Wall clock time and date at job start Wed Apr 1 2020 06:11:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 N 1.30297 * 126.34496 * 2 1
4 4 N 1.28537 * 110.05285 * 179.68994 * 3 2 1
5 5 C 1.31217 * 109.85723 * 0.45277 * 4 3 2
6 6 N 1.38578 * 126.47226 * 179.81699 * 5 4 3
7 7 C 1.46846 * 110.99742 * 60.97981 * 6 5 4
8 8 C 1.53035 * 109.52612 * 174.15945 * 7 6 5
9 9 C 1.53118 * 109.27548 * 59.17762 * 8 7 6
10 10 C 1.50705 * 109.52269 * 182.44113 * 9 8 7
11 11 H 1.07999 * 119.99855 * 119.68419 * 10 9 8
12 12 C 1.37873 * 120.00134 * 299.68515 * 10 9 8
13 13 N 1.31514 * 119.99861 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 120.00198 * 179.97438 * 12 10 9
15 15 H 1.48503 * 109.46964 * 59.99707 * 14 12 10
16 16 H 1.48493 * 109.47287 * 179.97438 * 14 12 10
17 17 H 1.48502 * 109.46854 * 300.00204 * 14 12 10
18 18 C 1.53121 * 109.16301 * 302.34554 * 9 8 7
19 19 C 1.46843 * 110.99982 * 296.77187 * 6 5 4
20 20 N 1.36451 * 107.05369 * 359.56085 * 5 4 3
21 21 C 1.46505 * 127.13619 * 180.24313 * 20 5 4
22 22 C 1.52999 * 109.47360 * 91.66038 * 21 20 5
23 23 N 1.46495 * 109.47127 * 183.92742 * 22 21 20
24 24 C 1.34776 * 119.99986 * 179.97438 * 23 22 21
25 25 O 1.21274 * 119.99788 * 359.97438 * 24 23 22
26 26 C 1.50700 * 120.00084 * 179.97438 * 24 23 22
27 27 C 1.53005 * 117.50073 * 248.62601 * 26 24 23
28 28 C 1.52996 * 117.50164 * 180.02562 * 26 24 23
29 29 H 1.09000 * 109.47232 * 270.04446 * 1 2 3
30 30 H 1.09004 * 109.47516 * 30.03869 * 1 2 3
31 31 H 1.08997 * 109.47549 * 150.03967 * 1 2 3
32 32 H 1.09006 * 109.46171 * 294.17804 * 7 6 5
33 33 H 1.09004 * 109.46141 * 54.14278 * 7 6 5
34 34 H 1.09003 * 109.49952 * 299.24297 * 8 7 6
35 35 H 1.09000 * 109.50716 * 179.12243 * 8 7 6
36 36 H 1.08997 * 109.52387 * 62.25198 * 9 8 7
37 37 H 0.96996 * 119.99728 * 180.02562 * 13 12 10
38 38 H 1.08996 * 109.50397 * 297.71844 * 18 9 8
39 39 H 1.09000 * 109.50182 * 177.59092 * 18 9 8
40 40 H 1.08995 * 109.46380 * 305.85050 * 19 6 5
41 41 H 1.08999 * 109.46260 * 65.82430 * 19 6 5
42 42 H 1.08997 * 109.47093 * 211.66417 * 21 20 5
43 43 H 1.09001 * 109.46923 * 331.65943 * 21 20 5
44 44 H 1.09005 * 109.46710 * 303.92188 * 22 21 20
45 45 H 1.09002 * 109.47029 * 63.92294 * 22 21 20
46 46 H 0.97002 * 120.00319 * 359.97438 * 23 22 21
47 47 H 1.09007 * 115.54776 * 34.32821 * 26 24 23
48 48 H 1.08994 * 117.49629 * 359.97438 * 27 26 24
49 49 H 1.08992 * 117.49927 * 145.02357 * 27 26 24
50 50 H 1.08998 * 117.50333 * 214.98394 * 28 26 24
51 51 H 1.09003 * 117.49613 * 359.97438 * 28 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2791 1.0495 0.0000
4 7 3.5129 0.6889 0.0065
5 6 3.5945 -0.6207 0.0013
6 7 4.7580 -1.3735 0.0021
7 6 5.5570 -1.1060 1.2048
8 6 6.7560 -2.0562 1.2441
9 6 7.6061 -1.8495 -0.0126
10 6 8.7556 -2.8240 -0.0089
11 1 8.8578 -3.5416 -0.8096
12 6 9.6768 -2.7996 1.0166
13 7 9.5521 -1.9262 1.9919
14 14 11.1013 -4.0080 1.0216
15 1 11.9206 -3.8124 -0.2014
16 1 11.9429 -3.7763 2.2229
17 1 10.5731 -5.3957 1.0468
18 6 6.7379 -2.0870 -1.2513
19 6 5.5394 -1.1359 -1.2182
20 7 2.3174 -1.1013 0.0008
21 6 1.9009 -2.5059 0.0008
22 6 1.7153 -2.9829 1.4426
23 7 1.3903 -4.4114 1.4463
24 6 1.1826 -5.0522 2.6136
25 8 1.2653 -4.4463 3.6610
26 6 0.8478 -6.5215 2.6175
27 6 -0.5644 -6.9232 3.0482
28 6 0.6229 -7.1913 3.9745
29 1 -0.3634 0.0008 1.0277
30 1 -0.3634 0.8896 -0.5144
31 1 -0.3634 -0.8903 -0.5132
32 1 5.9109 -0.0753 1.1838
33 1 4.9418 -1.2607 2.0913
34 1 6.4026 -3.0867 1.2789
35 1 7.3574 -1.8469 2.1287
36 1 7.9916 -0.8301 -0.0280
37 1 10.2004 -1.9088 2.7132
38 1 6.3843 -3.1180 -1.2556
39 1 7.3264 -1.8996 -2.1495
40 1 4.9116 -1.3123 -2.0916
41 1 5.8934 -0.1050 -1.2277
42 1 0.9593 -2.6056 -0.5391
43 1 2.6651 -3.1113 -0.4867
44 1 2.6368 -2.8185 2.0011
45 1 0.9034 -2.4243 1.9084
46 1 1.3246 -4.8960 0.6086
47 1 1.3237 -7.1141 1.8361
48 1 -1.2510 -6.1247 3.3291
49 1 -1.0177 -7.7802 2.5502
50 1 0.9508 -8.2248 4.0863
51 1 0.7175 -6.5693 4.8646
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001434606835.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:11:34
Heat of formation + Delta-G solvation = 69.647750 kcal
Electronic energy + Delta-G solvation = -31149.048617 eV
Core-core repulsion = 27085.514741 eV
Total energy + Delta-G solvation = -4063.533876 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.92740 -40.22366 -38.34945 -36.99302 -35.99930 -34.26295 -34.13714 -32.12491
-30.88587 -29.98840 -29.53768 -27.26518 -25.67968 -25.31409 -23.14746 -22.77895
-22.68219 -22.23711 -21.05667 -20.89113 -20.18841 -18.59098 -17.92454 -17.21710
-16.72153 -16.30246 -15.99973 -15.89923 -15.75703 -15.17434 -14.57080 -14.53354
-14.42297 -14.22874 -13.79225 -13.44455 -13.22063 -13.02792 -12.89937 -12.79029
-12.70055 -12.52528 -12.37891 -12.01663 -11.91223 -11.62720 -11.47135 -11.04649
-11.01353 -10.90031 -10.89545 -10.62819 -10.44535 -10.35004 -10.29520 -10.15738
-10.07120 -9.56577 -9.45917 -9.11267 -8.86189 -8.76101 -8.34547 -8.32729
-5.99596 -4.05669 1.70979 2.07635 2.20320 2.88912 2.92621 3.31415
3.36978 3.38579 3.48805 4.00385 4.22544 4.27163 4.28335 4.37348
4.43208 4.44547 4.50630 4.72091 4.78012 4.89030 5.19753 5.20210
5.21375 5.30400 5.30724 5.37826 5.43040 5.56073 5.57910 5.60981
5.72926 5.76887 5.84687 5.93793 5.98998 6.06770 6.13809 6.18914
6.42455 6.48861 6.62904 6.73643 6.89545 7.02618 7.10482 7.32014
7.37199 7.60206 7.73566 7.91032 7.97353 8.08304 8.42594 8.83489
8.97497 9.59147 11.06745
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.007409 B = 0.003396 C = 0.002480
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3778.085749 B = 8243.984098 C =11286.501278
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 C 0.167 3.833
3 N -0.287 5.287
4 N -0.311 5.311
5 C 0.366 3.634
6 N -0.466 5.466
7 C 0.070 3.930
8 C -0.102 4.102
9 C 0.047 3.953
10 C -0.513 4.513
11 H 0.054 0.946
12 C 0.062 3.938
13 N -0.890 5.890
14 Si 0.890 3.110
15 H -0.278 1.278
16 H -0.288 1.288
17 H -0.278 1.278
18 C -0.104 4.104
19 C 0.072 3.928
20 N -0.468 5.468
21 C 0.105 3.895
22 C 0.109 3.891
23 N -0.723 5.723
24 C 0.545 3.455
25 O -0.534 6.534
26 C -0.195 4.195
27 C -0.153 4.153
28 C -0.147 4.147
29 H 0.084 0.916
30 H 0.094 0.906
31 H 0.074 0.926
32 H 0.046 0.954
33 H 0.055 0.945
34 H 0.044 0.956
35 H 0.100 0.900
36 H 0.026 0.974
37 H 0.261 0.739
38 H 0.057 0.943
39 H 0.058 0.942
40 H 0.057 0.943
41 H 0.047 0.953
42 H 0.097 0.903
43 H 0.111 0.889
44 H 0.081 0.919
45 H 0.072 0.928
46 H 0.403 0.597
47 H 0.126 0.874
48 H 0.099 0.901
49 H 0.105 0.895
50 H 0.104 0.896
51 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.417 -8.130 -3.520 25.037
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.100 4.100
3 N -0.128 5.128
4 N -0.154 5.154
5 C 0.010 3.990
6 N -0.193 5.193
7 C -0.056 4.056
8 C -0.140 4.140
9 C 0.029 3.971
10 C -0.551 4.551
11 H 0.073 0.927
12 C -0.139 4.139
13 N -0.529 5.529
14 Si 0.719 3.281
15 H -0.203 1.203
16 H -0.213 1.213
17 H -0.204 1.204
18 C -0.142 4.142
19 C -0.055 4.055
20 N -0.162 5.162
21 C -0.019 4.019
22 C -0.016 4.016
23 N -0.376 5.376
24 C 0.332 3.668
25 O -0.410 6.410
26 C -0.216 4.216
27 C -0.191 4.191
28 C -0.184 4.184
29 H 0.102 0.898
30 H 0.113 0.887
31 H 0.093 0.907
32 H 0.064 0.936
33 H 0.073 0.927
34 H 0.063 0.937
35 H 0.118 0.882
36 H 0.044 0.956
37 H 0.071 0.929
38 H 0.076 0.924
39 H 0.077 0.923
40 H 0.075 0.925
41 H 0.065 0.935
42 H 0.115 0.885
43 H 0.130 0.870
44 H 0.100 0.900
45 H 0.091 0.909
46 H 0.238 0.762
47 H 0.144 0.856
48 H 0.117 0.883
49 H 0.123 0.877
50 H 0.123 0.877
51 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges -22.939 -6.650 -2.576 24.022
hybrid contribution 0.704 -1.509 -0.441 1.722
sum -22.234 -8.158 -3.018 23.875
Atomic orbital electron populations
1.20166 0.83848 1.04193 1.03861 1.24790 0.96524 0.82608 1.06103
1.74024 0.96678 1.24047 1.18070 1.74720 1.11699 1.08589 1.20344
1.22786 0.85988 0.88467 1.01760 1.58993 1.02710 1.51385 1.06248
1.22400 0.94983 1.00491 0.87703 1.21736 0.92428 0.96032 1.03852
1.18704 0.92128 0.97346 0.88950 1.21110 1.08750 1.17535 1.07725
0.92733 1.24968 0.97761 0.95594 0.95612 1.69848 1.36183 1.35420
1.11417 0.86687 0.82468 0.81632 0.77359 1.20347 1.21342 1.20353
1.21723 0.93953 0.97714 1.00845 1.22215 0.94900 1.00032 0.88308
1.46171 1.06559 1.07511 1.56008 1.21841 1.02941 0.79546 0.97567
1.21568 1.02721 0.81276 0.96055 1.45639 1.72715 1.10011 1.09197
1.19665 0.75985 0.87949 0.83231 1.90737 1.50594 1.68136 1.31547
1.22177 1.03201 0.93526 1.02684 1.22940 0.89700 1.03392 1.03022
1.22967 1.00637 1.01547 0.93254 0.89778 0.88728 0.90721 0.93600
0.92664 0.93701 0.88197 0.95602 0.92898 0.92391 0.92308 0.92461
0.93507 0.88503 0.87043 0.90020 0.90936 0.76220 0.85566 0.88299
0.87701 0.87726 0.87320
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.47 10.26 36.00 0.37 -0.10 16
2 C 0.17 2.20 8.07 -154.02 -1.24 0.96 16
3 N -0.29 -4.99 12.18 32.99 0.40 -4.59 16
4 N -0.31 -6.01 12.19 30.31 0.37 -5.64 16
5 C 0.37 6.28 6.41 -318.88 -2.05 4.24 16
6 N -0.47 -8.35 4.67 -174.55 -0.82 -9.16 16
7 C 0.07 1.42 5.37 -3.84 -0.02 1.40 16
8 C -0.10 -2.35 5.12 -26.65 -0.14 -2.49 16
9 C 0.05 1.14 2.16 -91.65 -0.20 0.94 16
10 C -0.51 -13.67 8.56 -34.44 -0.29 -13.96 16
11 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16
12 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16
13 N -0.89 -25.10 11.37 55.43 0.63 -24.47 16
14 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16
15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
18 C -0.10 -2.07 5.32 -26.65 -0.14 -2.22 16
19 C 0.07 1.30 5.39 -3.83 -0.02 1.28 16
20 N -0.47 -6.18 2.81 -114.09 -0.32 -6.50 16
21 C 0.11 0.95 6.12 -4.04 -0.02 0.92 16
22 C 0.11 1.11 6.00 -4.04 -0.02 1.09 16
23 N -0.72 -6.06 5.56 -60.30 -0.33 -6.39 16
24 C 0.55 5.91 7.61 -10.99 -0.08 5.83 16
25 O -0.53 -8.25 16.26 5.56 0.09 -8.16 16
26 C -0.19 -1.47 6.19 -91.77 -0.57 -2.04 16
27 C -0.15 -0.92 10.23 -26.75 -0.27 -1.19 16
28 C -0.15 -1.10 10.04 -26.76 -0.27 -1.37 16
29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.07 0.38 7.30 -51.93 -0.38 0.00 16
32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
33 H 0.05 1.08 8.10 -51.93 -0.42 0.66 16
34 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16
35 H 0.10 2.59 6.17 -51.93 -0.32 2.27 16
36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16
37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16
38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
40 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16
41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
42 H 0.10 0.53 7.30 -51.93 -0.38 0.15 16
43 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16
44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
46 H 0.40 2.01 8.47 -40.82 -0.35 1.66 16
47 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16
48 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
49 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16
50 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16
51 H 0.11 1.02 7.67 -51.93 -0.40 0.63 16
LS Contribution 415.36 15.07 6.26 6.26
Total: -1.00 -34.29 415.36 -12.36 -46.65
By element:
Atomic # 1 Polarization: 9.71 SS G_CDS: -8.55 Total: 1.17 kcal
Atomic # 6 Polarization: -0.06 SS G_CDS: -5.07 Total: -5.13 kcal
Atomic # 7 Polarization: -56.69 SS G_CDS: -0.07 Total: -56.76 kcal
Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal
Total LS contribution 6.26 Total: 6.26 kcal
Total: -34.29 -12.36 -46.65 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001434606835.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.296 kcal
(2) G-P(sol) polarization free energy of solvation -34.292 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.357 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.648 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.648 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds