Wall clock time and date at job start Wed Apr 1 2020 06:16:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.50695 * 109.47039 * 2 1
4 4 N 1.30172 * 126.80818 * 275.81999 * 3 2 1
5 5 O 1.20921 * 111.60603 * 180.25132 * 4 3 2
6 6 C 1.34036 * 111.56958 * 359.74677 * 5 4 3
7 7 C 1.50702 * 126.77712 * 179.97438 * 6 5 4
8 8 C 1.35457 * 106.44448 * 359.97438 * 6 5 4
9 9 C 1.50701 * 128.00350 * 179.97438 * 8 6 5
10 10 N 1.46494 * 109.46898 * 104.13852 * 9 8 6
11 11 C 1.36740 * 127.13510 * 276.31278 * 10 9 8
12 12 C 1.50700 * 126.34823 * 359.97271 * 11 10 9
13 13 C 1.53001 * 109.46821 * 277.59881 * 12 11 10
14 14 N 1.30296 * 107.30737 * 180.22935 * 11 10 9
15 15 N 1.28527 * 110.05369 * 359.77802 * 14 11 10
16 16 C 1.31224 * 109.85776 * 359.97438 * 15 14 11
17 17 N 1.38584 * 126.47015 * 179.97438 * 16 15 14
18 18 C 1.46895 * 110.99916 * 247.28730 * 17 16 15
19 19 C 1.46896 * 111.00278 * 11.24490 * 17 16 15
20 20 H 1.09005 * 109.46986 * 54.99478 * 19 17 16
21 21 C 1.52996 * 109.47177 * 294.99887 * 19 17 16
22 22 C 1.50697 * 109.47154 * 174.99581 * 19 17 16
23 23 H 1.08002 * 120.00232 * 5.82005 * 22 19 17
24 24 C 1.37879 * 120.00111 * 185.80936 * 22 19 17
25 25 N 1.31515 * 120.00067 * 198.12198 * 24 22 19
26 26 Si 1.86801 * 119.99776 * 18.12721 * 24 22 19
27 27 H 1.48502 * 109.47184 * 179.97438 * 26 24 22
28 28 H 1.48498 * 109.47156 * 299.99749 * 26 24 22
29 29 H 1.48501 * 109.47120 * 59.99563 * 26 24 22
30 30 H 1.09001 * 109.46810 * 177.80470 * 1 2 3
31 31 H 1.08998 * 109.46923 * 297.80410 * 1 2 3
32 32 H 1.09001 * 109.46884 * 57.80165 * 1 2 3
33 33 H 1.09000 * 109.46975 * 240.00419 * 2 1 3
34 34 H 1.08996 * 109.46962 * 120.00289 * 2 1 3
35 35 H 1.09004 * 109.46999 * 276.80442 * 7 6 5
36 36 H 1.08993 * 109.47150 * 36.81206 * 7 6 5
37 37 H 1.08999 * 109.46765 * 156.81207 * 7 6 5
38 38 H 1.08999 * 109.47171 * 344.13573 * 9 8 6
39 39 H 1.09004 * 109.46831 * 224.13703 * 9 8 6
40 40 H 1.09000 * 109.46995 * 37.59780 * 12 11 10
41 41 H 1.08998 * 109.47156 * 157.59894 * 12 11 10
42 42 H 1.09000 * 109.47254 * 299.99741 * 13 12 11
43 43 H 1.08998 * 109.47245 * 60.00068 * 13 12 11
44 44 H 1.09003 * 109.46770 * 179.97438 * 13 12 11
45 45 H 1.08995 * 109.47364 * 188.61718 * 18 17 16
46 46 H 1.09003 * 109.47346 * 308.62227 * 18 17 16
47 47 H 1.09000 * 109.46974 * 68.62313 * 18 17 16
48 48 H 1.09001 * 109.47238 * 173.71736 * 21 19 17
49 49 H 1.08995 * 109.47249 * 293.71808 * 21 19 17
50 50 H 1.09000 * 109.47174 * 53.72022 * 21 19 17
51 51 H 0.96992 * 119.99747 * 354.95701 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.1927 2.1913 -1.0368
5 8 2.6166 3.2791 -0.7219
6 6 2.7921 3.3747 0.6035
7 6 3.3033 4.5726 1.3618
8 6 2.4193 2.1822 1.1267
9 6 2.4230 1.7621 2.5739
10 7 1.0517 1.7734 3.0891
11 6 0.3602 2.8496 3.5722
12 6 0.8691 4.2641 3.6774
13 6 1.6995 4.4137 4.9538
14 7 -0.8184 2.4243 3.9297
15 7 -0.9194 1.1633 3.7029
16 6 0.1984 0.7128 3.1836
17 7 0.4643 -0.5945 2.8083
18 6 1.4919 -1.1914 3.6716
19 6 -0.7620 -1.4033 2.8129
20 1 -1.5125 -0.9290 2.1805
21 6 -1.2953 -1.5128 4.2427
22 6 -0.4571 -2.7809 2.2836
23 1 0.5624 -3.0614 2.0632
24 6 -1.4795 -3.6835 2.0808
25 7 -1.2117 -4.9662 1.9684
26 14 -3.2450 -3.0843 1.9655
27 1 -4.1477 -4.2429 1.7465
28 1 -3.6181 -2.3974 3.2281
29 1 -3.3728 -2.1361 0.8298
30 1 -0.3633 -1.0269 -0.0394
31 1 -0.3633 0.4794 0.9090
32 1 -0.3633 0.5476 -0.8696
33 1 1.8934 -0.5138 -0.8900
34 1 1.8934 -0.5139 0.8899
35 1 4.3930 4.5795 1.3383
36 1 2.9240 5.4840 0.8998
37 1 2.9625 4.5204 2.3958
38 1 3.0341 2.4553 3.1519
39 1 2.8350 0.7565 2.6592
40 1 1.4900 4.4923 2.8111
41 1 0.0247 4.9525 3.7107
42 1 1.0786 4.1855 5.8201
43 1 2.5440 3.7253 4.9206
44 1 2.0680 5.4367 5.0297
45 1 1.7917 -2.1573 3.2652
46 1 2.3581 -0.5311 3.7155
47 1 1.0886 -1.3288 4.6749
48 1 -2.2619 -2.0166 4.2324
49 1 -0.5937 -2.0852 4.8494
50 1 -1.4105 -0.5146 4.6650
51 1 -0.2906 -5.2699 1.9548
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001411779552.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:16:30
Heat of formation + Delta-G solvation = 160.534618 kcal
Electronic energy + Delta-G solvation = -33885.798970 eV
Core-core repulsion = 29826.206244 eV
Total energy + Delta-G solvation = -4059.592725 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-45.03994 -42.70012 -37.72021 -36.58121 -34.81016 -33.82839 -33.41422 -32.61052
-31.03314 -29.66741 -28.92101 -28.65841 -27.11742 -25.68162 -24.84813 -23.98222
-23.77386 -22.09842 -21.63772 -20.33454 -19.94991 -19.29118 -17.76016 -17.41553
-17.24637 -16.61851 -16.03188 -15.88016 -15.46829 -14.68532 -14.49648 -14.31363
-14.09975 -13.97996 -13.63018 -13.47449 -13.38344 -13.19235 -12.94746 -12.71350
-12.59565 -12.42087 -12.20514 -11.97817 -11.92728 -11.68639 -11.47530 -11.34340
-11.25263 -11.13780 -11.02779 -10.90359 -10.46580 -10.41697 -10.06980 -10.02723
-9.86935 -9.79093 -9.63646 -9.39025 -9.06343 -8.87682 -8.21483 -7.59346
-6.51789 -4.11709 1.20283 1.97885 2.10870 2.70227 2.93166 3.22562
3.43365 3.48549 3.62876 4.08775 4.24250 4.25419 4.32825 4.38123
4.47513 4.61361 4.73454 4.91529 4.95303 4.99193 5.03729 5.07921
5.19958 5.23491 5.31828 5.40926 5.45334 5.49060 5.59296 5.71756
5.77589 5.79776 5.82703 5.90557 5.92543 6.06354 6.15622 6.19116
6.33025 6.45510 6.57338 6.59304 6.70352 6.77453 6.84773 6.95221
7.17120 7.22508 7.55137 7.67768 8.16987 8.23921 8.34764 8.85715
9.19323 9.54345 10.90104
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.012747 B = 0.004650 C = 0.003867
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2196.130440 B = 6020.077385 C = 7239.042820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.042 4.042
3 C 0.059 3.941
4 N -0.368 5.368
5 O 0.096 5.904
6 C -0.018 4.018
7 C -0.087 4.087
8 C -0.228 4.228
9 C 0.193 3.807
10 N -0.480 5.480
11 C 0.158 3.842
12 C -0.042 4.042
13 C -0.149 4.149
14 N -0.286 5.286
15 N -0.321 5.321
16 C 0.384 3.616
17 N -0.440 5.440
18 C 0.032 3.968
19 C 0.207 3.793
20 H 0.042 0.958
21 C -0.194 4.194
22 C -0.593 4.593
23 H 0.066 0.934
24 C 0.041 3.959
25 N -0.901 5.901
26 Si 1.032 2.968
27 H -0.286 1.286
28 H -0.270 1.270
29 H -0.282 1.282
30 H 0.083 0.917
31 H 0.059 0.941
32 H 0.033 0.967
33 H 0.071 0.929
34 H 0.101 0.899
35 H 0.092 0.908
36 H 0.089 0.911
37 H 0.096 0.904
38 H 0.099 0.901
39 H 0.113 0.887
40 H 0.083 0.917
41 H 0.097 0.903
42 H 0.064 0.936
43 H 0.052 0.948
44 H 0.067 0.933
45 H 0.094 0.906
46 H 0.045 0.955
47 H 0.042 0.958
48 H 0.058 0.942
49 H 0.041 0.959
50 H 0.061 0.939
51 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.820 19.260 2.420 23.262
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.080 4.080
3 C -0.101 4.101
4 N -0.074 5.074
5 O 0.034 5.966
6 C -0.083 4.083
7 C -0.144 4.144
8 C -0.233 4.233
9 C 0.069 3.931
10 N -0.176 5.176
11 C -0.110 4.110
12 C -0.081 4.081
13 C -0.207 4.207
14 N -0.125 5.125
15 N -0.165 5.165
16 C 0.029 3.971
17 N -0.163 5.163
18 C -0.115 4.115
19 C 0.102 3.898
20 H 0.060 0.940
21 C -0.253 4.253
22 C -0.631 4.631
23 H 0.084 0.916
24 C -0.165 4.165
25 N -0.535 5.535
26 Si 0.861 3.139
27 H -0.212 1.212
28 H -0.196 1.196
29 H -0.208 1.208
30 H 0.102 0.898
31 H 0.078 0.922
32 H 0.052 0.948
33 H 0.090 0.910
34 H 0.119 0.881
35 H 0.110 0.890
36 H 0.107 0.893
37 H 0.114 0.886
38 H 0.118 0.882
39 H 0.131 0.869
40 H 0.101 0.899
41 H 0.115 0.885
42 H 0.083 0.917
43 H 0.071 0.929
44 H 0.086 0.914
45 H 0.113 0.887
46 H 0.063 0.937
47 H 0.060 0.940
48 H 0.077 0.923
49 H 0.060 0.940
50 H 0.079 0.921
51 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 9.821 18.553 1.002 21.016
hybrid contribution 2.697 0.258 0.910 2.858
sum 12.518 18.811 1.912 22.676
Atomic orbital electron populations
1.21680 0.92867 1.03791 1.00572 1.20058 0.97693 0.86295 1.03978
1.23791 0.98992 0.99730 0.87547 1.73868 1.17156 0.92554 1.23821
1.84832 1.61296 1.28153 1.22348 1.24227 1.01501 0.97742 0.84812
1.20634 1.02210 0.92661 0.98866 1.20963 1.10522 0.94706 0.97083
1.19880 0.80726 1.04626 0.87869 1.46195 1.13515 1.07996 1.49916
1.24467 0.90906 0.91797 1.03812 1.20139 1.00944 0.87687 0.99333
1.21786 0.99681 1.01809 0.97428 1.73952 1.14801 1.04795 1.18942
1.74806 1.20056 1.02839 1.18788 1.23255 0.87168 0.90008 0.96719
1.59442 1.14739 0.95343 1.46773 1.22455 0.92508 1.00591 0.95971
1.19659 0.84332 0.92365 0.93481 0.93979 1.22979 1.01539 1.01046
0.99766 1.21841 0.96105 0.96093 1.49035 0.91601 1.25520 1.04471
0.93372 0.93141 1.70890 1.22507 1.13795 1.46294 0.84215 0.76133
0.75717 0.77825 1.21178 1.19597 1.20781 0.89846 0.92172 0.94795
0.91001 0.88084 0.88997 0.89269 0.88596 0.88248 0.86906 0.89918
0.88453 0.91666 0.92920 0.91440 0.88746 0.93680 0.93972 0.92283
0.94040 0.92089 0.92211
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.47 8.34 37.16 0.31 -2.16 16
2 C -0.04 -0.69 6.23 -27.88 -0.17 -0.87 16
3 C 0.06 0.90 6.58 -82.10 -0.54 0.36 16
4 N -0.37 -5.79 12.07 33.42 0.40 -5.38 16
5 O 0.10 1.27 11.20 17.19 0.19 1.46 16
6 C -0.02 -0.18 7.42 -35.30 -0.26 -0.44 16
7 C -0.09 -0.46 9.48 36.01 0.34 -0.12 16
8 C -0.23 -2.83 5.90 -104.42 -0.62 -3.44 16
9 C 0.19 2.15 6.03 -5.20 -0.03 2.12 16
10 N -0.48 -7.03 2.79 -115.37 -0.32 -7.35 16
11 C 0.16 2.31 7.32 -154.01 -1.13 1.18 16
12 C -0.04 -0.39 6.11 -27.88 -0.17 -0.56 16
13 C -0.15 -1.07 9.84 37.16 0.37 -0.70 16
14 N -0.29 -5.39 12.18 32.99 0.40 -4.99 16
15 N -0.32 -6.69 9.03 30.32 0.27 -6.41 16
16 C 0.38 7.06 4.87 -318.86 -1.55 5.51 16
17 N -0.44 -8.30 1.72 -176.09 -0.30 -8.61 16
18 C 0.03 0.53 8.69 60.06 0.52 1.05 16
19 C 0.21 4.69 0.95 -68.87 -0.07 4.63 16
20 H 0.04 1.05 6.08 -51.93 -0.32 0.73 16
21 C -0.19 -4.39 8.03 37.16 0.30 -4.09 16
22 C -0.59 -14.99 8.36 -34.44 -0.29 -15.28 16
23 H 0.07 1.74 6.79 -52.49 -0.36 1.39 16
24 C 0.04 1.12 5.34 -17.82 -0.10 1.03 16
25 N -0.90 -26.23 13.70 55.43 0.76 -25.47 16
26 Si 1.03 25.05 26.46 -169.99 -4.50 20.55 16
27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
28 H -0.27 -6.27 5.50 56.52 0.31 -5.96 16
29 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16
30 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16
31 H 0.06 1.23 4.73 -51.93 -0.25 0.99 16
32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16
33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
34 H 0.10 1.66 6.61 -51.93 -0.34 1.32 16
35 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16
36 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16
37 H 0.10 0.42 4.61 -51.93 -0.24 0.18 16
38 H 0.10 0.76 6.63 -51.93 -0.34 0.41 16
39 H 0.11 1.26 5.58 -51.93 -0.29 0.97 16
40 H 0.08 0.62 4.35 -51.93 -0.23 0.39 16
41 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16
42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
43 H 0.05 0.35 7.51 -51.93 -0.39 -0.04 16
44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
45 H 0.09 1.67 6.59 -51.93 -0.34 1.33 16
46 H 0.04 0.60 5.61 -51.93 -0.29 0.31 16
47 H 0.04 0.74 6.18 -51.93 -0.32 0.42 16
48 H 0.06 1.40 4.87 -51.93 -0.25 1.14 16
49 H 0.04 0.91 6.64 -51.93 -0.34 0.57 16
50 H 0.06 1.36 5.39 -51.93 -0.28 1.08 16
51 H 0.27 7.70 8.73 -40.82 -0.36 7.35 16
LS Contribution 380.38 15.07 5.73 5.73
Total: -1.00 -32.34 380.38 -7.65 -39.99
By element:
Atomic # 1 Polarization: 9.47 SS G_CDS: -7.21 Total: 2.27 kcal
Atomic # 6 Polarization: -8.69 SS G_CDS: -3.09 Total: -11.78 kcal
Atomic # 7 Polarization: -59.43 SS G_CDS: 1.21 Total: -58.22 kcal
Atomic # 8 Polarization: 1.27 SS G_CDS: 0.19 Total: 1.46 kcal
Atomic # 14 Polarization: 25.05 SS G_CDS: -4.50 Total: 20.55 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -32.34 -7.65 -39.99 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001411779552.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 200.524 kcal
(2) G-P(sol) polarization free energy of solvation -32.336 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.188 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal
(6) G-S(sol) free energy of system = (1) + (5) 160.535 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds