Wall clock time and date at job start Wed Apr 1 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47302 * 2 1 4 4 N 1.32160 * 120.53696 * 274.90934 * 3 2 1 5 5 C 1.31849 * 120.96573 * 180.33357 * 4 3 2 6 6 N 1.31892 * 122.10046 * 359.65774 * 5 4 3 7 7 C 1.32139 * 120.95684 * 0.02562 * 6 5 4 8 8 C 1.39928 * 120.53658 * 94.63002 * 3 2 1 9 9 C 1.47833 * 120.93833 * 359.97243 * 8 3 2 10 10 O 1.21552 * 119.99973 * 50.96461 * 9 8 3 11 11 N 1.34777 * 119.99887 * 230.96127 * 9 8 3 12 12 C 1.46497 * 120.00139 * 5.13191 * 11 9 8 13 13 C 1.46502 * 119.99896 * 185.12636 * 11 9 8 14 14 C 1.53000 * 109.46927 * 90.00288 * 13 11 9 15 15 N 1.46897 * 109.46794 * 180.02562 * 14 13 11 16 16 C 1.46901 * 110.99879 * 170.00096 * 15 14 13 17 17 C 1.53239 * 109.34009 * 172.74864 * 16 15 14 18 18 N 1.47075 * 108.52519 * 53.82419 * 17 16 15 19 19 C 1.36942 * 120.87864 * 128.79256 * 18 17 16 20 20 H 1.07997 * 119.99879 * 210.92770 * 19 18 17 21 21 C 1.38818 * 120.00079 * 30.93109 * 19 18 17 22 22 N 1.31618 * 119.99584 * 10.08271 * 21 19 18 23 23 Si 1.86794 * 119.99966 * 190.08323 * 21 19 18 24 24 H 1.48500 * 109.47288 * 89.99787 * 23 21 19 25 25 H 1.48497 * 109.47329 * 209.99957 * 23 21 19 26 26 H 1.48499 * 109.47138 * 329.99808 * 23 21 19 27 27 C 1.47071 * 118.23882 * 308.81753 * 18 17 16 28 28 C 1.46894 * 111.00506 * 45.69826 * 15 14 13 29 29 H 1.09008 * 109.47206 * 60.00063 * 1 2 3 30 30 H 1.09000 * 109.47599 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47487 * 300.00277 * 1 2 3 32 32 H 1.09006 * 109.46992 * 239.99625 * 2 1 3 33 33 H 1.09004 * 109.46839 * 120.00269 * 2 1 3 34 34 H 1.08004 * 118.95432 * 179.68023 * 5 4 3 35 35 H 1.08001 * 120.52909 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46733 * 275.20034 * 12 11 9 37 37 H 1.09001 * 109.47196 * 35.19527 * 12 11 9 38 38 H 1.08997 * 109.47702 * 155.19945 * 12 11 9 39 39 H 1.09003 * 109.47185 * 330.00365 * 13 11 9 40 40 H 1.09003 * 109.46945 * 210.00294 * 13 11 9 41 41 H 1.09003 * 109.47125 * 60.00040 * 14 13 11 42 42 H 1.08999 * 109.46835 * 299.99684 * 14 13 11 43 43 H 1.09001 * 109.49637 * 52.78509 * 16 15 14 44 44 H 1.09004 * 109.49151 * 292.70290 * 16 15 14 45 45 H 1.09003 * 109.62899 * 173.54387 * 17 16 15 46 46 H 1.09007 * 109.62693 * 293.92056 * 17 16 15 47 47 H 0.97006 * 119.99222 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.62914 * 170.88681 * 27 18 17 49 49 H 1.08994 * 109.63331 * 291.47438 * 27 18 17 50 50 H 1.09004 * 109.49323 * 67.29067 * 28 15 14 51 51 H 1.09000 * 109.51267 * 307.22823 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1643 2.0863 -1.1341 5 6 2.6092 3.3275 -1.1445 6 7 2.9356 3.9643 -0.0366 7 6 2.8287 3.3765 1.1420 8 6 2.3611 2.0586 1.2013 9 6 2.2240 1.3583 2.4960 10 8 2.7175 0.2578 2.6469 11 7 1.5519 1.9402 3.5090 12 6 0.8619 3.2144 3.2939 13 6 1.5112 1.2982 4.8253 14 6 2.6917 1.7864 5.6674 15 7 2.6512 1.1422 6.9870 16 6 3.8885 1.3989 7.7362 17 6 3.7355 0.8683 9.1656 18 7 3.3304 -0.5440 9.0990 19 6 4.0078 -1.5034 9.8032 20 1 4.0745 -2.5100 9.4177 21 6 4.6087 -1.1821 11.0126 22 7 4.3650 -0.0199 11.5803 23 14 5.7633 -2.3992 11.8343 24 1 7.1515 -2.1590 11.3648 25 1 5.7015 -2.2229 13.3075 26 1 5.3546 -3.7831 11.4838 27 6 2.1789 -0.8986 8.2556 28 6 2.3932 -0.2985 6.8619 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.7094 3.8391 -2.0904 35 1 3.0982 3.9044 2.0448 36 1 1.5667 4.0357 3.4241 37 1 0.4554 3.2414 2.2828 38 1 0.0503 3.3144 4.0145 39 1 1.5739 0.2167 4.7042 40 1 0.5773 1.5543 5.3257 41 1 2.6290 2.8678 5.7884 42 1 3.6255 1.5302 5.1669 43 1 4.0805 2.4715 7.7649 44 1 4.7212 0.8929 7.2476 45 1 4.6868 0.9521 9.6911 46 1 2.9750 1.4460 9.6912 47 1 4.7852 0.2047 12.4252 48 1 2.1012 -1.9831 8.1792 49 1 1.2664 -0.4931 8.6924 50 1 3.2467 -0.7809 6.3855 51 1 1.5009 -0.4573 6.2564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481473764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:28 Heat of formation + Delta-G solvation = 56.135453 kcal Electronic energy + Delta-G solvation = -31057.918343 eV Core-core repulsion = 26993.798530 eV Total energy + Delta-G solvation = -4064.119813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.83068 -39.91712 -38.17540 -36.27002 -35.38504 -34.45460 -33.38142 -31.72935 -31.25072 -30.24170 -28.97549 -27.24561 -26.43028 -25.53004 -25.05475 -23.57290 -22.51451 -22.34344 -21.57355 -19.91128 -19.06591 -18.37368 -17.67009 -17.35301 -17.03825 -16.52408 -15.53499 -15.36234 -14.97397 -14.78223 -14.68492 -14.45834 -14.37424 -14.18204 -13.95179 -13.65221 -13.48227 -13.35394 -13.25033 -13.08877 -12.97460 -12.69750 -12.27583 -12.09946 -12.02418 -11.93163 -11.49079 -11.37017 -11.13758 -11.05404 -10.88573 -10.70238 -10.45839 -10.30964 -10.22141 -10.05221 -9.95422 -9.76648 -9.74672 -9.62839 -8.97008 -8.49445 -7.83629 -6.58166 -5.76089 -3.23170 0.09030 0.53005 2.22828 2.53609 3.22083 3.38671 3.45095 3.46552 3.50575 3.62148 3.85247 3.96534 4.42205 4.42966 4.51516 4.67218 4.74793 4.79099 4.87876 4.91237 5.00751 5.02375 5.15655 5.26484 5.31549 5.42520 5.42890 5.51053 5.56392 5.62687 5.71192 5.78710 5.87308 5.91051 5.93429 5.95566 6.17399 6.20685 6.27505 6.37567 6.40043 6.56240 6.71601 6.93057 6.95672 7.26709 7.52843 7.57143 7.65816 7.71945 7.74122 7.82993 8.48775 9.24599 9.85792 10.46253 11.32415 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.002110 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.854159 B =13268.634665 C =13603.126378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 C 0.230 3.770 4 N -0.519 5.519 5 C 0.311 3.689 6 N -0.523 5.523 7 C 0.185 3.815 8 C -0.233 4.233 9 C 0.570 3.430 10 O -0.516 6.516 11 N -0.606 5.606 12 C 0.075 3.925 13 C 0.111 3.889 14 C 0.041 3.959 15 N -0.528 5.528 16 C 0.036 3.964 17 C 0.180 3.820 18 N -0.595 5.595 19 C -0.251 4.251 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.906 5.906 23 Si 0.905 3.095 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.149 3.851 28 C 0.036 3.964 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.202 0.798 35 H 0.174 0.826 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.030 0.970 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.088 0.912 46 H 0.027 0.973 47 H 0.254 0.746 48 H 0.055 0.945 49 H 0.025 0.975 50 H 0.029 0.971 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.933 8.857 -24.383 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.135 4.135 3 C 0.083 3.917 4 N -0.233 5.233 5 C 0.024 3.976 6 N -0.237 5.237 7 C 0.018 3.982 8 C -0.241 4.241 9 C 0.356 3.644 10 O -0.392 6.392 11 N -0.339 5.339 12 C -0.068 4.068 13 C -0.011 4.011 14 C -0.089 4.089 15 N -0.254 5.254 16 C -0.093 4.093 17 C 0.054 3.946 18 N -0.319 5.319 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.550 5.550 23 Si 0.735 3.265 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.022 3.978 28 C -0.093 4.093 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.218 0.782 35 H 0.191 0.809 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.106 0.894 46 H 0.045 0.955 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.043 0.957 50 H 0.048 0.952 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.909 8.995 -24.725 27.778 hybrid contribution 1.335 -0.956 0.738 1.800 sum -7.575 8.039 -23.986 26.407 Atomic orbital electron populations 1.21660 0.93211 1.02935 1.02036 1.20910 0.97153 0.89416 1.06069 1.21874 0.87042 0.96264 0.86493 1.68370 1.15646 1.09812 1.29477 1.25225 0.87717 0.87356 0.97256 1.68497 1.17709 1.38476 0.99001 1.23507 0.88395 0.89522 0.96762 1.21599 1.08482 0.97756 0.96263 1.17839 0.78574 0.85182 0.82798 1.90813 1.47104 1.19164 1.82103 1.47790 1.51638 1.23527 1.10927 1.21936 0.97556 0.84839 1.02479 1.21850 0.99754 0.99129 0.80389 1.22421 0.96733 0.99474 0.90222 1.62080 1.37060 1.12070 1.14158 1.22925 0.88700 0.99147 0.98531 1.20847 1.00818 0.83850 0.89084 1.44058 1.30879 1.04016 1.52922 1.19192 1.27644 0.92150 0.99112 0.91831 1.25169 1.01122 0.97351 0.95915 1.69972 1.45038 1.22050 1.17978 0.86248 0.80881 0.80820 0.78550 1.21490 1.21663 1.20430 1.20994 0.90991 0.97013 0.88767 1.22759 0.99204 0.87496 0.99831 0.92141 0.91091 0.92804 0.88941 0.87365 0.78196 0.80923 0.92117 0.91738 0.89752 0.88830 0.89157 0.91158 0.95207 0.92241 0.95682 0.89392 0.95515 0.93618 0.92644 0.95674 0.95219 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.10 -0.89 5.99 -27.89 -0.17 -1.06 16 3 C 0.23 2.30 6.12 -81.82 -0.50 1.80 16 4 N -0.52 -4.94 10.36 -10.48 -0.11 -5.05 16 5 C 0.31 2.49 12.27 -92.02 -1.13 1.37 16 6 N -0.52 -4.64 10.42 -14.24 -0.15 -4.79 16 7 C 0.18 1.59 9.53 -16.77 -0.16 1.43 16 8 C -0.23 -2.33 4.65 -104.69 -0.49 -2.81 16 9 C 0.57 6.61 6.71 -12.33 -0.08 6.53 16 10 O -0.52 -7.83 14.56 5.32 0.08 -7.75 16 11 N -0.61 -5.92 2.87 -182.70 -0.52 -6.44 16 12 C 0.08 0.47 9.20 59.85 0.55 1.02 16 13 C 0.11 1.28 4.74 -4.04 -0.02 1.26 16 14 C 0.04 0.57 5.59 -3.83 -0.02 0.55 16 15 N -0.53 -9.28 4.78 -234.32 -1.12 -10.40 16 16 C 0.04 0.72 5.58 -3.70 -0.02 0.70 16 17 C 0.18 4.38 5.36 -3.60 -0.02 4.36 16 18 N -0.60 -15.29 3.03 -172.02 -0.52 -15.81 16 19 C -0.25 -7.01 9.62 -15.05 -0.14 -7.15 16 20 H 0.06 1.75 7.85 -52.49 -0.41 1.34 16 21 C 0.00 0.08 5.07 -17.43 -0.09 -0.01 16 22 N -0.91 -26.42 11.05 55.49 0.61 -25.80 16 23 Si 0.91 21.93 29.57 -169.99 -5.03 16.90 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 C 0.15 3.20 6.69 -3.61 -0.02 3.18 16 28 C 0.04 0.66 5.04 -3.70 -0.02 0.64 16 29 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.11 1.18 5.58 -51.93 -0.29 0.89 16 34 H 0.20 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.17 1.14 6.97 -52.49 -0.37 0.77 16 36 H 0.06 0.31 7.13 -51.93 -0.37 -0.06 16 37 H 0.06 0.37 6.99 -51.93 -0.36 0.01 16 38 H 0.08 0.44 7.83 -51.93 -0.41 0.03 16 39 H 0.09 1.26 5.39 -51.93 -0.28 0.98 16 40 H 0.09 0.93 7.86 -51.93 -0.41 0.52 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 43 H 0.06 1.06 8.11 -51.93 -0.42 0.64 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.37 6.23 -51.93 -0.32 2.05 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 1.00 5.73 -51.93 -0.30 0.70 16 LS Contribution 401.35 15.07 6.05 6.05 Total: -1.00 -33.18 401.35 -10.81 -43.99 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -8.13 Total: -2.02 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -1.96 Total: 11.14 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -1.81 Total: -68.30 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.08 Total: -7.75 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.18 -10.81 -43.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481473764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.122 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds