Wall clock time and date at job start Wed Apr 1 2020 04:29:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42895 * 114.00209 * 2 1
4 4 C 1.52990 * 109.47173 * 179.97438 * 3 2 1
5 5 N 1.46506 * 109.47166 * 180.02562 * 4 3 2
6 6 C 1.36740 * 127.13277 * 269.12289 * 5 4 3
7 7 C 1.50699 * 126.35044 * 359.96133 * 6 5 4
8 8 C 1.52996 * 109.47119 * 270.28827 * 7 6 5
9 9 C 1.50701 * 109.46807 * 180.02562 * 8 7 6
10 10 H 1.07996 * 120.00444 * 359.97438 * 9 8 7
11 11 C 1.37881 * 119.99972 * 180.02562 * 9 8 7
12 12 N 1.31514 * 119.99863 * 359.97438 * 11 9 8
13 13 Si 1.86798 * 120.00175 * 179.97438 * 11 9 8
14 14 H 1.48499 * 109.47173 * 59.99469 * 13 11 9
15 15 H 1.48502 * 109.47315 * 179.97438 * 13 11 9
16 16 H 1.48499 * 109.47105 * 299.99870 * 13 11 9
17 17 N 1.30300 * 107.29856 * 180.22719 * 6 5 4
18 18 N 1.28521 * 110.06031 * 359.77366 * 17 6 5
19 19 C 1.31223 * 109.85728 * 0.02562 * 18 17 6
20 20 N 1.38574 * 126.47395 * 179.97438 * 19 18 17
21 21 C 1.46845 * 111.00166 * 296.73165 * 20 19 18
22 22 C 1.53045 * 109.52655 * 185.83808 * 21 20 19
23 23 C 1.53117 * 109.27575 * 300.82353 * 22 21 20
24 24 C 1.53109 * 109.16454 * 57.65095 * 23 22 21
25 25 C 1.52997 * 109.50702 * 182.40332 * 24 23 22
26 26 C 1.47197 * 109.50457 * 62.28607 * 24 23 22
27 27 N 4.54855 * 96.17516 * 76.55419 * 2 1 3
28 28 C 1.46846 * 111.00068 * 60.93995 * 20 19 18
29 29 H 1.09000 * 109.46992 * 60.00252 * 1 2 3
30 30 H 1.09010 * 109.47168 * 179.97438 * 1 2 3
31 31 H 1.08994 * 109.47456 * 300.00092 * 1 2 3
32 32 H 1.08998 * 109.46748 * 59.99678 * 3 2 1
33 33 H 1.08996 * 109.46876 * 300.00011 * 3 2 1
34 34 H 1.08998 * 109.47504 * 60.00192 * 4 3 2
35 35 H 1.09004 * 109.47458 * 300.00043 * 4 3 2
36 36 H 1.08999 * 109.46720 * 30.28939 * 7 6 5
37 37 H 1.09001 * 109.47024 * 150.28312 * 7 6 5
38 38 H 1.08999 * 109.47416 * 299.99685 * 8 7 6
39 39 H 1.08992 * 109.47373 * 59.99927 * 8 7 6
40 40 H 0.97003 * 120.00018 * 180.02562 * 12 11 9
41 41 H 1.09004 * 109.46347 * 65.82356 * 21 20 19
42 42 H 1.09005 * 109.45714 * 305.85010 * 21 20 19
43 43 H 1.09001 * 109.50486 * 180.87947 * 22 21 20
44 44 H 1.09000 * 109.49957 * 60.75917 * 22 21 20
45 45 H 1.08997 * 109.52303 * 177.56181 * 23 22 21
46 46 H 1.09006 * 109.51956 * 297.74189 * 23 22 21
47 47 H 1.09009 * 109.46965 * 60.00222 * 25 24 23
48 48 H 1.09000 * 109.47674 * 179.97438 * 25 24 23
49 49 H 1.08999 * 109.47254 * 300.00561 * 25 24 23
50 50 H 1.08998 * 109.46457 * 294.18104 * 28 20 19
51 51 H 1.09003 * 109.46444 * 54.14500 * 28 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5354 1.1846 0.0006
5 7 4.1313 2.5229 0.0013
6 6 4.4828 3.2705 -1.0884
7 6 4.3301 2.8702 -2.5332
8 6 5.5935 2.1424 -2.9970
9 6 5.4410 1.7426 -4.4420
10 1 4.5336 1.9832 -4.9760
11 6 6.4595 1.0688 -5.0820
12 7 7.5642 0.7754 -4.4316
13 14 6.2702 0.5726 -6.8729
14 1 6.0652 1.7862 -7.7038
15 1 7.4965 -0.1337 -7.3232
16 1 5.0987 -0.3286 -7.0158
17 7 4.9795 4.3908 -0.6458
18 7 4.9615 4.4038 0.6393
19 6 4.4486 3.2829 1.0892
20 7 4.2678 2.9348 2.4183
21 6 5.5556 2.8404 3.1175
22 6 5.3296 2.3149 4.5370
23 6 4.3903 3.2654 5.2844
24 6 3.0747 3.3837 4.5101
25 6 2.1527 4.3782 5.2184
26 6 2.4215 2.0661 4.4467
27 7 1.9183 1.0515 4.3982
28 6 3.3660 3.8783 3.0914
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8899
32 1 1.6886 1.8463 0.8900
33 1 1.6886 1.8463 -0.8900
34 1 3.8574 0.6435 -0.8891
35 1 3.8567 0.6438 0.8909
36 1 3.4704 2.2084 -2.6379
37 1 4.1793 3.7609 -3.1430
38 1 6.4532 2.8042 -2.8923
39 1 5.7443 1.2517 -2.3872
40 1 8.2810 0.3017 -4.8820
41 1 6.0164 3.8271 3.1647
42 1 6.2126 2.1582 2.5779
43 1 6.2839 2.2597 5.0609
44 1 4.8814 1.3224 4.4905
45 1 4.1920 2.8723 6.2815
46 1 4.8551 4.2481 5.3651
47 1 2.6366 5.3539 5.2632
48 1 1.2164 4.4624 4.6666
49 1 1.9483 4.0273 6.2300
50 1 3.8371 4.8601 3.1386
51 1 2.4327 3.9500 2.5330
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001342989151.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:29:20
Heat of formation + Delta-G solvation = 35.696648 kcal
Electronic energy + Delta-G solvation = -31740.716216 eV
Core-core repulsion = 27675.710110 eV
Total energy + Delta-G solvation = -4065.006106 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.39 seconds
Orbital eigenvalues (eV)
-44.14610 -40.89259 -39.18338 -37.51704 -36.54632 -35.97093 -35.23728 -33.66426
-33.06160 -30.99152 -30.16096 -27.80526 -27.48434 -27.19227 -25.83357 -24.75654
-24.04245 -23.72356 -22.67725 -21.60733 -21.43813 -18.71903 -18.54132 -17.89782
-17.72253 -17.29002 -17.06544 -16.80292 -16.49577 -16.03744 -15.85940 -15.69046
-15.54908 -15.25702 -15.04944 -14.84375 -14.49780 -14.49017 -14.23347 -13.94812
-13.57400 -13.52372 -13.30821 -13.16304 -13.01311 -12.86841 -12.81766 -12.77596
-12.73419 -12.54411 -12.48188 -12.40543 -12.12490 -11.91461 -11.82433 -11.60799
-11.57939 -11.45856 -11.33862 -11.25437 -10.87088 -10.57114 -10.01741 -9.93817
-8.20991 -6.33279 0.57954 1.01055 1.42625 1.45661 1.53118 1.68052
1.84379 1.89669 2.32650 2.41439 2.82958 2.94223 3.13440 3.37781
3.48090 3.55242 3.69305 3.72073 3.83739 3.92876 3.95509 4.01596
4.12429 4.18252 4.27317 4.35365 4.37245 4.43556 4.48382 4.52194
4.60162 4.63851 4.69452 4.72616 4.73273 4.80324 4.84539 4.90089
4.96974 4.99373 5.06015 5.16638 5.30875 5.33916 5.41856 5.46506
5.56502 5.63718 5.77135 5.93288 6.10116 6.15375 6.66586 6.82111
7.36718 7.60310 8.90938
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.013050 B = 0.002967 C = 0.002647
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2145.139184 B = 9434.552554 C =10577.408810
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.404 6.404
3 C 0.069 3.931
4 C 0.118 3.882
5 N -0.460 5.460
6 C 0.207 3.793
7 C -0.018 4.018
8 C 0.044 3.956
9 C -0.540 4.540
10 H 0.072 0.928
11 C 0.002 3.998
12 N -0.934 5.934
13 Si 0.967 3.033
14 H -0.265 1.265
15 H -0.287 1.287
16 H -0.263 1.263
17 N -0.322 5.322
18 N -0.327 5.327
19 C 0.343 3.657
20 N -0.468 5.468
21 C 0.062 3.938
22 C -0.114 4.114
23 C -0.107 4.107
24 C 0.047 3.953
25 C -0.138 4.138
26 C 0.243 3.757
27 N -0.484 5.484
28 C 0.076 3.924
29 H 0.055 0.945
30 H 0.104 0.896
31 H 0.046 0.954
32 H 0.054 0.946
33 H 0.060 0.940
34 H 0.098 0.902
35 H 0.105 0.895
36 H 0.090 0.910
37 H 0.095 0.905
38 H -0.013 1.013
39 H -0.009 1.009
40 H 0.263 0.737
41 H 0.064 0.936
42 H 0.057 0.943
43 H 0.105 0.895
44 H 0.052 0.948
45 H 0.098 0.902
46 H 0.114 0.886
47 H 0.103 0.897
48 H 0.063 0.937
49 H 0.083 0.917
50 H 0.089 0.911
51 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.066 5.798 22.660 26.793
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.323 6.323
3 C -0.009 4.009
4 C -0.005 4.005
5 N -0.153 5.153
6 C -0.061 4.061
7 C -0.058 4.058
8 C 0.006 3.994
9 C -0.578 4.578
10 H 0.091 0.909
11 C -0.196 4.196
12 N -0.574 5.574
13 Si 0.791 3.209
14 H -0.190 1.190
15 H -0.213 1.213
16 H -0.188 1.188
17 N -0.162 5.162
18 N -0.170 5.170
19 C -0.014 4.014
20 N -0.195 5.195
21 C -0.064 4.064
22 C -0.152 4.152
23 C -0.145 4.145
24 C 0.042 3.958
25 C -0.196 4.196
26 C -0.075 4.075
27 N -0.159 5.159
28 C -0.052 4.052
29 H 0.073 0.927
30 H 0.122 0.878
31 H 0.064 0.936
32 H 0.073 0.927
33 H 0.078 0.922
34 H 0.117 0.883
35 H 0.123 0.877
36 H 0.108 0.892
37 H 0.114 0.886
38 H 0.006 0.994
39 H 0.009 0.991
40 H 0.072 0.928
41 H 0.082 0.918
42 H 0.076 0.924
43 H 0.123 0.877
44 H 0.071 0.929
45 H 0.116 0.884
46 H 0.133 0.867
47 H 0.122 0.878
48 H 0.082 0.918
49 H 0.102 0.898
50 H 0.107 0.893
51 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -13.183 4.895 22.605 26.622
hybrid contribution 0.247 -0.691 -1.271 1.467
sum -12.936 4.204 21.334 25.301
Atomic orbital electron populations
1.22963 0.78542 1.04322 1.00832 1.87799 1.22200 1.26675 1.95597
1.22473 0.91636 0.85661 1.01132 1.21535 0.93181 0.79759 1.06041
1.46235 1.46857 1.16209 1.06026 1.25375 0.99090 0.88950 0.92684
1.20185 1.00571 1.01721 0.83276 1.18819 0.91660 0.93436 0.95523
1.21556 1.02629 1.36732 0.96915 0.90948 1.25981 0.94748 0.95750
1.03154 1.70111 1.06938 1.41396 1.38917 0.85476 0.77646 0.78781
0.79024 1.19003 1.21267 1.18796 1.73990 1.19736 1.19136 1.03288
1.74433 1.19923 1.19039 1.03646 1.22434 1.01449 0.88634 0.88851
1.58710 1.16136 1.50057 0.94561 1.22293 0.87147 1.01688 0.95315
1.21673 1.01990 0.98964 0.92542 1.21839 0.91197 1.02617 0.98827
1.18634 0.96659 0.84709 0.95750 1.21904 0.98428 0.98525 1.00776
1.29224 0.92074 0.94507 0.91649 1.81125 1.11621 1.13318 1.09839
1.22344 0.96081 0.94267 0.92492 0.92684 0.87805 0.93552 0.92742
0.92164 0.88346 0.87653 0.89182 0.88621 0.99429 0.99087 0.92786
0.91756 0.92396 0.87704 0.92946 0.88398 0.86747 0.87793 0.91753
0.89784 0.89311 0.90584
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.58 11.01 113.37 1.25 1.82 16
2 O -0.40 -11.08 10.70 -148.98 -1.59 -12.67 16
3 C 0.07 1.83 6.26 71.98 0.45 2.28 16
4 C 0.12 3.60 6.27 86.37 0.54 4.14 16
5 N -0.46 -15.64 2.81 -514.85 -1.45 -17.09 16
6 C 0.21 8.19 7.32 137.64 1.01 9.20 16
7 C -0.02 -0.73 5.35 29.85 0.16 -0.57 16
8 C 0.04 2.30 4.96 29.85 0.15 2.45 16
9 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16
10 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16
11 C 0.00 0.10 5.46 84.66 0.46 0.56 16
12 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16
13 Si 0.97 43.62 29.54 68.60 2.03 45.64 16
14 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16
15 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16
16 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16
17 N -0.32 -13.55 12.18 -49.53 -0.60 -14.15 16
18 N -0.33 -12.06 12.19 -58.01 -0.71 -12.76 16
19 C 0.34 10.82 6.41 260.11 1.67 12.49 16
20 N -0.47 -10.90 4.26 -706.13 -3.01 -13.91 16
21 C 0.06 1.25 5.39 86.33 0.47 1.71 16
22 C -0.11 -1.48 5.83 30.65 0.18 -1.30 16
23 C -0.11 -0.81 4.76 30.67 0.15 -0.66 16
24 C 0.05 0.52 0.72 -53.94 -0.04 0.49 16
25 C -0.14 -0.72 8.44 71.98 0.61 -0.12 16
26 C 0.24 4.62 12.33 89.47 1.10 5.72 16
27 N -0.48 -12.43 18.52 19.98 0.37 -12.06 16
28 C 0.08 1.26 4.06 86.33 0.35 1.61 16
29 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16
30 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16
31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16
32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16
33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16
34 H 0.10 3.29 7.84 -2.39 -0.02 3.27 16
35 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16
36 H 0.09 3.29 7.91 -2.39 -0.02 3.27 16
37 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16
38 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16
39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16
40 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16
41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
42 H 0.06 1.42 8.10 -2.38 -0.02 1.40 16
43 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16
44 H 0.05 0.91 7.36 -2.39 -0.02 0.89 16
45 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16
46 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16
47 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16
48 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16
49 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16
50 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16
51 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16
Total: -1.00 -76.59 422.27 4.96 -71.64
By element:
Atomic # 1 Polarization: 10.94 SS G_CDS: 0.90 Total: 11.84 kcal
Atomic # 6 Polarization: 1.49 SS G_CDS: 8.73 Total: 10.22 kcal
Atomic # 7 Polarization: -121.56 SS G_CDS: -5.11 Total: -126.67 kcal
Atomic # 8 Polarization: -11.08 SS G_CDS: -1.59 Total: -12.67 kcal
Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal
Total: -76.59 4.96 -71.64 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001342989151.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.334 kcal
(2) G-P(sol) polarization free energy of solvation -76.593 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.637 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.697 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.39 seconds