Wall clock time and date at job start Wed Apr 1 2020 06:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47113 * 2 1 4 4 N 1.46497 * 109.46115 * 304.41074 * 3 2 1 5 5 C 1.36936 * 120.00486 * 296.29214 * 4 3 2 6 6 H 1.08004 * 119.99638 * 4.64414 * 5 4 3 7 7 C 1.38807 * 120.00316 * 184.64218 * 5 4 3 8 8 N 1.31621 * 119.99927 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00130 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47111 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47331 * 120.00104 * 9 7 5 12 12 H 1.48507 * 109.47104 * 240.00241 * 9 7 5 13 13 C 1.53045 * 109.45836 * 184.45402 * 3 2 1 14 14 C 1.53189 * 109.31143 * 178.61894 * 13 3 2 15 15 N 1.46924 * 108.77863 * 54.63140 * 14 13 3 16 16 C 1.34779 * 120.63178 * 126.41272 * 15 14 13 17 17 O 1.21273 * 120.00148 * 175.27003 * 16 15 14 18 18 C 1.50704 * 119.99839 * 355.27473 * 16 15 14 19 19 H 1.09005 * 109.68833 * 37.94809 * 18 16 15 20 20 C 1.53434 * 109.69053 * 277.40745 * 18 16 15 21 21 C 1.53110 * 109.55499 * 190.56398 * 20 18 16 22 22 C 1.53428 * 109.57794 * 70.05246 * 21 20 18 23 23 C 1.50598 * 108.33521 * 310.17271 * 22 21 20 24 24 N 1.32912 * 129.16674 * 196.54394 * 23 22 21 25 25 N 1.29011 * 108.63734 * 179.88050 * 24 23 22 26 26 N 1.29110 * 110.25899 * 0.02754 * 25 24 23 27 27 H 0.97002 * 126.00385 * 180.02562 * 26 25 24 28 28 C 1.34340 * 108.00351 * 0.03952 * 26 25 24 29 29 C 1.46924 * 118.73939 * 306.39097 * 15 14 13 30 30 C 1.53036 * 109.45747 * 64.38799 * 3 2 1 31 31 H 1.09006 * 109.46947 * 298.49140 * 1 2 3 32 32 H 1.09000 * 109.47756 * 58.48649 * 1 2 3 33 33 H 1.08992 * 109.47495 * 178.49183 * 1 2 3 34 34 H 1.09003 * 109.46685 * 240.00510 * 2 1 3 35 35 H 1.08993 * 109.47425 * 120.00502 * 2 1 3 36 36 H 0.97003 * 120.00188 * 116.29427 * 4 3 2 37 37 H 0.97003 * 119.99815 * 179.97438 * 8 7 5 38 38 H 1.09005 * 109.49533 * 298.56634 * 13 3 2 39 39 H 1.09000 * 109.49817 * 58.66640 * 13 3 2 40 40 H 1.09010 * 109.58727 * 294.84285 * 14 13 3 41 41 H 1.09005 * 109.58704 * 174.42457 * 14 13 3 42 42 H 1.08997 * 109.45922 * 310.58672 * 20 18 16 43 43 H 1.08994 * 109.46209 * 70.54034 * 20 18 16 44 44 H 1.08996 * 109.45813 * 190.08632 * 21 20 18 45 45 H 1.09007 * 109.45134 * 310.04586 * 21 20 18 46 46 H 1.09000 * 109.68997 * 69.88839 * 22 21 20 47 47 H 1.09000 * 109.68642 * 190.42895 * 22 21 20 48 48 H 1.08995 * 109.58883 * 293.82262 * 29 15 14 49 49 H 1.08994 * 109.58721 * 173.39400 * 29 15 14 50 50 H 1.09000 * 109.49810 * 301.33227 * 30 3 2 51 51 H 1.08992 * 109.50030 * 61.43216 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4667 2.1629 -1.1396 5 6 1.7674 1.7733 -2.4174 6 1 2.3659 0.8902 -2.5860 7 6 1.3029 2.5132 -3.4961 8 7 0.5738 3.5896 -3.2907 9 14 1.7125 1.9812 -5.2393 10 1 2.5397 0.7487 -5.1992 11 1 0.4557 1.7105 -5.9825 12 1 2.4682 3.0620 -5.9220 13 6 3.5663 1.4436 -0.1121 14 6 4.0707 2.8897 -0.1465 15 7 3.5515 3.5999 1.0302 16 6 4.3869 4.2529 1.8622 17 8 3.9397 4.9063 2.7808 18 6 5.8768 4.1712 1.6508 19 1 6.0974 4.1813 0.5833 20 6 6.4180 2.8799 2.2784 21 6 7.9484 2.9217 2.2974 22 6 8.4216 3.9642 3.3189 23 6 7.6793 5.2492 3.0628 24 7 7.9592 6.4785 3.4836 25 7 7.0606 7.2846 3.0287 26 7 6.1951 6.6369 2.3227 27 1 5.4246 7.0189 1.8740 28 6 6.5488 5.3409 2.3188 29 6 2.1041 3.5850 1.2826 30 6 1.6218 2.1311 1.3012 31 1 -0.3633 0.4903 0.9033 32 1 -0.3634 0.5371 -0.8761 33 1 -0.3634 -1.0272 -0.0270 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 0.8741 2.9159 -0.9890 37 1 0.2495 4.1068 -4.0445 38 1 3.9946 0.9293 0.7483 39 1 3.8642 0.9325 -1.0275 40 1 3.7165 3.3787 -1.0541 41 1 5.1605 2.8972 -0.1265 42 1 6.0446 2.7877 3.2982 43 1 6.0855 2.0238 1.6914 44 1 8.3349 1.9408 2.5742 45 1 8.3166 3.1909 1.3074 46 1 8.2091 3.6121 4.3283 47 1 9.4930 4.1294 3.2054 48 1 1.5896 4.1306 0.4917 49 1 1.8964 4.0512 2.2457 50 1 0.5358 2.1092 1.3916 51 1 2.0684 1.6104 2.1481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484815423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:09 Heat of formation + Delta-G solvation = 59.556158 kcal Electronic energy + Delta-G solvation = -32667.774140 eV Core-core repulsion = 28603.802660 eV Total energy + Delta-G solvation = -4063.971480 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.54426 -40.38104 -38.35820 -36.95077 -34.94150 -33.88576 -32.73884 -31.37355 -30.61080 -30.34876 -29.86505 -29.10653 -25.53483 -24.61533 -23.91033 -23.38089 -22.86407 -22.56813 -21.65834 -20.05598 -19.55712 -18.38546 -17.84594 -17.40595 -17.15670 -16.11336 -15.65784 -15.41092 -15.07117 -14.65340 -14.36588 -14.25467 -14.06880 -13.96764 -13.81633 -13.77794 -13.51337 -13.20828 -12.91665 -12.45674 -12.38867 -12.18582 -11.86533 -11.68362 -11.56531 -11.51898 -11.38361 -11.28263 -11.20053 -10.99623 -10.88918 -10.75350 -10.71635 -10.46649 -10.41250 -10.28832 -10.19959 -9.74888 -9.71084 -9.49985 -9.05495 -8.95659 -8.38614 -7.05790 -5.88491 -3.17240 1.48433 2.42257 2.51253 2.67881 3.08703 3.33037 3.39427 3.42387 4.00955 4.29013 4.37185 4.47643 4.53003 4.64872 4.83245 4.95594 5.07244 5.12033 5.20440 5.21854 5.23484 5.41535 5.46139 5.46819 5.54551 5.58684 5.62919 5.65785 5.76564 5.81371 5.85308 5.86402 5.97582 6.00245 6.03723 6.08704 6.10144 6.12927 6.30796 6.38645 6.45255 6.53298 6.64964 6.73920 6.76889 6.83864 6.94194 7.07770 7.53815 7.61660 8.13981 8.29752 8.39098 9.41776 9.98034 10.33510 11.33595 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013811 B = 0.003192 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.860477 B = 8768.575526 C = 9263.402756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.202 3.798 4 N -0.713 5.713 5 C -0.231 4.231 6 H 0.070 0.930 7 C -0.010 4.010 8 N -0.930 5.930 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.133 4.133 14 C 0.109 3.891 15 N -0.589 5.589 16 C 0.512 3.488 17 O -0.551 6.551 18 C -0.037 4.037 19 H 0.115 0.885 20 C -0.105 4.105 21 C -0.117 4.117 22 C -0.033 4.033 23 C -0.017 4.017 24 N -0.263 5.263 25 N -0.090 5.090 26 N -0.365 5.365 27 H 0.449 0.551 28 C 0.015 3.985 29 C 0.115 3.885 30 C -0.130 4.130 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.059 0.941 35 H 0.040 0.960 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.077 0.923 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.764 -4.000 9.934 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.111 3.889 4 N -0.355 5.355 5 C -0.363 4.363 6 H 0.088 0.912 7 C -0.206 4.206 8 N -0.578 5.578 9 Si 0.730 3.270 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.221 1.221 13 C -0.173 4.173 14 C -0.013 4.013 15 N -0.320 5.320 16 C 0.298 3.702 17 O -0.430 6.430 18 C -0.060 4.060 19 H 0.133 0.867 20 C -0.143 4.143 21 C -0.155 4.155 22 C -0.072 4.072 23 C -0.157 4.157 24 N -0.128 5.128 25 N -0.069 5.069 26 N -0.083 5.083 27 H 0.295 0.705 28 C -0.122 4.122 29 C -0.007 4.007 30 C -0.169 4.169 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.218 0.782 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.095 0.905 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.109 -2.333 10.865 15.713 hybrid contribution -1.051 -0.758 -1.921 2.317 sum 10.058 -3.091 8.944 13.810 Atomic orbital electron populations 1.21660 0.96112 0.99779 1.02312 1.21915 0.96413 0.98106 0.99952 1.19535 0.90734 0.91214 0.87447 1.42474 1.55943 1.36801 1.00285 1.19115 1.27180 1.07006 0.82956 0.91187 1.24683 1.00870 0.97486 0.97546 1.69656 1.40182 1.18132 1.29854 0.86254 0.77528 0.77554 0.85640 1.20626 1.22030 1.22058 1.22279 0.98669 0.95019 1.01357 1.21903 0.97274 0.93807 0.88304 1.48116 1.07565 1.50711 1.25642 1.20274 0.87879 0.79833 0.82189 1.90701 1.78049 1.42023 1.32239 1.20040 0.91930 0.92531 1.01520 0.86698 1.21583 0.96116 0.94343 1.02258 1.21652 0.94583 0.99385 0.99911 1.19978 0.99150 0.88001 1.00113 1.21644 0.97026 0.95542 1.01527 1.74781 1.18625 1.00101 1.19317 1.78538 0.98451 1.20554 1.09355 1.44609 1.22255 1.06186 1.35211 0.70488 1.21212 0.98858 0.86518 1.05650 1.21626 0.79128 0.97591 1.02319 1.22123 1.01494 0.95137 0.98113 0.94091 0.90667 0.94765 0.92224 0.94120 0.78191 0.93613 0.93211 0.90409 0.88668 0.91207 0.90484 0.89455 0.89904 0.90946 0.89841 0.89619 0.90230 0.90040 0.90479 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.44 37.15 0.35 -1.89 16 2 C -0.12 -1.92 4.79 -26.73 -0.13 -2.05 16 3 C 0.20 3.20 0.44 -131.78 -0.06 3.15 16 4 N -0.71 -14.37 3.10 -47.20 -0.15 -14.51 16 5 C -0.23 -5.35 8.61 -15.06 -0.13 -5.48 16 6 H 0.07 1.60 6.76 -52.48 -0.35 1.25 16 7 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 8 N -0.93 -25.30 13.06 55.49 0.72 -24.57 16 9 Si 0.90 20.49 29.55 -169.99 -5.02 15.46 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 C -0.13 -1.87 4.65 -26.61 -0.12 -1.99 16 14 C 0.11 1.47 5.92 -3.71 -0.02 1.45 16 15 N -0.59 -8.16 2.97 -172.77 -0.51 -8.67 16 16 C 0.51 7.03 6.81 -10.98 -0.07 6.95 16 17 O -0.55 -9.30 15.37 5.56 0.09 -9.22 16 18 C -0.04 -0.40 2.01 -92.78 -0.19 -0.58 16 19 H 0.12 1.07 6.46 -51.93 -0.34 0.74 16 20 C -0.10 -0.90 5.11 -26.45 -0.14 -1.04 16 21 C -0.12 -0.81 5.90 -26.45 -0.16 -0.97 16 22 C -0.03 -0.29 6.30 -27.71 -0.17 -0.47 16 23 C -0.02 -0.21 7.11 -83.10 -0.59 -0.81 16 24 N -0.26 -3.99 12.40 33.17 0.41 -3.58 16 25 N -0.09 -1.36 13.40 60.35 0.81 -0.55 16 26 N -0.36 -4.80 6.57 33.39 0.22 -4.58 16 27 H 0.45 5.08 8.96 -190.07 -1.70 3.38 16 28 C 0.01 0.18 5.95 -82.50 -0.49 -0.31 16 29 C 0.12 1.73 6.15 -3.71 -0.02 1.71 16 30 C -0.13 -1.86 4.72 -26.61 -0.13 -1.99 16 31 H 0.04 0.59 6.59 -51.93 -0.34 0.25 16 32 H 0.07 1.43 7.44 -51.93 -0.39 1.05 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 1.01 7.54 -51.93 -0.39 0.61 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.38 8.60 6.60 -40.82 -0.27 8.34 16 37 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.18 7.21 -51.93 -0.37 0.80 16 40 H 0.10 1.62 7.63 -51.92 -0.40 1.22 16 41 H 0.07 0.73 4.99 -51.93 -0.26 0.47 16 42 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 43 H 0.09 0.66 7.56 -51.93 -0.39 0.27 16 44 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.08 1.35 7.01 -51.93 -0.36 0.99 16 49 H 0.08 1.24 7.03 -51.93 -0.37 0.88 16 50 H 0.08 1.11 6.52 -51.93 -0.34 0.77 16 51 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -29.62 386.95 -8.97 -38.60 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -9.21 Total: 10.45 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.16 Total: -4.65 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 1.50 Total: -56.48 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.62 -8.97 -38.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484815423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.154 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds