Wall clock time and date at job start Wed Apr 1 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47302 * 2 1 4 4 N 1.32160 * 120.53696 * 274.90934 * 3 2 1 5 5 C 1.31849 * 120.96573 * 180.33357 * 4 3 2 6 6 N 1.31892 * 122.10046 * 359.65774 * 5 4 3 7 7 C 1.32139 * 120.95684 * 0.02562 * 6 5 4 8 8 C 1.39928 * 120.53658 * 94.63002 * 3 2 1 9 9 C 1.47833 * 120.93833 * 359.97243 * 8 3 2 10 10 O 1.21552 * 119.99973 * 50.96461 * 9 8 3 11 11 N 1.34777 * 119.99887 * 230.96127 * 9 8 3 12 12 C 1.46497 * 120.00139 * 5.13191 * 11 9 8 13 13 C 1.46502 * 119.99896 * 185.12636 * 11 9 8 14 14 C 1.53000 * 109.46927 * 90.00288 * 13 11 9 15 15 N 1.46897 * 109.46794 * 180.02562 * 14 13 11 16 16 C 1.46901 * 110.99879 * 170.00096 * 15 14 13 17 17 C 1.53239 * 109.34009 * 172.74864 * 16 15 14 18 18 N 1.47075 * 108.52519 * 53.82419 * 17 16 15 19 19 C 1.36942 * 120.87864 * 128.79256 * 18 17 16 20 20 H 1.07997 * 119.99879 * 210.92770 * 19 18 17 21 21 C 1.38818 * 120.00079 * 30.93109 * 19 18 17 22 22 N 1.31618 * 119.99584 * 10.08271 * 21 19 18 23 23 Si 1.86794 * 119.99966 * 190.08323 * 21 19 18 24 24 H 1.48500 * 109.47288 * 89.99787 * 23 21 19 25 25 H 1.48497 * 109.47329 * 209.99957 * 23 21 19 26 26 H 1.48499 * 109.47138 * 329.99808 * 23 21 19 27 27 C 1.47071 * 118.23882 * 308.81753 * 18 17 16 28 28 C 1.46894 * 111.00506 * 45.69826 * 15 14 13 29 29 H 1.09008 * 109.47206 * 60.00063 * 1 2 3 30 30 H 1.09000 * 109.47599 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47487 * 300.00277 * 1 2 3 32 32 H 1.09006 * 109.46992 * 239.99625 * 2 1 3 33 33 H 1.09004 * 109.46839 * 120.00269 * 2 1 3 34 34 H 1.08004 * 118.95432 * 179.68023 * 5 4 3 35 35 H 1.08001 * 120.52909 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46733 * 275.20034 * 12 11 9 37 37 H 1.09001 * 109.47196 * 35.19527 * 12 11 9 38 38 H 1.08997 * 109.47702 * 155.19945 * 12 11 9 39 39 H 1.09003 * 109.47185 * 330.00365 * 13 11 9 40 40 H 1.09003 * 109.46945 * 210.00294 * 13 11 9 41 41 H 1.09003 * 109.47125 * 60.00040 * 14 13 11 42 42 H 1.08999 * 109.46835 * 299.99684 * 14 13 11 43 43 H 1.09001 * 109.49637 * 52.78509 * 16 15 14 44 44 H 1.09004 * 109.49151 * 292.70290 * 16 15 14 45 45 H 1.09003 * 109.62899 * 173.54387 * 17 16 15 46 46 H 1.09007 * 109.62693 * 293.92056 * 17 16 15 47 47 H 0.97006 * 119.99222 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.62914 * 170.88681 * 27 18 17 49 49 H 1.08994 * 109.63331 * 291.47438 * 27 18 17 50 50 H 1.09004 * 109.49323 * 67.29067 * 28 15 14 51 51 H 1.09000 * 109.51267 * 307.22823 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1643 2.0863 -1.1341 5 6 2.6092 3.3275 -1.1445 6 7 2.9356 3.9643 -0.0366 7 6 2.8287 3.3765 1.1420 8 6 2.3611 2.0586 1.2013 9 6 2.2240 1.3583 2.4960 10 8 2.7175 0.2578 2.6469 11 7 1.5519 1.9402 3.5090 12 6 0.8619 3.2144 3.2939 13 6 1.5112 1.2982 4.8253 14 6 2.6917 1.7864 5.6674 15 7 2.6512 1.1422 6.9870 16 6 3.8885 1.3989 7.7362 17 6 3.7355 0.8683 9.1656 18 7 3.3304 -0.5440 9.0990 19 6 4.0078 -1.5034 9.8032 20 1 4.0745 -2.5100 9.4177 21 6 4.6087 -1.1821 11.0126 22 7 4.3650 -0.0199 11.5803 23 14 5.7633 -2.3992 11.8343 24 1 7.1515 -2.1590 11.3648 25 1 5.7015 -2.2229 13.3075 26 1 5.3546 -3.7831 11.4838 27 6 2.1789 -0.8986 8.2556 28 6 2.3932 -0.2985 6.8619 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.7094 3.8391 -2.0904 35 1 3.0982 3.9044 2.0448 36 1 1.5667 4.0357 3.4241 37 1 0.4554 3.2414 2.2828 38 1 0.0503 3.3144 4.0145 39 1 1.5739 0.2167 4.7042 40 1 0.5773 1.5543 5.3257 41 1 2.6290 2.8678 5.7884 42 1 3.6255 1.5302 5.1669 43 1 4.0805 2.4715 7.7649 44 1 4.7212 0.8929 7.2476 45 1 4.6868 0.9521 9.6911 46 1 2.9750 1.4460 9.6912 47 1 4.7852 0.2047 12.4252 48 1 2.1012 -1.9831 8.1792 49 1 1.2664 -0.4931 8.6924 50 1 3.2467 -0.7809 6.3855 51 1 1.5009 -0.4573 6.2564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481473764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:26 Heat of formation + Delta-G solvation = 34.460851 kcal Electronic energy + Delta-G solvation = -31058.858225 eV Core-core repulsion = 26993.798530 eV Total energy + Delta-G solvation = -4065.059694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.53207 -40.79657 -39.67416 -37.27712 -36.22270 -35.93184 -34.17032 -33.33520 -32.29879 -31.77291 -30.33413 -28.19131 -27.65808 -26.24992 -26.03798 -25.11532 -24.18163 -23.16078 -22.77497 -21.00549 -20.60891 -19.07641 -18.78040 -18.45306 -17.96637 -17.69136 -17.00473 -16.36878 -16.19895 -15.91464 -15.78127 -15.58184 -15.42247 -15.29514 -15.07631 -15.03275 -14.88659 -14.57916 -14.42770 -13.94584 -13.89513 -13.65094 -13.36371 -13.15318 -13.03775 -12.96241 -12.81533 -12.65044 -12.62984 -12.34412 -12.16813 -12.12409 -12.02437 -11.93227 -11.72030 -11.52989 -11.45586 -11.06077 -10.68516 -10.60581 -10.42892 -9.82613 -9.33464 -8.62872 -7.88153 -5.38969 -0.58646 -0.14802 1.39454 1.45474 1.46156 1.55552 1.73010 2.48950 2.55554 2.86579 2.97976 3.06779 3.20046 3.27590 3.30386 3.67710 3.73888 3.91735 4.00926 4.11717 4.17325 4.20298 4.24044 4.30374 4.32534 4.41859 4.46554 4.54904 4.56403 4.63109 4.68511 4.69043 4.78613 4.85355 4.86023 4.92965 4.94078 4.98482 5.03273 5.11368 5.19998 5.25956 5.34528 5.37945 5.60145 5.69430 5.72887 6.10789 6.14991 6.19404 6.39247 6.87361 6.88864 7.13942 7.82505 8.38027 9.18027 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.002110 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.854159 B =13268.634665 C =13603.126378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 C 0.222 3.778 4 N -0.532 5.532 5 C 0.313 3.687 6 N -0.532 5.532 7 C 0.192 3.808 8 C -0.245 4.245 9 C 0.571 3.429 10 O -0.561 6.561 11 N -0.599 5.599 12 C 0.069 3.931 13 C 0.118 3.882 14 C 0.048 3.952 15 N -0.529 5.529 16 C 0.051 3.949 17 C 0.188 3.812 18 N -0.616 5.616 19 C -0.266 4.266 20 H 0.062 0.938 21 C -0.049 4.049 22 N -0.934 5.934 23 Si 0.970 3.030 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.270 1.270 27 C 0.145 3.855 28 C 0.050 3.950 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.234 0.766 35 H 0.193 0.807 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.011 0.989 43 H 0.084 0.916 44 H 0.010 0.990 45 H 0.055 0.945 46 H 0.005 0.995 47 H 0.251 0.749 48 H 0.057 0.943 49 H 0.024 0.976 50 H 0.010 0.990 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 10.153 -26.131 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 C 0.075 3.925 4 N -0.246 5.246 5 C 0.027 3.973 6 N -0.246 5.246 7 C 0.025 3.975 8 C -0.253 4.253 9 C 0.358 3.642 10 O -0.440 6.440 11 N -0.330 5.330 12 C -0.073 4.073 13 C -0.004 4.004 14 C -0.080 4.080 15 N -0.254 5.254 16 C -0.078 4.078 17 C 0.062 3.938 18 N -0.340 5.340 19 C -0.396 4.396 20 H 0.080 0.920 21 C -0.244 4.244 22 N -0.580 5.580 23 Si 0.798 3.202 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.194 1.194 27 C 0.019 3.981 28 C -0.079 4.079 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.250 0.750 35 H 0.210 0.790 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.112 0.888 42 H 0.030 0.970 43 H 0.103 0.897 44 H 0.028 0.972 45 H 0.073 0.927 46 H 0.023 0.977 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.042 0.958 50 H 0.028 0.972 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.871 10.320 -26.510 30.112 hybrid contribution 1.578 -1.308 1.209 2.379 sum -8.293 9.012 -25.301 28.110 Atomic orbital electron populations 1.21615 0.91923 1.03569 1.02026 1.20875 0.98245 0.89183 1.05194 1.22015 0.87054 0.96563 0.86858 1.68431 1.16435 1.10541 1.29164 1.25920 0.86146 0.86910 0.98315 1.68598 1.18136 1.38577 0.99248 1.23805 0.87219 0.88929 0.97521 1.21474 1.10016 0.98407 0.95369 1.18086 0.77961 0.84664 0.83528 1.90794 1.49090 1.21174 1.82913 1.47795 1.51089 1.24441 1.09693 1.22207 0.98262 0.83341 1.03487 1.21663 0.99551 0.98150 0.81077 1.22454 0.96999 1.00388 0.88200 1.62020 1.35428 1.11693 1.16297 1.22605 0.89292 1.00103 0.95818 1.20597 0.98263 0.83495 0.91446 1.44346 1.32211 1.04108 1.53376 1.19486 1.28006 0.92640 0.99491 0.91995 1.25924 1.02786 0.99113 0.96590 1.70132 1.46070 1.23651 1.18164 0.85226 0.78719 0.79053 0.77177 1.21252 1.21718 1.19433 1.21141 0.89540 0.97532 0.89871 1.22583 0.99954 0.87661 0.97701 0.91645 0.90186 0.93159 0.88552 0.89399 0.75005 0.79006 0.90355 0.91099 0.88054 0.90811 0.86936 0.88823 0.97049 0.89736 0.97203 0.92654 0.97676 0.93964 0.92484 0.95785 0.97186 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.89 71.98 0.71 -1.15 16 2 C -0.10 -1.75 5.99 29.85 0.18 -1.57 16 3 C 0.22 4.23 6.12 42.92 0.26 4.49 16 4 N -0.53 -9.29 10.36 -187.06 -1.94 -11.23 16 5 C 0.31 4.30 12.27 180.84 2.22 6.52 16 6 N -0.53 -8.16 10.42 -198.97 -2.07 -10.24 16 7 C 0.19 2.88 9.53 85.06 0.81 3.69 16 8 C -0.25 -4.57 4.65 -19.91 -0.09 -4.67 16 9 C 0.57 12.72 6.71 86.78 0.58 13.30 16 10 O -0.56 -17.22 14.56 -3.88 -0.06 -17.27 16 11 N -0.60 -10.39 2.87 -850.20 -2.44 -12.83 16 12 C 0.07 0.63 9.20 127.77 1.17 1.80 16 13 C 0.12 2.48 4.74 86.38 0.41 2.88 16 14 C 0.05 1.25 5.59 86.30 0.48 1.73 16 15 N -0.53 -17.91 4.78 -895.25 -4.28 -22.19 16 16 C 0.05 2.02 5.58 86.38 0.48 2.51 16 17 C 0.19 9.39 5.36 86.35 0.46 9.85 16 18 N -0.62 -32.33 3.03 -698.14 -2.11 -34.44 16 19 C -0.27 -15.13 9.62 84.03 0.81 -14.33 16 20 H 0.06 3.46 7.85 -2.91 -0.02 3.44 16 21 C -0.05 -2.77 5.07 84.86 0.43 -2.34 16 22 N -0.93 -55.91 11.05 21.65 0.24 -55.67 16 23 Si 0.97 45.75 29.57 68.60 2.03 47.77 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 27 C 0.14 6.24 6.69 86.35 0.58 6.82 16 28 C 0.05 1.79 5.04 86.39 0.44 2.22 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.09 1.98 5.58 -2.38 -0.01 1.97 16 34 H 0.23 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.19 1.97 6.97 -2.91 -0.02 1.95 16 36 H 0.08 0.49 7.13 -2.38 -0.02 0.47 16 37 H 0.07 0.60 6.99 -2.39 -0.02 0.59 16 38 H 0.10 0.63 7.83 -2.39 -0.02 0.62 16 39 H 0.07 1.88 5.39 -2.39 -0.01 1.87 16 40 H 0.11 1.91 7.86 -2.39 -0.02 1.89 16 41 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.01 0.34 8.08 -2.39 -0.02 0.32 16 43 H 0.08 2.89 8.11 -2.39 -0.02 2.88 16 44 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 45 H 0.06 3.10 6.23 -2.39 -0.01 3.08 16 46 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 47 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 48 H 0.06 2.39 7.95 -2.39 -0.02 2.37 16 49 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 51 H 0.10 2.88 5.73 -2.39 -0.01 2.87 16 Total: -1.00 -74.08 401.35 0.23 -73.85 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.93 Total: 10.48 kcal Atomic # 6 Polarization: 21.84 SS G_CDS: 9.94 Total: 31.77 kcal Atomic # 7 Polarization: -134.00 SS G_CDS: -12.61 Total: -146.60 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.06 Total: -17.27 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -74.08 0.23 -73.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481473764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.313 kcal (2) G-P(sol) polarization free energy of solvation -74.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds