Wall clock time and date at job start Wed Apr 1 2020 04:29:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42895 * 114.00209 * 2 1
4 4 C 1.52990 * 109.47173 * 179.97438 * 3 2 1
5 5 N 1.46506 * 109.47166 * 180.02562 * 4 3 2
6 6 C 1.36740 * 127.13277 * 269.12289 * 5 4 3
7 7 C 1.50699 * 126.35044 * 359.96133 * 6 5 4
8 8 C 1.52996 * 109.47119 * 270.28827 * 7 6 5
9 9 C 1.50701 * 109.46807 * 180.02562 * 8 7 6
10 10 H 1.07996 * 120.00444 * 359.97438 * 9 8 7
11 11 C 1.37881 * 119.99972 * 180.02562 * 9 8 7
12 12 N 1.31514 * 119.99863 * 359.97438 * 11 9 8
13 13 Si 1.86798 * 120.00175 * 179.97438 * 11 9 8
14 14 H 1.48499 * 109.47173 * 59.99469 * 13 11 9
15 15 H 1.48502 * 109.47315 * 179.97438 * 13 11 9
16 16 H 1.48499 * 109.47105 * 299.99870 * 13 11 9
17 17 N 1.30300 * 107.29856 * 180.22719 * 6 5 4
18 18 N 1.28521 * 110.06031 * 359.77366 * 17 6 5
19 19 C 1.31223 * 109.85728 * 0.02562 * 18 17 6
20 20 N 1.38574 * 126.47395 * 179.97438 * 19 18 17
21 21 C 1.46845 * 111.00166 * 296.73165 * 20 19 18
22 22 C 1.53045 * 109.52655 * 185.83808 * 21 20 19
23 23 C 1.53117 * 109.27575 * 300.82353 * 22 21 20
24 24 C 1.53109 * 109.16454 * 57.65095 * 23 22 21
25 25 C 1.52997 * 109.50702 * 182.40332 * 24 23 22
26 26 C 1.47197 * 109.50457 * 62.28607 * 24 23 22
27 27 N 4.54855 * 96.17516 * 76.55419 * 2 1 3
28 28 C 1.46846 * 111.00068 * 60.93995 * 20 19 18
29 29 H 1.09000 * 109.46992 * 60.00252 * 1 2 3
30 30 H 1.09010 * 109.47168 * 179.97438 * 1 2 3
31 31 H 1.08994 * 109.47456 * 300.00092 * 1 2 3
32 32 H 1.08998 * 109.46748 * 59.99678 * 3 2 1
33 33 H 1.08996 * 109.46876 * 300.00011 * 3 2 1
34 34 H 1.08998 * 109.47504 * 60.00192 * 4 3 2
35 35 H 1.09004 * 109.47458 * 300.00043 * 4 3 2
36 36 H 1.08999 * 109.46720 * 30.28939 * 7 6 5
37 37 H 1.09001 * 109.47024 * 150.28312 * 7 6 5
38 38 H 1.08999 * 109.47416 * 299.99685 * 8 7 6
39 39 H 1.08992 * 109.47373 * 59.99927 * 8 7 6
40 40 H 0.97003 * 120.00018 * 180.02562 * 12 11 9
41 41 H 1.09004 * 109.46347 * 65.82356 * 21 20 19
42 42 H 1.09005 * 109.45714 * 305.85010 * 21 20 19
43 43 H 1.09001 * 109.50486 * 180.87947 * 22 21 20
44 44 H 1.09000 * 109.49957 * 60.75917 * 22 21 20
45 45 H 1.08997 * 109.52303 * 177.56181 * 23 22 21
46 46 H 1.09006 * 109.51956 * 297.74189 * 23 22 21
47 47 H 1.09009 * 109.46965 * 60.00222 * 25 24 23
48 48 H 1.09000 * 109.47674 * 179.97438 * 25 24 23
49 49 H 1.08999 * 109.47254 * 300.00561 * 25 24 23
50 50 H 1.08998 * 109.46457 * 294.18104 * 28 20 19
51 51 H 1.09003 * 109.46444 * 54.14500 * 28 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5354 1.1846 0.0006
5 7 4.1313 2.5229 0.0013
6 6 4.4828 3.2705 -1.0884
7 6 4.3301 2.8702 -2.5332
8 6 5.5935 2.1424 -2.9970
9 6 5.4410 1.7426 -4.4420
10 1 4.5336 1.9832 -4.9760
11 6 6.4595 1.0688 -5.0820
12 7 7.5642 0.7754 -4.4316
13 14 6.2702 0.5726 -6.8729
14 1 6.0652 1.7862 -7.7038
15 1 7.4965 -0.1337 -7.3232
16 1 5.0987 -0.3286 -7.0158
17 7 4.9795 4.3908 -0.6458
18 7 4.9615 4.4038 0.6393
19 6 4.4486 3.2829 1.0892
20 7 4.2678 2.9348 2.4183
21 6 5.5556 2.8404 3.1175
22 6 5.3296 2.3149 4.5370
23 6 4.3903 3.2654 5.2844
24 6 3.0747 3.3837 4.5101
25 6 2.1527 4.3782 5.2184
26 6 2.4215 2.0661 4.4467
27 7 1.9183 1.0515 4.3982
28 6 3.3660 3.8783 3.0914
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8899
32 1 1.6886 1.8463 0.8900
33 1 1.6886 1.8463 -0.8900
34 1 3.8574 0.6435 -0.8891
35 1 3.8567 0.6438 0.8909
36 1 3.4704 2.2084 -2.6379
37 1 4.1793 3.7609 -3.1430
38 1 6.4532 2.8042 -2.8923
39 1 5.7443 1.2517 -2.3872
40 1 8.2810 0.3017 -4.8820
41 1 6.0164 3.8271 3.1647
42 1 6.2126 2.1582 2.5779
43 1 6.2839 2.2597 5.0609
44 1 4.8814 1.3224 4.4905
45 1 4.1920 2.8723 6.2815
46 1 4.8551 4.2481 5.3651
47 1 2.6366 5.3539 5.2632
48 1 1.2164 4.4624 4.6666
49 1 1.9483 4.0273 6.2300
50 1 3.8371 4.8601 3.1386
51 1 2.4327 3.9500 2.5330
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001342989151.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:29:22
Heat of formation + Delta-G solvation = 54.842984 kcal
Electronic energy + Delta-G solvation = -31739.885968 eV
Core-core repulsion = 27675.710110 eV
Total energy + Delta-G solvation = -4064.175859 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-42.76028 -40.12249 -38.11905 -36.59043 -35.11772 -34.74421 -33.79798 -32.55970
-31.62442 -29.79353 -28.60989 -27.23362 -26.49034 -25.51636 -24.81852 -23.57565
-23.34929 -22.09179 -21.58421 -20.49003 -19.96686 -17.56458 -16.94038 -16.82618
-16.47522 -16.10628 -15.96359 -15.69375 -15.21451 -15.06108 -14.76277 -14.53633
-14.41931 -14.36487 -13.91375 -13.74737 -13.41313 -13.10585 -13.05212 -12.83940
-12.56994 -12.46255 -12.44716 -12.29161 -12.12353 -11.88243 -11.67208 -11.54314
-11.36824 -11.31933 -11.18959 -10.99116 -10.91294 -10.86423 -10.72192 -10.45952
-10.05634 -9.95578 -9.84871 -9.78323 -9.26029 -8.90931 -8.51913 -8.41324
-6.05894 -4.10229 1.92746 2.26598 2.63426 2.67325 3.14409 3.31235
3.31980 3.36063 3.38101 3.58715 3.94262 4.17404 4.31786 4.40841
4.42244 4.63418 4.68757 4.82093 4.87448 4.90865 5.00702 5.08223
5.12869 5.17816 5.18783 5.21252 5.22245 5.30181 5.30942 5.33681
5.37019 5.48130 5.49971 5.51265 5.53123 5.60180 5.64341 5.68867
5.79793 5.93155 6.25743 6.28205 6.39756 6.48757 6.61210 6.85424
6.91729 7.34138 7.43993 7.53295 7.65760 7.90642 8.27870 8.95212
9.04224 9.54465 11.05177
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.013050 B = 0.002967 C = 0.002647
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2145.139184 B = 9434.552554 C =10577.408810
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.382 6.382
3 C 0.057 3.943
4 C 0.115 3.885
5 N -0.460 5.460
6 C 0.223 3.777
7 C -0.034 4.034
8 C 0.033 3.967
9 C -0.525 4.525
10 H 0.058 0.942
11 C 0.060 3.940
12 N -0.892 5.892
13 Si 0.895 3.105
14 H -0.275 1.275
15 H -0.287 1.287
16 H -0.276 1.276
17 N -0.295 5.295
18 N -0.306 5.306
19 C 0.320 3.680
20 N -0.463 5.463
21 C 0.064 3.936
22 C -0.121 4.121
23 C -0.110 4.110
24 C 0.040 3.960
25 C -0.141 4.141
26 C 0.224 3.776
27 N -0.429 5.429
28 C 0.079 3.921
29 H 0.043 0.957
30 H 0.089 0.911
31 H 0.039 0.961
32 H 0.051 0.949
33 H 0.057 0.943
34 H 0.113 0.887
35 H 0.104 0.896
36 H 0.070 0.930
37 H 0.091 0.909
38 H 0.026 0.974
39 H 0.015 0.985
40 H 0.263 0.737
41 H 0.060 0.940
42 H 0.081 0.919
43 H 0.083 0.917
44 H 0.071 0.929
45 H 0.077 0.923
46 H 0.088 0.912
47 H 0.080 0.920
48 H 0.066 0.934
49 H 0.070 0.930
50 H 0.077 0.923
51 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.530 5.045 21.370 24.800
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 O -0.300 6.300
3 C -0.021 4.021
4 C -0.008 4.008
5 N -0.154 5.154
6 C -0.044 4.044
7 C -0.074 4.074
8 C -0.006 4.006
9 C -0.564 4.564
10 H 0.077 0.923
11 C -0.142 4.142
12 N -0.530 5.530
13 Si 0.722 3.278
14 H -0.201 1.201
15 H -0.213 1.213
16 H -0.202 1.202
17 N -0.134 5.134
18 N -0.150 5.150
19 C -0.036 4.036
20 N -0.188 5.188
21 C -0.063 4.063
22 C -0.159 4.159
23 C -0.149 4.149
24 C 0.036 3.964
25 C -0.200 4.200
26 C -0.095 4.095
27 N -0.103 5.103
28 C -0.050 4.050
29 H 0.062 0.938
30 H 0.107 0.893
31 H 0.058 0.942
32 H 0.069 0.931
33 H 0.075 0.925
34 H 0.131 0.869
35 H 0.122 0.878
36 H 0.089 0.911
37 H 0.109 0.891
38 H 0.044 0.956
39 H 0.033 0.967
40 H 0.072 0.928
41 H 0.078 0.922
42 H 0.100 0.900
43 H 0.102 0.898
44 H 0.090 0.910
45 H 0.096 0.904
46 H 0.106 0.894
47 H 0.099 0.901
48 H 0.085 0.915
49 H 0.089 0.911
50 H 0.095 0.905
51 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -11.618 4.131 21.298 24.610
hybrid contribution -0.244 -0.442 -0.983 1.105
sum -11.862 3.689 20.315 23.812
Atomic orbital electron populations
1.22746 0.80406 1.02984 0.99969 1.87830 1.20142 1.26593 1.95452
1.22647 0.93082 0.85549 1.00849 1.21522 0.91867 0.80737 1.06721
1.46168 1.47064 1.15898 1.06252 1.25719 0.97738 0.88413 0.92533
1.20514 1.02626 1.01841 0.82447 1.19065 0.90556 0.94811 0.96125
1.21080 1.02158 1.37168 0.95956 0.92340 1.25001 0.95168 0.95757
0.98241 1.69957 1.05923 1.40321 1.36813 0.86616 0.77440 0.78780
0.84943 1.20083 1.21263 1.20178 1.74085 1.19219 1.18164 1.01954
1.74495 1.18350 1.17631 1.04545 1.21994 1.04243 0.89824 0.87521
1.58414 1.14922 1.49305 0.96202 1.22212 0.88246 1.01877 0.93986
1.21692 1.00337 0.99625 0.94255 1.21751 0.92761 1.01679 0.98689
1.18403 0.95378 0.85852 0.96809 1.21852 0.99071 0.98381 1.00656
1.28565 0.93332 0.94344 0.93258 1.81109 1.09600 1.11472 1.08113
1.22190 0.97034 0.94223 0.91520 0.93815 0.89276 0.94203 0.93103
0.92521 0.86908 0.87801 0.91139 0.89062 0.95559 0.96702 0.92779
0.92185 0.90019 0.89841 0.91043 0.90393 0.89376 0.90063 0.91452
0.91084 0.90531 0.89955
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.37 11.01 101.05 1.11 1.49 16
2 O -0.38 -5.34 10.70 -35.23 -0.38 -5.71 16
3 C 0.06 0.76 6.26 37.15 0.23 0.99 16
4 C 0.12 1.71 6.27 -4.04 -0.03 1.69 16
5 N -0.46 -7.65 2.81 -114.08 -0.32 -7.97 16
6 C 0.22 4.29 7.32 -154.01 -1.13 3.16 16
7 C -0.03 -0.69 5.35 -27.89 -0.15 -0.84 16
8 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16
9 C -0.53 -14.31 9.11 -34.44 -0.31 -14.62 16
10 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16
11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16
12 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16
13 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16
14 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16
15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
17 N -0.29 -6.05 12.18 32.99 0.40 -5.65 16
18 N -0.31 -5.59 12.19 30.31 0.37 -5.22 16
19 C 0.32 5.02 6.41 -318.88 -2.05 2.98 16
20 N -0.46 -5.53 4.26 -174.54 -0.74 -6.27 16
21 C 0.06 0.66 5.39 -3.83 -0.02 0.64 16
22 C -0.12 -0.91 5.83 -26.65 -0.16 -1.06 16
23 C -0.11 -0.61 4.76 -26.61 -0.13 -0.74 16
24 C 0.04 0.28 0.72 -157.22 -0.11 0.16 16
25 C -0.14 -0.62 8.44 37.16 0.31 -0.31 16
26 C 0.22 2.28 12.33 -20.84 -0.26 2.02 16
27 N -0.43 -5.61 18.52 42.06 0.78 -4.83 16
28 C 0.08 0.73 4.06 -3.83 -0.02 0.71 16
29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16
31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
34 H 0.11 1.81 7.84 -51.93 -0.41 1.40 16
35 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16
36 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16
37 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16
38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16
40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
42 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16
43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
44 H 0.07 0.66 7.36 -51.93 -0.38 0.27 16
45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
46 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16
47 H 0.08 0.24 8.14 -51.92 -0.42 -0.19 16
48 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
49 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16
50 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16
51 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16
LS Contribution 422.27 15.07 6.36 6.36
Total: -1.00 -33.96 422.27 -9.51 -43.47
By element:
Atomic # 1 Polarization: 5.54 SS G_CDS: -8.77 Total: -3.23 kcal
Atomic # 6 Polarization: 1.48 SS G_CDS: -2.93 Total: -1.45 kcal
Atomic # 7 Polarization: -56.89 SS G_CDS: 1.22 Total: -55.67 kcal
Atomic # 8 Polarization: -5.34 SS G_CDS: -0.38 Total: -5.71 kcal
Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal
Total LS contribution 6.36 Total: 6.36 kcal
Total: -33.96 -9.51 -43.47 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001342989151.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.313 kcal
(2) G-P(sol) polarization free energy of solvation -33.961 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.352 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.843 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds