Wall clock time and date at job start Wed Apr 1 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30295 * 126.34622 * 2 1 4 4 N 1.28528 * 110.05318 * 179.97438 * 3 2 1 5 5 C 1.31224 * 109.85838 * 359.73519 * 4 3 2 6 6 N 1.38584 * 126.47021 * 180.26020 * 5 4 3 7 7 C 1.46848 * 111.00070 * 66.71800 * 6 5 4 8 8 C 1.53033 * 109.52063 * 174.15689 * 7 6 5 9 9 C 1.53112 * 109.27847 * 59.18288 * 8 7 6 10 10 C 1.50705 * 109.52463 * 182.43728 * 9 8 7 11 11 H 1.07997 * 119.99720 * 119.67683 * 10 9 8 12 12 C 1.37869 * 119.99904 * 299.68457 * 10 9 8 13 13 N 1.31517 * 119.99993 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00108 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47462 * 59.99508 * 14 12 10 16 16 H 1.48503 * 109.47434 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.46891 * 299.99865 * 14 12 10 18 18 C 1.53124 * 109.15955 * 302.34046 * 9 8 7 19 19 C 1.46843 * 110.99971 * 302.50319 * 6 5 4 20 20 N 1.36447 * 107.05239 * 0.41041 * 5 4 3 21 21 C 1.46494 * 127.13569 * 179.87220 * 20 5 4 22 22 C 1.50693 * 109.47454 * 269.55793 * 21 20 5 23 23 O 1.21287 * 119.99984 * 0.02562 * 22 21 20 24 24 N 1.34779 * 120.00564 * 179.97438 * 22 21 20 25 25 C 1.46501 * 120.00415 * 179.97438 * 24 22 21 26 26 C 1.52998 * 109.47056 * 180.02562 * 25 24 22 27 27 C 1.53002 * 117.49584 * 243.61801 * 26 25 24 28 28 C 1.52993 * 60.00235 * 252.51466 * 27 26 25 29 29 H 1.09002 * 109.47087 * 270.04811 * 1 2 3 30 30 H 1.09003 * 109.46750 * 30.04859 * 1 2 3 31 31 H 1.08998 * 109.47125 * 150.04407 * 1 2 3 32 32 H 1.08996 * 109.46184 * 294.17694 * 7 6 5 33 33 H 1.08998 * 109.45670 * 54.14256 * 7 6 5 34 34 H 1.09004 * 109.50298 * 299.23907 * 8 7 6 35 35 H 1.09002 * 109.50331 * 179.12260 * 8 7 6 36 36 H 1.08998 * 109.52657 * 62.24441 * 9 8 7 37 37 H 0.97001 * 119.99764 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.50163 * 297.71139 * 18 9 8 39 39 H 1.09003 * 109.50263 * 177.59778 * 18 9 8 40 40 H 1.09000 * 109.46621 * 305.85851 * 19 6 5 41 41 H 1.09002 * 109.46062 * 65.82708 * 19 6 5 42 42 H 1.09002 * 109.47519 * 149.55765 * 21 20 5 43 43 H 1.09001 * 109.47537 * 29.55908 * 21 20 5 44 44 H 0.96997 * 119.99689 * 0.02562 * 24 22 21 45 45 H 1.09002 * 109.46852 * 59.99961 * 25 24 22 46 46 H 1.09001 * 109.46918 * 300.00891 * 25 24 22 47 47 H 1.09000 * 115.55163 * 29.33172 * 26 25 24 48 48 H 1.08994 * 117.50065 * 0.02562 * 27 26 25 49 49 H 1.08999 * 117.49436 * 145.01912 * 27 26 25 50 50 H 1.09007 * 117.50289 * 252.51194 * 28 27 26 51 51 H 1.09005 * 117.50098 * 107.49355 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5129 0.6889 0.0005 5 6 3.5945 -0.6208 0.0066 6 7 4.7580 -1.3736 0.0141 7 6 5.4897 -1.1990 1.2753 8 6 6.6869 -2.1516 1.3080 9 6 7.6037 -1.8523 0.1188 10 6 8.7536 -2.8264 0.1116 11 1 8.9008 -3.4817 -0.7341 12 6 9.6175 -2.8811 1.1848 13 7 9.4383 -2.0828 2.2145 14 14 11.0424 -4.0890 1.1762 15 1 11.9267 -3.8033 0.0180 16 1 11.8160 -3.9509 2.4363 17 1 10.5168 -5.4737 1.0679 18 6 6.8049 -1.9941 -1.1798 19 6 5.6041 -1.0461 -1.1405 20 7 2.3174 -1.1013 0.0007 21 6 1.9010 -2.5058 0.0015 22 6 1.7553 -2.9874 -1.4189 23 8 1.9780 -2.2320 -2.3413 24 7 1.3786 -4.2580 -1.6646 25 6 1.2365 -4.7260 -3.0455 26 6 0.8017 -6.1929 -3.0446 27 6 1.7651 -7.2157 -3.6501 28 6 0.4843 -6.8364 -4.3960 29 1 -0.3633 0.0009 1.0277 30 1 -0.3633 0.8896 -0.5146 31 1 -0.3633 -0.8904 -0.5131 32 1 5.8418 -0.1703 1.3514 33 1 4.8275 -1.4190 2.1127 34 1 6.3345 -3.1813 1.2458 35 1 7.2388 -2.0108 2.2374 36 1 7.9872 -0.8353 0.2013 37 1 10.0459 -2.1215 2.9696 38 1 6.4545 -3.0213 -1.2811 39 1 7.4410 -1.7407 -2.0279 40 1 5.0252 -1.1550 -2.0576 41 1 5.9558 -0.0181 -1.0530 42 1 0.9454 -2.6012 0.5172 43 1 2.6519 -3.1073 0.5139 44 1 1.2009 -4.8623 -0.9270 45 1 2.1917 -4.6301 -3.5617 46 1 0.4850 -4.1248 -3.5573 47 1 0.2082 -6.5068 -2.1859 48 1 2.7089 -6.8436 -4.0487 49 1 1.8059 -8.2027 -3.1896 50 1 -0.3177 -7.5740 -4.4262 51 1 0.5852 -6.2147 -5.2856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001395871949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:44 Heat of formation + Delta-G solvation = 73.259944 kcal Electronic energy + Delta-G solvation = -31399.314023 eV Core-core repulsion = 27335.936784 eV Total energy + Delta-G solvation = -4063.377239 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.82376 -39.98419 -38.27152 -37.91714 -34.85699 -34.51089 -34.10845 -32.05821 -30.81563 -29.91173 -29.26474 -27.19833 -26.57948 -25.55809 -22.81585 -22.69995 -22.17907 -21.55271 -21.45461 -20.88493 -20.21885 -18.53702 -17.79368 -17.42777 -16.66794 -16.36408 -16.08210 -15.77630 -15.60109 -15.03905 -14.54784 -14.50812 -14.27492 -14.15504 -13.80257 -13.65475 -13.36725 -13.03360 -12.89872 -12.72024 -12.53291 -12.45394 -12.30149 -11.94704 -11.88773 -11.55001 -11.38316 -11.02444 -11.01600 -10.88357 -10.75140 -10.64688 -10.59368 -10.35952 -10.26779 -10.11915 -9.78482 -9.53707 -9.41339 -9.05230 -8.80303 -8.67052 -8.31349 -8.25207 -5.98497 -4.04071 1.75244 2.23200 2.26381 2.84050 3.05892 3.31916 3.34889 3.36981 3.39417 4.06486 4.17969 4.27998 4.37938 4.38567 4.44181 4.46235 4.54552 4.75384 4.77182 4.94017 5.21359 5.25046 5.27305 5.31430 5.32100 5.39024 5.48884 5.53316 5.68729 5.69822 5.70270 5.81700 5.89992 6.03538 6.05207 6.14931 6.21264 6.26225 6.43548 6.57458 6.68791 6.81015 6.96356 7.04804 7.09831 7.37462 7.39973 7.67836 7.76087 7.84142 8.00380 8.09991 8.45127 8.95402 8.99234 9.60426 11.07879 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008042 B = 0.003379 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.775556 B = 8283.591189 C =11127.396142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.175 3.825 3 N -0.288 5.288 4 N -0.313 5.313 5 C 0.375 3.625 6 N -0.467 5.467 7 C 0.068 3.932 8 C -0.102 4.102 9 C 0.047 3.953 10 C -0.511 4.511 11 H 0.054 0.946 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.104 4.104 19 C 0.075 3.925 20 N -0.457 5.457 21 C 0.096 3.904 22 C 0.503 3.497 23 O -0.517 6.517 24 N -0.725 5.725 25 C 0.152 3.848 26 C -0.172 4.172 27 C -0.175 4.175 28 C -0.171 4.171 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.120 0.880 43 H 0.134 0.866 44 H 0.403 0.597 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.111 0.889 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.196 -8.851 -5.364 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.093 4.093 3 N -0.128 5.128 4 N -0.155 5.155 5 C 0.019 3.981 6 N -0.194 5.194 7 C -0.058 4.058 8 C -0.140 4.140 9 C 0.028 3.972 10 C -0.549 4.549 11 H 0.073 0.927 12 C -0.139 4.139 13 N -0.530 5.530 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.142 4.142 19 C -0.052 4.052 20 N -0.151 5.151 21 C -0.032 4.032 22 C 0.287 3.713 23 O -0.391 6.391 24 N -0.379 5.379 25 C 0.029 3.971 26 C -0.190 4.190 27 C -0.212 4.212 28 C -0.208 4.208 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.138 0.862 43 H 0.152 0.848 44 H 0.237 0.763 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.129 0.871 48 H 0.118 0.882 49 H 0.115 0.885 50 H 0.116 0.884 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.622 -7.270 -5.915 24.486 hybrid contribution 0.521 -1.752 0.447 1.882 sum -22.101 -9.022 -5.468 24.489 Atomic orbital electron populations 1.20133 0.84041 1.04260 1.03485 1.24677 0.96373 0.82492 1.05724 1.73981 0.96689 1.23936 1.18221 1.74681 1.11692 1.08465 1.20651 1.22668 0.85750 0.88439 1.01233 1.58948 1.02662 1.51275 1.06523 1.22417 0.95911 1.00854 0.86638 1.21726 0.92305 0.95823 1.04153 1.18708 0.92283 0.97339 0.88833 1.21133 1.10470 1.20176 1.03145 0.92741 1.24963 0.97588 0.95743 0.95654 1.69855 1.37751 1.38112 1.07303 0.86690 0.82596 0.81647 0.77225 1.20338 1.21367 1.20379 1.21717 0.93928 0.97741 1.00796 1.22176 0.93903 0.99338 0.89770 1.45762 1.06707 1.06559 1.56061 1.21542 1.04593 0.81298 0.95799 1.20664 0.77080 0.82238 0.91365 1.90801 1.47972 1.54732 1.45585 1.45823 1.70720 1.12175 1.09134 1.20895 1.01663 0.91861 0.82698 1.22433 1.04742 0.93318 0.98527 1.23121 0.94685 0.99730 1.03639 1.22963 0.99747 1.03273 0.94858 0.89806 0.88716 0.91051 0.93714 0.92695 0.93734 0.88214 0.95576 0.92955 0.92540 0.92379 0.92138 0.93549 0.86191 0.84833 0.76267 0.90975 0.91046 0.87120 0.88243 0.88453 0.88403 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.09 36.01 0.36 -0.17 16 2 C 0.17 2.59 8.07 -154.02 -1.24 1.34 16 3 N -0.29 -5.43 12.18 32.99 0.40 -5.02 16 4 N -0.31 -6.49 12.15 30.32 0.37 -6.13 16 5 C 0.38 7.02 6.44 -318.87 -2.05 4.97 16 6 N -0.47 -8.94 4.67 -174.56 -0.82 -9.75 16 7 C 0.07 1.37 5.40 -3.84 -0.02 1.35 16 8 C -0.10 -2.33 5.12 -26.66 -0.14 -2.46 16 9 C 0.05 1.15 2.16 -91.65 -0.20 0.96 16 10 C -0.51 -13.78 8.56 -34.44 -0.29 -14.07 16 11 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 12 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 13 N -0.89 -25.03 11.37 55.43 0.63 -24.40 16 14 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.10 -2.21 5.32 -26.65 -0.14 -2.35 16 19 C 0.07 1.51 5.34 -3.84 -0.02 1.49 16 20 N -0.46 -6.81 2.30 -115.37 -0.26 -7.07 16 21 C 0.10 0.96 6.37 -5.20 -0.03 0.93 16 22 C 0.50 5.75 7.90 -10.99 -0.09 5.66 16 23 O -0.52 -8.53 16.43 5.55 0.09 -8.44 16 24 N -0.72 -5.63 5.56 -60.29 -0.33 -5.97 16 25 C 0.15 1.22 5.96 -4.04 -0.02 1.20 16 26 C -0.17 -0.99 5.85 -90.62 -0.53 -1.52 16 27 C -0.17 -1.07 10.18 -26.73 -0.27 -1.34 16 28 C -0.17 -0.93 10.25 -26.73 -0.27 -1.20 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.52 7.93 -51.93 -0.41 0.11 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.10 2.54 6.17 -51.93 -0.32 2.22 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.12 0.66 7.89 -51.93 -0.41 0.25 16 43 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.40 1.82 8.40 -40.82 -0.34 1.47 16 45 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.11 0.48 8.04 -51.93 -0.42 0.06 16 48 H 0.10 0.69 8.03 -51.93 -0.42 0.27 16 49 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 416.26 15.07 6.27 6.27 Total: -1.00 -35.23 416.26 -12.34 -47.57 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.61 Total: 0.61 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -5.06 Total: -3.65 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.01 Total: -58.34 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.23 -12.34 -47.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395871949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.828 kcal (2) G-P(sol) polarization free energy of solvation -35.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds