9352 -0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6214 1.4026 -0.9313 34 1 0.6141 1.9208 2.3526 35 1 1.3410 2.1655 3.9589 36 1 2.2747 4.3357 3.2058 37 1 1.5480 4.0909 1.5995 38 1 0.6594 7.5598 2.4582 39 1 4.0565 -1.5212 0.5020 40 1 3.5127 -0.7349 -1.0156 41 1 5.5801 -1.2397 -2.1479 42 1 5.3543 -2.7098 -1.1444 43 1 8.7933 -0.6393 -0.6498 44 1 7.6604 -0.1912 -1.9476 45 1 8.2032 -1.8785 -1.7832 46 1 7.4741 -3.7434 -0.7872 47 1 6.9369 -4.8717 1.7455 48 1 8.0397 -5.5665 0.5331 49 1 8.6447 -4.3715 1.7050 50 1 6.4158 -0.1833 1.5415 51 1 7.0400 0.8270 0.2068 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340422782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:16 Heat of formation + Delta-G solvation = 45.749821 kcal Electronic energy + Delta-G solvation = -31498.572854 eV Core-core repulsion = 27434.002687 eV Total energy + Delta-G solvation = -4064.570168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.08077 -41.72026 -39.31126 -37.32947 -36.12053 -35.81438 -34.78656 -33.90029 -33.20810 -31.27809 -29.74904 -28.07172 -27.77283 -27.15349 -27.06288 -23.88984 -23.78914 -23.30550 -22.23442 -21.60743 -20.66563 -20.54810 -18.97200 -18.58624 -17.73548 -17.44866 -17.14427 -17.01956 -16.64513 -16.45612 -15.95320 -15.68393 -15.38740 -15.09982 -15.07900 -14.80246 -14.54338 -14.30082 -14.20175 -13.99367 -13.75335 -13.48812 -13.19020 -13.16242 -13.13242 -13.10809 -12.87044 -12.67005 -12.64402 -12.49925 -12.40243 -12.09888 -11.95934 -11.88528 -11.82819 -11.49903 -11.30258 -11.16816 -10.86781 -10.70311 -10.59713 -10.54678 -10.18840 -9.38666 -8.20576 -6.33531 0.71217 0.88855 1.42520 1.44938 1.52301 1.53278 1.55592 1.78094 2.15260 2.41673 2.70369 3.13368 3.17307 3.29209 3.49156 3.65948 3.70394 3.78350 3.90003 3.99112 4.06840 4.10481 4.18076 4.24497 4.45085 4.50206 4.55152 4.57961 4.61079 4.61941 4.66521 4.75936 4.80807 4.84286 4.91591 4.93068 4.94706 4.95198 5.02781 5.08114 5.28939 5.37415 5.41150 5.41841 5.46892 5.53407 5.57158 5.64326 5.77238 6.10884 6.16391 6.49649 6.82080 7.21311 7.36509 7.73038 8.91655 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019563 B = 0.002420 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.948706 B =11566.449399 C =11968.025756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.200 4.200 3 C 0.130 3.870 4 N -0.468 5.468 5 C 0.200 3.800 6 C -0.012 4.012 7 C 0.045 3.955 8 C -0.538 4.538 9 H 0.073 0.927 10 C 0.000 4.000 11 N -0.935 5.935 12 Si 0.970 3.030 13 H -0.277 1.277 14 H -0.283 1.283 15 H -0.254 1.254 16 N -0.337 5.337 17 N -0.360 5.360 18 C 0.343 3.657 19 N -0.421 5.421 20 C 0.027 3.973 21 C -0.094 4.094 22 C -0.084 4.084 23 C -0.129 4.129 24 C 0.515 3.485 25 O -0.584 6.584 26 N -0.714 5.714 27 C 0.083 3.917 28 C 0.048 3.952 29 H 0.128 0.872 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.085 0.915 36 H -0.021 1.021 37 H -0.005 1.005 38 H 0.264 0.736 39 H 0.032 0.968 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.422 0.578 47 H 0.042 0.958 48 H 0.118 0.882 49 H 0.046 0.954 50 H 0.064 0.936 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -26.160 -18.488 33.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.219 4.219 3 C 0.009 3.991 4 N -0.162 5.162 5 C -0.070 4.070 6 C -0.052 4.052 7 C 0.007 3.993 8 C -0.575 4.575 9 H 0.091 0.909 10 C -0.198 4.198 11 N -0.575 5.575 12 Si 0.794 3.206 13 H -0.203 1.203 14 H -0.209 1.209 15 H -0.178 1.178 16 N -0.175 5.175 17 N -0.204 5.204 18 C -0.015 4.015 19 N -0.146 5.146 20 C -0.099 4.099 21 C -0.132 4.132 22 C -0.088 4.088 23 C -0.186 4.186 24 C 0.301 3.699 25 O -0.464 6.464 26 N -0.366 5.366 27 C -0.061 4.061 28 C -0.079 4.079 29 H 0.146 0.854 30 H 0.122 0.878 31 H 0.140 0.860 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.114 0.886 35 H 0.103 0.897 36 H -0.002 1.002 37 H 0.013 0.987 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.136 0.864 41 H 0.146 0.854 42 H 0.126 0.874 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.115 0.885 46 H 0.259 0.741 47 H 0.061 0.939 48 H 0.136 0.864 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.941 -25.470 -16.954 32.171 hybrid contribution -1.145 0.605 0.183 1.308 sum 8.796 -24.866 -16.770 31.256 Atomic orbital electron populations 1.24262 0.95172 1.03875 0.94324 1.23056 0.96764 0.96729 1.05314 1.21284 0.91838 0.98833 0.87164 1.46319 1.10765 1.47309 1.11779 1.25364 0.99324 1.00339 0.81938 1.20121 0.87304 0.96258 1.01473 1.18821 0.96030 0.89376 0.95113 1.21561 1.02325 0.93371 1.40285 0.90873 1.26026 1.00785 0.97765 0.95239 1.70133 1.36484 1.05020 1.45845 0.85376 0.79150 0.78045 0.78042 1.20289 1.20905 1.17794 1.73895 0.98200 1.18324 1.27068 1.74410 1.24739 1.21032 1.00215 1.23003 0.83930 1.02124 0.92437 1.61746 1.02916 1.25511 1.24382 1.23757 1.00224 0.86843 0.99109 1.22771 0.88470 1.02067 0.99910 1.21597 1.00183 0.91610 0.95397 1.21876 0.94196 1.04552 0.97991 1.20808 0.75718 0.84677 0.88683 1.90762 1.53876 1.82842 1.18905 1.45602 1.69040 1.10207 1.11769 1.21673 0.99934 0.90088 0.94394 1.23000 0.86545 0.97369 1.00979 0.85356 0.87790 0.85981 0.88459 0.86080 0.88627 0.89689 1.00229 0.98677 0.92773 0.94968 0.86381 0.85396 0.87433 0.92823 0.89341 0.88509 0.74055 0.93920 0.86370 0.93564 0.91788 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 14.32 67.78 0.97 -1.49 16 2 C -0.20 -4.08 8.94 25.64 0.23 -3.85 16 3 C 0.13 3.45 5.57 85.63 0.48 3.93 16 4 N -0.47 -17.07 2.79 -518.91 -1.45 -18.51 16 5 C 0.20 8.85 7.32 137.64 1.01 9.86 16 6 C -0.01 -0.52 5.36 29.85 0.16 -0.36 16 7 C 0.04 2.44 4.95 29.85 0.15 2.59 16 8 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16 9 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 10 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 11 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 12 Si 0.97 43.83 29.54 68.60 2.03 45.85 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 H -0.25 -10.63 7.11 99.48 0.71 -9.93 16 16 N -0.34 -16.87 12.18 -49.54 -0.60 -17.48 16 17 N -0.36 -16.88 10.70 -58.00 -0.62 -17.50 16 18 C 0.34 12.95 7.03 260.11 1.83 14.78 16 19 N -0.42 -11.64 5.32 -693.50 -3.69 -15.33 16 20 C 0.03 0.51 5.04 86.65 0.44 0.95 16 21 C -0.09 -0.95 6.14 31.80 0.20 -0.75 16 22 C -0.08 -1.35 0.80 -52.05 -0.04 -1.39 16 23 C -0.13 -1.15 8.14 71.98 0.59 -0.57 16 24 C 0.51 10.66 6.45 87.66 0.57 11.22 16 25 O -0.58 -19.77 15.24 -3.01 -0.05 -19.82 16 26 N -0.71 -7.80 5.34 -484.51 -2.59 -10.39 16 27 C 0.08 0.88 10.70 127.77 1.37 2.25 16 28 C 0.05 1.33 5.74 86.45 0.50 1.83 16 29 H 0.13 1.67 8.06 -2.92 -0.02 1.65 16 30 H 0.10 1.97 7.84 -2.91 -0.02 1.95 16 31 H 0.12 2.23 6.23 -2.91 -0.02 2.21 16 32 H 0.10 2.84 7.55 -2.39 -0.02 2.82 16 33 H 0.12 2.69 7.95 -2.39 -0.02 2.67 16 34 H 0.10 3.61 7.95 -2.39 -0.02 3.59 16 35 H 0.08 3.74 8.14 -2.39 -0.02 3.72 16 36 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 37 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.03 0.77 7.96 -2.38 -0.02 0.76 16 40 H 0.12 1.71 5.86 -2.39 -0.01 1.70 16 41 H 0.13 0.57 7.84 -2.39 -0.02 0.55 16 42 H 0.11 0.58 7.61 -2.39 -0.02 0.56 16 43 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.09 0.65 8.11 -2.39 -0.02 0.63 16 45 H 0.10 0.21 7.54 -2.38 -0.02 0.19 16 46 H 0.42 0.99 8.19 -92.71 -0.76 0.23 16 47 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 49 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 2.40 5.12 -2.39 -0.01 2.39 16 51 H 0.09 2.48 7.68 -2.38 -0.02 2.46 16 Total: -1.00 -90.28 411.34 2.61 -87.66 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.17 Total: 13.38 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 9.12 Total: 9.57 kcal Atomic # 7 Polarization: -127.98 SS G_CDS: -8.66 Total: -136.65 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -90.28 2.61 -87.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340422782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.413 kcal (2) G-P(sol) polarization free energy of solvation -90.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds