Wall clock time and date at job start Wed Apr 1 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30295 * 126.34622 * 2 1 4 4 N 1.28528 * 110.05318 * 179.97438 * 3 2 1 5 5 C 1.31224 * 109.85838 * 359.73519 * 4 3 2 6 6 N 1.38584 * 126.47021 * 180.26020 * 5 4 3 7 7 C 1.46848 * 111.00070 * 66.71800 * 6 5 4 8 8 C 1.53033 * 109.52063 * 174.15689 * 7 6 5 9 9 C 1.53112 * 109.27847 * 59.18288 * 8 7 6 10 10 C 1.50705 * 109.52463 * 182.43728 * 9 8 7 11 11 H 1.07997 * 119.99720 * 119.67683 * 10 9 8 12 12 C 1.37869 * 119.99904 * 299.68457 * 10 9 8 13 13 N 1.31517 * 119.99993 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00108 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47462 * 59.99508 * 14 12 10 16 16 H 1.48503 * 109.47434 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.46891 * 299.99865 * 14 12 10 18 18 C 1.53124 * 109.15955 * 302.34046 * 9 8 7 19 19 C 1.46843 * 110.99971 * 302.50319 * 6 5 4 20 20 N 1.36447 * 107.05239 * 0.41041 * 5 4 3 21 21 C 1.46494 * 127.13569 * 179.87220 * 20 5 4 22 22 C 1.50693 * 109.47454 * 269.55793 * 21 20 5 23 23 O 1.21287 * 119.99984 * 0.02562 * 22 21 20 24 24 N 1.34779 * 120.00564 * 179.97438 * 22 21 20 25 25 C 1.46501 * 120.00415 * 179.97438 * 24 22 21 26 26 C 1.52998 * 109.47056 * 180.02562 * 25 24 22 27 27 C 1.53002 * 117.49584 * 243.61801 * 26 25 24 28 28 C 1.52993 * 60.00235 * 252.51466 * 27 26 25 29 29 H 1.09002 * 109.47087 * 270.04811 * 1 2 3 30 30 H 1.09003 * 109.46750 * 30.04859 * 1 2 3 31 31 H 1.08998 * 109.47125 * 150.04407 * 1 2 3 32 32 H 1.08996 * 109.46184 * 294.17694 * 7 6 5 33 33 H 1.08998 * 109.45670 * 54.14256 * 7 6 5 34 34 H 1.09004 * 109.50298 * 299.23907 * 8 7 6 35 35 H 1.09002 * 109.50331 * 179.12260 * 8 7 6 36 36 H 1.08998 * 109.52657 * 62.24441 * 9 8 7 37 37 H 0.97001 * 119.99764 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.50163 * 297.71139 * 18 9 8 39 39 H 1.09003 * 109.50263 * 177.59778 * 18 9 8 40 40 H 1.09000 * 109.46621 * 305.85851 * 19 6 5 41 41 H 1.09002 * 109.46062 * 65.82708 * 19 6 5 42 42 H 1.09002 * 109.47519 * 149.55765 * 21 20 5 43 43 H 1.09001 * 109.47537 * 29.55908 * 21 20 5 44 44 H 0.96997 * 119.99689 * 0.02562 * 24 22 21 45 45 H 1.09002 * 109.46852 * 59.99961 * 25 24 22 46 46 H 1.09001 * 109.46918 * 300.00891 * 25 24 22 47 47 H 1.09000 * 115.55163 * 29.33172 * 26 25 24 48 48 H 1.08994 * 117.50065 * 0.02562 * 27 26 25 49 49 H 1.08999 * 117.49436 * 145.01912 * 27 26 25 50 50 H 1.09007 * 117.50289 * 252.51194 * 28 27 26 51 51 H 1.09005 * 117.50098 * 107.49355 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5129 0.6889 0.0005 5 6 3.5945 -0.6208 0.0066 6 7 4.7580 -1.3736 0.0141 7 6 5.4897 -1.1990 1.2753 8 6 6.6869 -2.1516 1.3080 9 6 7.6037 -1.8523 0.1188 10 6 8.7536 -2.8264 0.1116 11 1 8.9008 -3.4817 -0.7341 12 6 9.6175 -2.8811 1.1848 13 7 9.4383 -2.0828 2.2145 14 14 11.0424 -4.0890 1.1762 15 1 11.9267 -3.8033 0.0180 16 1 11.8160 -3.9509 2.4363 17 1 10.5168 -5.4737 1.0679 18 6 6.8049 -1.9941 -1.1798 19 6 5.6041 -1.0461 -1.1405 20 7 2.3174 -1.1013 0.0007 21 6 1.9010 -2.5058 0.0015 22 6 1.7553 -2.9874 -1.4189 23 8 1.9780 -2.2320 -2.3413 24 7 1.3786 -4.2580 -1.6646 25 6 1.2365 -4.7260 -3.0455 26 6 0.8017 -6.1929 -3.0446 27 6 1.7651 -7.2157 -3.6501 28 6 0.4843 -6.8364 -4.3960 29 1 -0.3633 0.0009 1.0277 30 1 -0.3633 0.8896 -0.5146 31 1 -0.3633 -0.8904 -0.5131 32 1 5.8418 -0.1703 1.3514 33 1 4.8275 -1.4190 2.1127 34 1 6.3345 -3.1813 1.2458 35 1 7.2388 -2.0108 2.2374 36 1 7.9872 -0.8353 0.2013 37 1 10.0459 -2.1215 2.9696 38 1 6.4545 -3.0213 -1.2811 39 1 7.4410 -1.7407 -2.0279 40 1 5.0252 -1.1550 -2.0576 41 1 5.9558 -0.0181 -1.0530 42 1 0.9454 -2.6012 0.5172 43 1 2.6519 -3.1073 0.5139 44 1 1.2009 -4.8623 -0.9270 45 1 2.1917 -4.6301 -3.5617 46 1 0.4850 -4.1248 -3.5573 47 1 0.2082 -6.5068 -2.1859 48 1 2.7089 -6.8436 -4.0487 49 1 1.8059 -8.2027 -3.1896 50 1 -0.3177 -7.5740 -4.4262 51 1 0.5852 -6.2147 -5.2856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001395871949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:43 Heat of formation + Delta-G solvation = 52.004335 kcal Electronic energy + Delta-G solvation = -31400.235735 eV Core-core repulsion = 27335.936784 eV Total energy + Delta-G solvation = -4064.298952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.09009 -40.86038 -39.95208 -38.47813 -36.04667 -35.84892 -35.30096 -33.67095 -32.21676 -31.66684 -30.19495 -28.52767 -27.39692 -27.26383 -24.44735 -23.92687 -23.25529 -22.59096 -22.31312 -22.04906 -21.16804 -20.33701 -18.71623 -18.56696 -18.34707 -17.65834 -17.06477 -16.96932 -16.61109 -16.45630 -15.82605 -15.65253 -15.39542 -15.07487 -15.00150 -14.62487 -14.58308 -14.47397 -14.36531 -14.22962 -13.64896 -13.58817 -13.28929 -13.25720 -12.93269 -12.74784 -12.68858 -12.44227 -12.41265 -12.36813 -12.14306 -12.05081 -11.95108 -11.70601 -11.42181 -11.40910 -11.17023 -10.95172 -10.78165 -10.75604 -10.39903 -10.16024 -10.03905 -9.84615 -8.06670 -6.20195 0.55669 1.12136 1.40985 1.44607 1.45751 1.53313 1.73355 2.04741 2.45772 2.67108 2.87076 3.20779 3.40260 3.59335 3.60937 3.68703 3.86185 3.97696 3.99905 4.06300 4.09947 4.11650 4.25917 4.27619 4.35176 4.47938 4.53238 4.63967 4.65772 4.67809 4.68338 4.81752 4.82047 4.85315 4.85819 4.96943 4.97957 5.04655 5.15445 5.17329 5.17770 5.26140 5.38627 5.45943 5.56901 5.64097 5.72085 5.97726 6.12734 6.21717 6.38176 6.42085 6.89732 7.09047 7.47810 7.64466 8.98396 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008042 B = 0.003379 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.775556 B = 8283.591189 C =11127.396142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.196 3.804 3 N -0.335 5.335 4 N -0.354 5.354 5 C 0.354 3.646 6 N -0.453 5.453 7 C 0.082 3.918 8 C -0.087 4.087 9 C 0.045 3.955 10 C -0.531 4.531 11 H 0.054 0.946 12 C 0.015 3.985 13 N -0.917 5.917 14 Si 0.954 3.046 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.268 1.268 18 C -0.091 4.091 19 C 0.087 3.913 20 N -0.451 5.451 21 C 0.088 3.912 22 C 0.502 3.498 23 O -0.575 6.575 24 N -0.703 5.703 25 C 0.152 3.848 26 C -0.164 4.164 27 C -0.185 4.185 28 C -0.168 4.168 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.019 0.981 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.073 0.927 36 H -0.013 1.013 37 H 0.261 0.739 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.177 0.823 43 H 0.143 0.857 44 H 0.422 0.578 45 H 0.046 0.954 46 H 0.066 0.934 47 H 0.135 0.865 48 H 0.084 0.916 49 H 0.108 0.892 50 H 0.113 0.887 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.994 -11.528 -4.784 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.072 4.072 3 N -0.175 5.175 4 N -0.196 5.196 5 C -0.004 4.004 6 N -0.179 5.179 7 C -0.044 4.044 8 C -0.126 4.126 9 C 0.026 3.974 10 C -0.569 4.569 11 H 0.073 0.927 12 C -0.184 4.184 13 N -0.557 5.557 14 Si 0.780 3.220 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.193 1.193 18 C -0.129 4.129 19 C -0.040 4.040 20 N -0.144 5.144 21 C -0.037 4.037 22 C 0.287 3.713 23 O -0.454 6.454 24 N -0.357 5.357 25 C 0.029 3.971 26 C -0.182 4.182 27 C -0.222 4.222 28 C -0.205 4.205 29 H 0.135 0.865 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.038 0.962 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.005 0.995 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.194 0.806 43 H 0.161 0.839 44 H 0.261 0.739 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.152 0.848 48 H 0.102 0.898 49 H 0.126 0.874 50 H 0.132 0.868 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.460 -10.011 -5.320 27.869 hybrid contribution 1.294 -0.920 0.224 1.604 sum -24.165 -10.931 -5.096 27.008 Atomic orbital electron populations 1.20478 0.79640 1.05723 1.06014 1.25795 0.98372 0.81450 1.01617 1.73893 0.96469 1.26016 1.21130 1.74539 1.13388 1.10024 1.21680 1.22514 0.86612 0.88277 1.03017 1.58873 1.02627 1.51109 1.05301 1.22153 0.95516 0.98548 0.88217 1.21442 0.92670 0.96541 1.01932 1.18660 0.92763 0.94697 0.91271 1.21459 1.11537 1.20622 1.03294 0.92730 1.25719 1.00029 0.97363 0.95274 1.70002 1.38573 1.39338 1.07754 0.85678 0.79418 0.79793 0.77138 1.20092 1.21119 1.19268 1.21542 0.93938 0.98280 0.99126 1.21956 0.93668 0.97828 0.90591 1.45912 1.05101 1.08543 1.54892 1.22045 1.07637 0.78601 0.95442 1.20921 0.76343 0.82693 0.91298 1.90792 1.50894 1.56460 1.47248 1.45677 1.68853 1.11311 1.09837 1.20850 1.00282 0.93501 0.82497 1.22408 1.04719 0.91450 0.99631 1.23148 0.94404 1.00311 1.04325 1.23045 0.99699 1.03291 0.94511 0.86501 0.88313 0.88516 0.96220 0.90432 0.93281 0.90905 0.99454 0.92991 0.91894 0.92213 0.91883 0.95515 0.80572 0.83912 0.73948 0.93517 0.91544 0.84764 0.89773 0.87407 0.86826 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 10.09 71.24 0.72 -0.12 16 2 C 0.20 5.42 8.07 137.64 1.11 6.53 16 3 N -0.34 -12.64 12.18 -49.54 -0.60 -13.24 16 4 N -0.35 -15.07 12.15 -58.00 -0.70 -15.77 16 5 C 0.35 13.22 6.44 260.11 1.68 14.89 16 6 N -0.45 -17.45 4.67 -706.17 -3.30 -20.74 16 7 C 0.08 3.39 5.40 86.32 0.47 3.86 16 8 C -0.09 -4.09 5.12 30.64 0.16 -3.93 16 9 C 0.04 2.27 2.16 -11.46 -0.02 2.25 16 10 C -0.53 -29.10 8.56 25.60 0.22 -28.89 16 11 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 12 C 0.01 0.81 5.31 84.65 0.45 1.26 16 13 N -0.92 -52.65 11.37 21.44 0.24 -52.41 16 14 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 C -0.09 -3.96 5.32 30.65 0.16 -3.80 16 19 C 0.09 3.61 5.34 86.33 0.46 4.08 16 20 N -0.45 -12.60 2.30 -518.93 -1.19 -13.79 16 21 C 0.09 1.46 6.37 85.63 0.55 2.01 16 22 C 0.50 10.34 7.90 87.65 0.69 11.03 16 23 O -0.58 -18.60 16.43 -3.05 -0.05 -18.65 16 24 N -0.70 -8.99 5.56 -463.06 -2.57 -11.56 16 25 C 0.15 2.23 5.96 86.38 0.51 2.74 16 26 C -0.16 -1.48 5.85 -10.79 -0.06 -1.54 16 27 C -0.18 -1.98 10.18 30.59 0.31 -1.66 16 28 C -0.17 -1.50 10.25 30.59 0.31 -1.19 16 29 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 0.92 7.93 -2.39 -0.02 0.90 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 35 H 0.07 3.83 6.17 -2.39 -0.01 3.81 16 36 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 38 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.06 2.60 8.10 -2.39 -0.02 2.58 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 42 H 0.18 0.89 7.89 -2.39 -0.02 0.88 16 43 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.42 2.09 8.40 -92.71 -0.78 1.31 16 45 H 0.05 0.94 7.88 -2.39 -0.02 0.92 16 46 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.13 0.61 8.04 -2.39 -0.02 0.59 16 48 H 0.08 1.15 8.03 -2.39 -0.02 1.13 16 49 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 50 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 51 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -81.61 416.26 1.71 -79.91 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.15 Total: 13.55 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 7.71 Total: 7.53 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -8.13 Total: -127.51 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.05 Total: -18.65 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -81.61 1.71 -79.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395871949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.912 kcal (2) G-P(sol) polarization free energy of solvation -81.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds