Wall clock time and date at job start Wed Apr 1 2020 06:11:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 N 1.30297 * 126.34496 * 2 1
4 4 N 1.28537 * 110.05285 * 179.68994 * 3 2 1
5 5 C 1.31217 * 109.85723 * 0.45277 * 4 3 2
6 6 N 1.38578 * 126.47226 * 179.81699 * 5 4 3
7 7 C 1.46846 * 110.99742 * 60.97981 * 6 5 4
8 8 C 1.53035 * 109.52612 * 174.15945 * 7 6 5
9 9 C 1.53118 * 109.27548 * 59.17762 * 8 7 6
10 10 C 1.50705 * 109.52269 * 182.44113 * 9 8 7
11 11 H 1.07999 * 119.99855 * 119.68419 * 10 9 8
12 12 C 1.37873 * 120.00134 * 299.68515 * 10 9 8
13 13 N 1.31514 * 119.99861 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 120.00198 * 179.97438 * 12 10 9
15 15 H 1.48503 * 109.46964 * 59.99707 * 14 12 10
16 16 H 1.48493 * 109.47287 * 179.97438 * 14 12 10
17 17 H 1.48502 * 109.46854 * 300.00204 * 14 12 10
18 18 C 1.53121 * 109.16301 * 302.34554 * 9 8 7
19 19 C 1.46843 * 110.99982 * 296.77187 * 6 5 4
20 20 N 1.36451 * 107.05369 * 359.56085 * 5 4 3
21 21 C 1.46505 * 127.13619 * 180.24313 * 20 5 4
22 22 C 1.52999 * 109.47360 * 91.66038 * 21 20 5
23 23 N 1.46495 * 109.47127 * 183.92742 * 22 21 20
24 24 C 1.34776 * 119.99986 * 179.97438 * 23 22 21
25 25 O 1.21274 * 119.99788 * 359.97438 * 24 23 22
26 26 C 1.50700 * 120.00084 * 179.97438 * 24 23 22
27 27 C 1.53005 * 117.50073 * 248.62601 * 26 24 23
28 28 C 1.52996 * 117.50164 * 180.02562 * 26 24 23
29 29 H 1.09000 * 109.47232 * 270.04446 * 1 2 3
30 30 H 1.09004 * 109.47516 * 30.03869 * 1 2 3
31 31 H 1.08997 * 109.47549 * 150.03967 * 1 2 3
32 32 H 1.09006 * 109.46171 * 294.17804 * 7 6 5
33 33 H 1.09004 * 109.46141 * 54.14278 * 7 6 5
34 34 H 1.09003 * 109.49952 * 299.24297 * 8 7 6
35 35 H 1.09000 * 109.50716 * 179.12243 * 8 7 6
36 36 H 1.08997 * 109.52387 * 62.25198 * 9 8 7
37 37 H 0.96996 * 119.99728 * 180.02562 * 13 12 10
38 38 H 1.08996 * 109.50397 * 297.71844 * 18 9 8
39 39 H 1.09000 * 109.50182 * 177.59092 * 18 9 8
40 40 H 1.08995 * 109.46380 * 305.85050 * 19 6 5
41 41 H 1.08999 * 109.46260 * 65.82430 * 19 6 5
42 42 H 1.08997 * 109.47093 * 211.66417 * 21 20 5
43 43 H 1.09001 * 109.46923 * 331.65943 * 21 20 5
44 44 H 1.09005 * 109.46710 * 303.92188 * 22 21 20
45 45 H 1.09002 * 109.47029 * 63.92294 * 22 21 20
46 46 H 0.97002 * 120.00319 * 359.97438 * 23 22 21
47 47 H 1.09007 * 115.54776 * 34.32821 * 26 24 23
48 48 H 1.08994 * 117.49629 * 359.97438 * 27 26 24
49 49 H 1.08992 * 117.49927 * 145.02357 * 27 26 24
50 50 H 1.08998 * 117.50333 * 214.98394 * 28 26 24
51 51 H 1.09003 * 117.49613 * 359.97438 * 28 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2791 1.0495 0.0000
4 7 3.5129 0.6889 0.0065
5 6 3.5945 -0.6207 0.0013
6 7 4.7580 -1.3735 0.0021
7 6 5.5570 -1.1060 1.2048
8 6 6.7560 -2.0562 1.2441
9 6 7.6061 -1.8495 -0.0126
10 6 8.7556 -2.8240 -0.0089
11 1 8.8578 -3.5416 -0.8096
12 6 9.6768 -2.7996 1.0166
13 7 9.5521 -1.9262 1.9919
14 14 11.1013 -4.0080 1.0216
15 1 11.9206 -3.8124 -0.2014
16 1 11.9429 -3.7763 2.2229
17 1 10.5731 -5.3957 1.0468
18 6 6.7379 -2.0870 -1.2513
19 6 5.5394 -1.1359 -1.2182
20 7 2.3174 -1.1013 0.0008
21 6 1.9009 -2.5059 0.0008
22 6 1.7153 -2.9829 1.4426
23 7 1.3903 -4.4114 1.4463
24 6 1.1826 -5.0522 2.6136
25 8 1.2653 -4.4463 3.6610
26 6 0.8478 -6.5215 2.6175
27 6 -0.5644 -6.9232 3.0482
28 6 0.6229 -7.1913 3.9745
29 1 -0.3634 0.0008 1.0277
30 1 -0.3634 0.8896 -0.5144
31 1 -0.3634 -0.8903 -0.5132
32 1 5.9109 -0.0753 1.1838
33 1 4.9418 -1.2607 2.0913
34 1 6.4026 -3.0867 1.2789
35 1 7.3574 -1.8469 2.1287
36 1 7.9916 -0.8301 -0.0280
37 1 10.2004 -1.9088 2.7132
38 1 6.3843 -3.1180 -1.2556
39 1 7.3264 -1.8996 -2.1495
40 1 4.9116 -1.3123 -2.0916
41 1 5.8934 -0.1050 -1.2277
42 1 0.9593 -2.6056 -0.5391
43 1 2.6651 -3.1113 -0.4867
44 1 2.6368 -2.8185 2.0011
45 1 0.9034 -2.4243 1.9084
46 1 1.3246 -4.8960 0.6086
47 1 1.3237 -7.1141 1.8361
48 1 -1.2510 -6.1247 3.3291
49 1 -1.0177 -7.7802 2.5502
50 1 0.9508 -8.2248 4.0863
51 1 0.7175 -6.5693 4.8646
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001434606835.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:11:33
Heat of formation + Delta-G solvation = 48.589406 kcal
Electronic energy + Delta-G solvation = -31149.961775 eV
Core-core repulsion = 27085.514741 eV
Total energy + Delta-G solvation = -4064.447034 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-44.11199 -41.03607 -39.95703 -37.72636 -36.82812 -35.95004 -35.19782 -33.67665
-32.21655 -31.68008 -30.49739 -28.52438 -27.35290 -26.14193 -24.44962 -23.97448
-23.80944 -23.28594 -22.32270 -21.94924 -21.07193 -20.33479 -18.74759 -18.48176
-18.20050 -17.71545 -17.12878 -16.80599 -16.69262 -16.50012 -15.91974 -15.73773
-15.45109 -15.17082 -15.06199 -14.73459 -14.60709 -14.39640 -14.24595 -13.84823
-13.63552 -13.55909 -13.44592 -13.27033 -12.96540 -12.76339 -12.75674 -12.67207
-12.45113 -12.43335 -12.15833 -12.02168 -11.69605 -11.55667 -11.48216 -11.41821
-11.30740 -11.00099 -10.93449 -10.78232 -10.41361 -10.28874 -10.05005 -9.87914
-8.07670 -6.21420 0.56505 1.06233 1.41586 1.43543 1.44410 1.52037
1.69796 2.06801 2.44659 2.71453 2.91665 3.20119 3.40971 3.50196
3.54494 3.72166 3.83035 3.88375 3.98209 3.99393 4.09745 4.12677
4.16470 4.25240 4.36738 4.40900 4.47806 4.56182 4.60470 4.66339
4.70372 4.76055 4.84541 4.87086 4.93482 4.95803 4.97022 5.01776
5.04616 5.16728 5.20636 5.22105 5.25969 5.46360 5.56785 5.65774
5.69969 5.97188 6.10620 6.23844 6.36950 6.43999 6.90272 7.16501
7.47138 7.62264 8.97229
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.007409 B = 0.003396 C = 0.002480
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3778.085749 B = 8243.984098 C =11286.501278
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 C 0.192 3.808
3 N -0.334 5.334
4 N -0.352 5.352
5 C 0.346 3.654
6 N -0.452 5.452
7 C 0.087 3.913
8 C -0.088 4.088
9 C 0.044 3.956
10 C -0.529 4.529
11 H 0.059 0.941
12 C 0.011 3.989
13 N -0.920 5.920
14 Si 0.954 3.046
15 H -0.271 1.271
16 H -0.289 1.289
17 H -0.268 1.268
18 C -0.092 4.092
19 C 0.080 3.920
20 N -0.461 5.461
21 C 0.106 3.894
22 C 0.117 3.883
23 N -0.704 5.704
24 C 0.537 3.463
25 O -0.591 6.591
26 C -0.198 4.198
27 C -0.131 4.131
28 C -0.164 4.164
29 H 0.098 0.902
30 H 0.104 0.896
31 H 0.113 0.887
32 H 0.022 0.978
33 H 0.057 0.943
34 H 0.043 0.957
35 H 0.065 0.935
36 H -0.013 1.013
37 H 0.259 0.741
38 H 0.068 0.932
39 H 0.066 0.934
40 H 0.088 0.912
41 H 0.026 0.974
42 H 0.149 0.851
43 H 0.115 0.885
44 H 0.036 0.964
45 H 0.072 0.928
46 H 0.424 0.576
47 H 0.155 0.845
48 H 0.090 0.910
49 H 0.136 0.864
50 H 0.124 0.876
51 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.313 -10.886 -5.858 29.072
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.076 4.076
3 N -0.174 5.174
4 N -0.194 5.194
5 C -0.012 4.012
6 N -0.179 5.179
7 C -0.040 4.040
8 C -0.126 4.126
9 C 0.025 3.975
10 C -0.567 4.567
11 H 0.077 0.923
12 C -0.188 4.188
13 N -0.560 5.560
14 Si 0.780 3.220
15 H -0.196 1.196
16 H -0.215 1.215
17 H -0.193 1.193
18 C -0.130 4.130
19 C -0.047 4.047
20 N -0.154 5.154
21 C -0.016 4.016
22 C -0.009 4.009
23 N -0.358 5.358
24 C 0.325 3.675
25 O -0.472 6.472
26 C -0.218 4.218
27 C -0.168 4.168
28 C -0.202 4.202
29 H 0.116 0.884
30 H 0.123 0.877
31 H 0.131 0.869
32 H 0.040 0.960
33 H 0.075 0.925
34 H 0.061 0.939
35 H 0.084 0.916
36 H 0.005 0.995
37 H 0.068 0.932
38 H 0.086 0.914
39 H 0.085 0.915
40 H 0.106 0.894
41 H 0.044 0.956
42 H 0.167 0.833
43 H 0.133 0.867
44 H 0.055 0.945
45 H 0.090 0.910
46 H 0.262 0.738
47 H 0.173 0.827
48 H 0.109 0.891
49 H 0.154 0.846
50 H 0.142 0.858
51 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -25.862 -9.437 -4.978 27.977
hybrid contribution 1.506 -0.613 0.313 1.656
sum -24.356 -10.051 -4.665 26.758
Atomic orbital electron populations
1.20524 0.79516 1.06625 1.05454 1.25865 0.98406 0.81448 1.01885
1.73948 0.96446 1.26118 1.20933 1.74592 1.13406 1.10090 1.21324
1.22587 0.86766 0.88255 1.03554 1.58889 1.02711 1.51274 1.04978
1.22019 0.94397 0.98180 0.89384 1.21436 0.92855 0.96314 1.02029
1.18669 0.92661 0.94660 0.91508 1.21508 1.09579 1.17858 1.07719
0.92256 1.25775 1.00395 0.97261 0.95344 1.70018 1.36976 1.37008
1.11978 0.85674 0.79336 0.79713 0.77309 1.19619 1.21501 1.19343
1.21550 0.93984 0.98676 0.98813 1.22119 0.94784 0.98279 0.89496
1.46316 1.04947 1.09232 1.54937 1.22171 1.05481 0.77051 0.96932
1.21335 1.00573 0.82483 0.96502 1.45469 1.71336 1.09292 1.09679
1.20365 0.74990 0.89325 0.82835 1.90716 1.53222 1.69592 1.33630
1.22269 1.04869 0.91314 1.03396 1.23040 0.88624 1.03788 1.01378
1.23012 1.02639 1.02055 0.92453 0.88386 0.87705 0.86890 0.96005
0.92478 0.93867 0.91641 0.99473 0.93171 0.91362 0.91518 0.89389
0.95562 0.83328 0.86683 0.94497 0.90974 0.73783 0.82700 0.89149
0.84603 0.85776 0.90234
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.69 10.26 71.23 0.73 0.04 16
2 C 0.19 4.63 8.07 137.64 1.11 5.74 16
3 N -0.33 -11.51 12.18 -49.54 -0.60 -12.12 16
4 N -0.35 -13.86 12.19 -58.01 -0.71 -14.57 16
5 C 0.35 11.81 6.41 260.11 1.67 13.47 16
6 N -0.45 -16.28 4.67 -706.15 -3.30 -19.58 16
7 C 0.09 3.72 5.37 86.33 0.46 4.19 16
8 C -0.09 -4.24 5.12 30.65 0.16 -4.08 16
9 C 0.04 2.18 2.16 -11.46 -0.02 2.15 16
10 C -0.53 -28.63 8.56 25.60 0.22 -28.41 16
11 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16
12 C 0.01 0.59 5.31 84.65 0.45 1.04 16
13 N -0.92 -53.95 11.37 21.45 0.24 -53.71 16
14 Si 0.95 43.46 29.54 68.60 2.03 45.49 16
15 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16
16 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16
17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
18 C -0.09 -3.65 5.32 30.65 0.16 -3.48 16
19 C 0.08 2.87 5.39 86.33 0.47 3.33 16
20 N -0.46 -11.22 2.81 -514.86 -1.45 -12.67 16
21 C 0.11 1.53 6.12 86.38 0.53 2.06 16
22 C 0.12 2.20 6.00 86.38 0.52 2.72 16
23 N -0.70 -10.19 5.56 -463.07 -2.57 -12.77 16
24 C 0.54 11.10 7.61 87.66 0.67 11.77 16
25 O -0.59 -18.83 16.26 -3.01 -0.05 -18.88 16
26 C -0.20 -2.53 6.19 -11.54 -0.07 -2.60 16
27 C -0.13 -1.22 10.23 30.58 0.31 -0.91 16
28 C -0.16 -2.29 10.04 30.58 0.31 -1.98 16
29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16
30 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16
31 H 0.11 0.44 7.30 -2.39 -0.02 0.42 16
32 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16
33 H 0.06 2.38 8.10 -2.38 -0.02 2.36 16
34 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16
35 H 0.07 3.62 6.17 -2.39 -0.01 3.60 16
36 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16
37 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16
38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16
39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16
40 H 0.09 2.65 8.10 -2.39 -0.02 2.63 16
41 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16
42 H 0.15 0.69 7.30 -2.39 -0.02 0.68 16
43 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16
44 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16
45 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
46 H 0.42 2.58 8.47 -92.71 -0.79 1.80 16
47 H 0.16 1.07 8.14 -2.38 -0.02 1.05 16
48 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
49 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16
50 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16
51 H 0.08 1.58 7.67 -2.39 -0.02 1.56 16
Total: -1.00 -81.92 415.36 1.40 -80.51
By element:
Atomic # 1 Polarization: 13.08 SS G_CDS: 0.14 Total: 13.23 kcal
Atomic # 6 Polarization: -2.61 SS G_CDS: 7.66 Total: 5.06 kcal
Atomic # 7 Polarization: -117.03 SS G_CDS: -8.38 Total: -125.41 kcal
Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.88 kcal
Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal
Total: -81.92 1.40 -80.51 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001434606835.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.103 kcal
(2) G-P(sol) polarization free energy of solvation -81.916 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.187 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.513 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.589 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds