Wall clock time and date at job start Wed Apr 1 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50695 * 109.47039 * 2 1 4 4 N 1.30172 * 126.80818 * 275.81999 * 3 2 1 5 5 O 1.20921 * 111.60603 * 180.25132 * 4 3 2 6 6 C 1.34036 * 111.56958 * 359.74677 * 5 4 3 7 7 C 1.50702 * 126.77712 * 179.97438 * 6 5 4 8 8 C 1.35457 * 106.44448 * 359.97438 * 6 5 4 9 9 C 1.50701 * 128.00350 * 179.97438 * 8 6 5 10 10 N 1.46494 * 109.46898 * 104.13852 * 9 8 6 11 11 C 1.36740 * 127.13510 * 276.31278 * 10 9 8 12 12 C 1.50700 * 126.34823 * 359.97271 * 11 10 9 13 13 C 1.53001 * 109.46821 * 277.59881 * 12 11 10 14 14 N 1.30296 * 107.30737 * 180.22935 * 11 10 9 15 15 N 1.28527 * 110.05369 * 359.77802 * 14 11 10 16 16 C 1.31224 * 109.85776 * 359.97438 * 15 14 11 17 17 N 1.38584 * 126.47015 * 179.97438 * 16 15 14 18 18 C 1.46895 * 110.99916 * 247.28730 * 17 16 15 19 19 C 1.46896 * 111.00278 * 11.24490 * 17 16 15 20 20 H 1.09005 * 109.46986 * 54.99478 * 19 17 16 21 21 C 1.52996 * 109.47177 * 294.99887 * 19 17 16 22 22 C 1.50697 * 109.47154 * 174.99581 * 19 17 16 23 23 H 1.08002 * 120.00232 * 5.82005 * 22 19 17 24 24 C 1.37879 * 120.00111 * 185.80936 * 22 19 17 25 25 N 1.31515 * 120.00067 * 198.12198 * 24 22 19 26 26 Si 1.86801 * 119.99776 * 18.12721 * 24 22 19 27 27 H 1.48502 * 109.47184 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.47156 * 299.99749 * 26 24 22 29 29 H 1.48501 * 109.47120 * 59.99563 * 26 24 22 30 30 H 1.09001 * 109.46810 * 177.80470 * 1 2 3 31 31 H 1.08998 * 109.46923 * 297.80410 * 1 2 3 32 32 H 1.09001 * 109.46884 * 57.80165 * 1 2 3 33 33 H 1.09000 * 109.46975 * 240.00419 * 2 1 3 34 34 H 1.08996 * 109.46962 * 120.00289 * 2 1 3 35 35 H 1.09004 * 109.46999 * 276.80442 * 7 6 5 36 36 H 1.08993 * 109.47150 * 36.81206 * 7 6 5 37 37 H 1.08999 * 109.46765 * 156.81207 * 7 6 5 38 38 H 1.08999 * 109.47171 * 344.13573 * 9 8 6 39 39 H 1.09004 * 109.46831 * 224.13703 * 9 8 6 40 40 H 1.09000 * 109.46995 * 37.59780 * 12 11 10 41 41 H 1.08998 * 109.47156 * 157.59894 * 12 11 10 42 42 H 1.09000 * 109.47254 * 299.99741 * 13 12 11 43 43 H 1.08998 * 109.47245 * 60.00068 * 13 12 11 44 44 H 1.09003 * 109.46770 * 179.97438 * 13 12 11 45 45 H 1.08995 * 109.47364 * 188.61718 * 18 17 16 46 46 H 1.09003 * 109.47346 * 308.62227 * 18 17 16 47 47 H 1.09000 * 109.46974 * 68.62313 * 18 17 16 48 48 H 1.09001 * 109.47238 * 173.71736 * 21 19 17 49 49 H 1.08995 * 109.47249 * 293.71808 * 21 19 17 50 50 H 1.09000 * 109.47174 * 53.72022 * 21 19 17 51 51 H 0.96992 * 119.99747 * 354.95701 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1927 2.1913 -1.0368 5 8 2.6166 3.2791 -0.7219 6 6 2.7921 3.3747 0.6035 7 6 3.3033 4.5726 1.3618 8 6 2.4193 2.1822 1.1267 9 6 2.4230 1.7621 2.5739 10 7 1.0517 1.7734 3.0891 11 6 0.3602 2.8496 3.5722 12 6 0.8691 4.2641 3.6774 13 6 1.6995 4.4137 4.9538 14 7 -0.8184 2.4243 3.9297 15 7 -0.9194 1.1633 3.7029 16 6 0.1984 0.7128 3.1836 17 7 0.4643 -0.5945 2.8083 18 6 1.4919 -1.1914 3.6716 19 6 -0.7620 -1.4033 2.8129 20 1 -1.5125 -0.9290 2.1805 21 6 -1.2953 -1.5128 4.2427 22 6 -0.4571 -2.7809 2.2836 23 1 0.5624 -3.0614 2.0632 24 6 -1.4795 -3.6835 2.0808 25 7 -1.2117 -4.9662 1.9684 26 14 -3.2450 -3.0843 1.9655 27 1 -4.1477 -4.2429 1.7465 28 1 -3.6181 -2.3974 3.2281 29 1 -3.3728 -2.1361 0.8298 30 1 -0.3633 -1.0269 -0.0394 31 1 -0.3633 0.4794 0.9090 32 1 -0.3633 0.5476 -0.8696 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 4.3930 4.5795 1.3383 36 1 2.9240 5.4840 0.8998 37 1 2.9625 4.5204 2.3958 38 1 3.0341 2.4553 3.1519 39 1 2.8350 0.7565 2.6592 40 1 1.4900 4.4923 2.8111 41 1 0.0247 4.9525 3.7107 42 1 1.0786 4.1855 5.8201 43 1 2.5440 3.7253 4.9206 44 1 2.0680 5.4367 5.0297 45 1 1.7917 -2.1573 3.2652 46 1 2.3581 -0.5311 3.7155 47 1 1.0886 -1.3288 4.6749 48 1 -2.2619 -2.0166 4.2324 49 1 -0.5937 -2.0852 4.8494 50 1 -1.4105 -0.5146 4.6650 51 1 -0.2906 -5.2699 1.9548 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411779552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:30 Heat of formation + Delta-G solvation = 160.534618 kcal Electronic energy + Delta-G solvation = -33885.798970 eV Core-core repulsion = 29826.206244 eV Total energy + Delta-G solvation = -4059.592725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.03994 -42.70012 -37.72021 -36.58121 -34.81016 -33.82839 -33.41422 -32.61052 -31.03314 -29.66741 -28.92101 -28.65841 -27.11742 -25.68162 -24.84813 -23.98222 -23.77386 -22.09842 -21.63772 -20.33454 -19.94991 -19.29118 -17.76016 -17.41553 -17.24637 -16.61851 -16.03188 -15.88016 -15.46829 -14.68532 -14.49648 -14.31363 -14.09975 -13.97996 -13.63018 -13.47449 -13.38344 -13.19235 -12.94746 -12.71350 -12.59565 -12.42087 -12.20514 -11.97817 -11.92728 -11.68639 -11.47530 -11.34340 -11.25263 -11.13780 -11.02779 -10.90359 -10.46580 -10.41697 -10.06980 -10.02723 -9.86935 -9.79093 -9.63646 -9.39025 -9.06343 -8.87682 -8.21483 -7.59346 -6.51789 -4.11709 1.20283 1.97885 2.10870 2.70227 2.93166 3.22562 3.43365 3.48549 3.62876 4.08775 4.24250 4.25419 4.32825 4.38123 4.47513 4.61361 4.73454 4.91529 4.95303 4.99193 5.03729 5.07921 5.19958 5.23491 5.31828 5.40926 5.45334 5.49060 5.59296 5.71756 5.77589 5.79776 5.82703 5.90557 5.92543 6.06354 6.15622 6.19116 6.33025 6.45510 6.57338 6.59304 6.70352 6.77453 6.84773 6.95221 7.17120 7.22508 7.55137 7.67768 8.16987 8.23921 8.34764 8.85715 9.19323 9.54345 10.90104 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.004650 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.130440 B = 6020.077385 C = 7239.042820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.042 4.042 3 C 0.059 3.941 4 N -0.368 5.368 5 O 0.096 5.904 6 C -0.018 4.018 7 C -0.087 4.087 8 C -0.228 4.228 9 C 0.193 3.807 10 N -0.480 5.480 11 C 0.158 3.842 12 C -0.042 4.042 13 C -0.149 4.149 14 N -0.286 5.286 15 N -0.321 5.321 16 C 0.384 3.616 17 N -0.440 5.440 18 C 0.032 3.968 19 C 0.207 3.793 20 H 0.042 0.958 21 C -0.194 4.194 22 C -0.593 4.593 23 H 0.066 0.934 24 C 0.041 3.959 25 N -0.901 5.901 26 Si 1.032 2.968 27 H -0.286 1.286 28 H -0.270 1.270 29 H -0.282 1.282 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.045 0.955 47 H 0.042 0.958 48 H 0.058 0.942 49 H 0.041 0.959 50 H 0.061 0.939 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.820 19.260 2.420 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.080 4.080 3 C -0.101 4.101 4 N -0.074 5.074 5 O 0.034 5.966 6 C -0.083 4.083 7 C -0.144 4.144 8 C -0.233 4.233 9 C 0.069 3.931 10 N -0.176 5.176 11 C -0.110 4.110 12 C -0.081 4.081 13 C -0.207 4.207 14 N -0.125 5.125 15 N -0.165 5.165 16 C 0.029 3.971 17 N -0.163 5.163 18 C -0.115 4.115 19 C 0.102 3.898 20 H 0.060 0.940 21 C -0.253 4.253 22 C -0.631 4.631 23 H 0.084 0.916 24 C -0.165 4.165 25 N -0.535 5.535 26 Si 0.861 3.139 27 H -0.212 1.212 28 H -0.196 1.196 29 H -0.208 1.208 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.821 18.553 1.002 21.016 hybrid contribution 2.697 0.258 0.910 2.858 sum 12.518 18.811 1.912 22.676 Atomic orbital electron populations 1.21680 0.92867 1.03791 1.00572 1.20058 0.97693 0.86295 1.03978 1.23791 0.98992 0.99730 0.87547 1.73868 1.17156 0.92554 1.23821 1.84832 1.61296 1.28153 1.22348 1.24227 1.01501 0.97742 0.84812 1.20634 1.02210 0.92661 0.98866 1.20963 1.10522 0.94706 0.97083 1.19880 0.80726 1.04626 0.87869 1.46195 1.13515 1.07996 1.49916 1.24467 0.90906 0.91797 1.03812 1.20139 1.00944 0.87687 0.99333 1.21786 0.99681 1.01809 0.97428 1.73952 1.14801 1.04795 1.18942 1.74806 1.20056 1.02839 1.18788 1.23255 0.87168 0.90008 0.96719 1.59442 1.14739 0.95343 1.46773 1.22455 0.92508 1.00591 0.95971 1.19659 0.84332 0.92365 0.93481 0.93979 1.22979 1.01539 1.01046 0.99766 1.21841 0.96105 0.96093 1.49035 0.91601 1.25520 1.04471 0.93372 0.93141 1.70890 1.22507 1.13795 1.46294 0.84215 0.76133 0.75717 0.77825 1.21178 1.19597 1.20781 0.89846 0.92172 0.94795 0.91001 0.88084 0.88997 0.89269 0.88596 0.88248 0.86906 0.89918 0.88453 0.91666 0.92920 0.91440 0.88746 0.93680 0.93972 0.92283 0.94040 0.92089 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.34 37.16 0.31 -2.16 16 2 C -0.04 -0.69 6.23 -27.88 -0.17 -0.87 16 3 C 0.06 0.90 6.58 -82.10 -0.54 0.36 16 4 N -0.37 -5.79 12.07 33.42 0.40 -5.38 16 5 O 0.10 1.27 11.20 17.19 0.19 1.46 16 6 C -0.02 -0.18 7.42 -35.30 -0.26 -0.44 16 7 C -0.09 -0.46 9.48 36.01 0.34 -0.12 16 8 C -0.23 -2.83 5.90 -104.42 -0.62 -3.44 16 9 C 0.19 2.15 6.03 -5.20 -0.03 2.12 16 10 N -0.48 -7.03 2.79 -115.37 -0.32 -7.35 16 11 C 0.16 2.31 7.32 -154.01 -1.13 1.18 16 12 C -0.04 -0.39 6.11 -27.88 -0.17 -0.56 16 13 C -0.15 -1.07 9.84 37.16 0.37 -0.70 16 14 N -0.29 -5.39 12.18 32.99 0.40 -4.99 16 15 N -0.32 -6.69 9.03 30.32 0.27 -6.41 16 16 C 0.38 7.06 4.87 -318.86 -1.55 5.51 16 17 N -0.44 -8.30 1.72 -176.09 -0.30 -8.61 16 18 C 0.03 0.53 8.69 60.06 0.52 1.05 16 19 C 0.21 4.69 0.95 -68.87 -0.07 4.63 16 20 H 0.04 1.05 6.08 -51.93 -0.32 0.73 16 21 C -0.19 -4.39 8.03 37.16 0.30 -4.09 16 22 C -0.59 -14.99 8.36 -34.44 -0.29 -15.28 16 23 H 0.07 1.74 6.79 -52.49 -0.36 1.39 16 24 C 0.04 1.12 5.34 -17.82 -0.10 1.03 16 25 N -0.90 -26.23 13.70 55.43 0.76 -25.47 16 26 Si 1.03 25.05 26.46 -169.99 -4.50 20.55 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.27 -6.27 5.50 56.52 0.31 -5.96 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 30 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.06 1.23 4.73 -51.93 -0.25 0.99 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.66 6.61 -51.93 -0.34 1.32 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.42 4.61 -51.93 -0.24 0.18 16 38 H 0.10 0.76 6.63 -51.93 -0.34 0.41 16 39 H 0.11 1.26 5.58 -51.93 -0.29 0.97 16 40 H 0.08 0.62 4.35 -51.93 -0.23 0.39 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.35 7.51 -51.93 -0.39 -0.04 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 1.67 6.59 -51.93 -0.34 1.33 16 46 H 0.04 0.60 5.61 -51.93 -0.29 0.31 16 47 H 0.04 0.74 6.18 -51.93 -0.32 0.42 16 48 H 0.06 1.40 4.87 -51.93 -0.25 1.14 16 49 H 0.04 0.91 6.64 -51.93 -0.34 0.57 16 50 H 0.06 1.36 5.39 -51.93 -0.28 1.08 16 51 H 0.27 7.70 8.73 -40.82 -0.36 7.35 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -32.34 380.38 -7.65 -39.99 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.21 Total: 2.27 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -3.09 Total: -11.78 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 1.21 Total: -58.22 kcal Atomic # 8 Polarization: 1.27 SS G_CDS: 0.19 Total: 1.46 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.50 Total: 20.55 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.34 -7.65 -39.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411779552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.524 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds