Wall clock time and date at job start Wed Apr 1 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47113 * 2 1 4 4 N 1.46497 * 109.46115 * 304.41074 * 3 2 1 5 5 C 1.36936 * 120.00486 * 296.29214 * 4 3 2 6 6 H 1.08004 * 119.99638 * 4.64414 * 5 4 3 7 7 C 1.38807 * 120.00316 * 184.64218 * 5 4 3 8 8 N 1.31621 * 119.99927 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00130 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47111 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47331 * 120.00104 * 9 7 5 12 12 H 1.48507 * 109.47104 * 240.00241 * 9 7 5 13 13 C 1.53045 * 109.45836 * 184.45402 * 3 2 1 14 14 C 1.53189 * 109.31143 * 178.61894 * 13 3 2 15 15 N 1.46924 * 108.77863 * 54.63140 * 14 13 3 16 16 C 1.34779 * 120.63178 * 126.41272 * 15 14 13 17 17 O 1.21273 * 120.00148 * 175.27003 * 16 15 14 18 18 C 1.50704 * 119.99839 * 355.27473 * 16 15 14 19 19 H 1.09005 * 109.68833 * 37.94809 * 18 16 15 20 20 C 1.53434 * 109.69053 * 277.40745 * 18 16 15 21 21 C 1.53110 * 109.55499 * 190.56398 * 20 18 16 22 22 C 1.53428 * 109.57794 * 70.05246 * 21 20 18 23 23 C 1.50598 * 108.33521 * 310.17271 * 22 21 20 24 24 N 1.32912 * 129.16674 * 196.54394 * 23 22 21 25 25 N 1.29011 * 108.63734 * 179.88050 * 24 23 22 26 26 N 1.29110 * 110.25899 * 0.02754 * 25 24 23 27 27 H 0.97002 * 126.00385 * 180.02562 * 26 25 24 28 28 C 1.34340 * 108.00351 * 0.03952 * 26 25 24 29 29 C 1.46924 * 118.73939 * 306.39097 * 15 14 13 30 30 C 1.53036 * 109.45747 * 64.38799 * 3 2 1 31 31 H 1.09006 * 109.46947 * 298.49140 * 1 2 3 32 32 H 1.09000 * 109.47756 * 58.48649 * 1 2 3 33 33 H 1.08992 * 109.47495 * 178.49183 * 1 2 3 34 34 H 1.09003 * 109.46685 * 240.00510 * 2 1 3 35 35 H 1.08993 * 109.47425 * 120.00502 * 2 1 3 36 36 H 0.97003 * 120.00188 * 116.29427 * 4 3 2 37 37 H 0.97003 * 119.99815 * 179.97438 * 8 7 5 38 38 H 1.09005 * 109.49533 * 298.56634 * 13 3 2 39 39 H 1.09000 * 109.49817 * 58.66640 * 13 3 2 40 40 H 1.09010 * 109.58727 * 294.84285 * 14 13 3 41 41 H 1.09005 * 109.58704 * 174.42457 * 14 13 3 42 42 H 1.08997 * 109.45922 * 310.58672 * 20 18 16 43 43 H 1.08994 * 109.46209 * 70.54034 * 20 18 16 44 44 H 1.08996 * 109.45813 * 190.08632 * 21 20 18 45 45 H 1.09007 * 109.45134 * 310.04586 * 21 20 18 46 46 H 1.09000 * 109.68997 * 69.88839 * 22 21 20 47 47 H 1.09000 * 109.68642 * 190.42895 * 22 21 20 48 48 H 1.08995 * 109.58883 * 293.82262 * 29 15 14 49 49 H 1.08994 * 109.58721 * 173.39400 * 29 15 14 50 50 H 1.09000 * 109.49810 * 301.33227 * 30 3 2 51 51 H 1.08992 * 109.50030 * 61.43216 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4667 2.1629 -1.1396 5 6 1.7674 1.7733 -2.4174 6 1 2.3659 0.8902 -2.5860 7 6 1.3029 2.5132 -3.4961 8 7 0.5738 3.5896 -3.2907 9 14 1.7125 1.9812 -5.2393 10 1 2.5397 0.7487 -5.1992 11 1 0.4557 1.7105 -5.9825 12 1 2.4682 3.0620 -5.9220 13 6 3.5663 1.4436 -0.1121 14 6 4.0707 2.8897 -0.1465 15 7 3.5515 3.5999 1.0302 16 6 4.3869 4.2529 1.8622 17 8 3.9397 4.9063 2.7808 18 6 5.8768 4.1712 1.6508 19 1 6.0974 4.1813 0.5833 20 6 6.4180 2.8799 2.2784 21 6 7.9484 2.9217 2.2974 22 6 8.4216 3.9642 3.3189 23 6 7.6793 5.2492 3.0628 24 7 7.9592 6.4785 3.4836 25 7 7.0606 7.2846 3.0287 26 7 6.1951 6.6369 2.3227 27 1 5.4246 7.0189 1.8740 28 6 6.5488 5.3409 2.3188 29 6 2.1041 3.5850 1.2826 30 6 1.6218 2.1311 1.3012 31 1 -0.3633 0.4903 0.9033 32 1 -0.3634 0.5371 -0.8761 33 1 -0.3634 -1.0272 -0.0270 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 0.8741 2.9159 -0.9890 37 1 0.2495 4.1068 -4.0445 38 1 3.9946 0.9293 0.7483 39 1 3.8642 0.9325 -1.0275 40 1 3.7165 3.3787 -1.0541 41 1 5.1605 2.8972 -0.1265 42 1 6.0446 2.7877 3.2982 43 1 6.0855 2.0238 1.6914 44 1 8.3349 1.9408 2.5742 45 1 8.3166 3.1909 1.3074 46 1 8.2091 3.6121 4.3283 47 1 9.4930 4.1294 3.2054 48 1 1.5896 4.1306 0.4917 49 1 1.8964 4.0512 2.2457 50 1 0.5358 2.1092 1.3916 51 1 2.0684 1.6104 2.1481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484815423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:08 Heat of formation + Delta-G solvation = 40.970852 kcal Electronic energy + Delta-G solvation = -32668.580060 eV Core-core repulsion = 28603.802660 eV Total energy + Delta-G solvation = -4064.777399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.54315 -41.52047 -39.58747 -37.77283 -36.24320 -34.89451 -34.43103 -32.44626 -31.84039 -31.25843 -31.02276 -30.53915 -26.69677 -25.62437 -25.55906 -24.48541 -23.77138 -23.62037 -22.82478 -21.07182 -20.49479 -19.64365 -18.94847 -18.80696 -18.50937 -17.17852 -16.76709 -16.59513 -16.26105 -15.86983 -15.58674 -15.35345 -15.32414 -15.16536 -14.88400 -14.73813 -14.55292 -14.41152 -14.12771 -13.88926 -13.43785 -13.17726 -13.00775 -12.86476 -12.81645 -12.68529 -12.56432 -12.44187 -12.33885 -12.22467 -12.07497 -11.98753 -11.93959 -11.76420 -11.57775 -11.51231 -11.36834 -11.32963 -10.93746 -10.82585 -10.67255 -9.93683 -9.61785 -8.80015 -7.81024 -5.04934 0.47975 1.42049 1.44086 1.49890 1.53751 1.59920 1.74062 1.98862 2.64776 3.11523 3.40539 3.48213 3.54667 3.75835 3.85187 3.92586 3.97332 4.02076 4.13502 4.22133 4.28392 4.31820 4.33895 4.45993 4.49598 4.63659 4.65177 4.67230 4.75685 4.80764 4.86120 4.90528 4.95638 5.00011 5.09994 5.12376 5.18507 5.21361 5.25054 5.30071 5.34171 5.40739 5.44379 5.46729 5.59503 5.68311 5.71105 5.79046 5.80321 6.41324 6.43382 7.03531 7.35935 7.49249 8.26973 8.49087 9.42717 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013811 B = 0.003192 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.860477 B = 8768.575526 C = 9263.402756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.194 3.806 4 N -0.718 5.718 5 C -0.195 4.195 6 H 0.078 0.922 7 C -0.074 4.074 8 N -0.970 5.970 9 Si 0.947 3.053 10 H -0.264 1.264 11 H -0.309 1.309 12 H -0.304 1.304 13 C -0.129 4.129 14 C 0.114 3.886 15 N -0.587 5.587 16 C 0.514 3.486 17 O -0.585 6.585 18 C -0.030 4.030 19 H 0.135 0.865 20 C -0.103 4.103 21 C -0.109 4.109 22 C -0.036 4.036 23 C -0.020 4.020 24 N -0.291 5.291 25 N -0.120 5.120 26 N -0.364 5.364 27 H 0.453 0.547 28 C 0.009 3.991 29 C 0.119 3.881 30 C -0.120 4.120 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.369 0.631 37 H 0.242 0.758 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.050 0.950 49 H 0.077 0.923 50 H 0.073 0.927 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.088 -7.090 11.036 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.104 3.896 4 N -0.357 5.357 5 C -0.328 4.328 6 H 0.096 0.904 7 C -0.266 4.266 8 N -0.623 5.623 9 Si 0.780 3.220 10 H -0.188 1.188 11 H -0.238 1.238 12 H -0.233 1.233 13 C -0.168 4.168 14 C -0.008 4.008 15 N -0.317 5.317 16 C 0.302 3.698 17 O -0.467 6.467 18 C -0.053 4.053 19 H 0.153 0.847 20 C -0.141 4.141 21 C -0.147 4.147 22 C -0.075 4.075 23 C -0.161 4.161 24 N -0.156 5.156 25 N -0.098 5.098 26 N -0.083 5.083 27 H 0.300 0.700 28 C -0.129 4.129 29 C -0.003 4.003 30 C -0.158 4.158 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.202 0.798 37 H 0.051 0.949 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.116 0.884 48 H 0.069 0.931 49 H 0.096 0.904 50 H 0.091 0.909 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.479 -5.471 11.990 18.851 hybrid contribution -1.794 0.161 -2.140 2.797 sum 11.684 -5.310 9.851 16.179 Atomic orbital electron populations 1.21593 0.96678 1.00218 1.00985 1.21877 0.95855 0.97444 1.00793 1.19859 0.92124 0.91188 0.86453 1.42624 1.55756 1.36575 1.00776 1.19393 1.23918 1.05536 0.83937 0.90374 1.25223 1.02657 0.98396 1.00275 1.69797 1.42971 1.19898 1.29596 0.85433 0.76539 0.77389 0.82629 1.18788 1.23780 1.23256 1.22228 0.96709 0.95380 1.02526 1.21853 0.99402 0.93030 0.86478 1.48099 1.06999 1.50838 1.25779 1.20762 0.89054 0.78648 0.81311 1.90694 1.78912 1.43296 1.33764 1.20181 0.89263 0.93133 1.02743 0.84731 1.21680 0.97321 0.93277 1.01827 1.21668 0.93104 1.00107 0.99774 1.20223 0.99482 0.86560 1.01251 1.22374 0.97220 0.96031 1.00462 1.74745 1.19207 1.01402 1.20244 1.78494 0.99311 1.21310 1.10677 1.44690 1.22081 1.06704 1.34799 0.70034 1.21628 0.99035 0.86552 1.05671 1.21436 0.80034 0.97898 1.00966 1.22038 1.01442 0.94410 0.97920 0.92944 0.94625 0.93304 0.93545 0.90972 0.79822 0.94922 0.89780 0.91102 0.92571 0.87334 0.91448 0.87319 0.86953 0.90062 0.89182 0.88444 0.93126 0.90429 0.90894 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.44 71.98 0.68 -3.43 16 2 C -0.12 -3.35 4.79 30.59 0.15 -3.21 16 3 C 0.19 5.69 0.44 3.63 0.00 5.69 16 4 N -0.72 -28.78 3.10 -303.23 -0.94 -29.73 16 5 C -0.20 -8.97 8.61 84.03 0.72 -8.24 16 6 H 0.08 3.44 6.76 -2.91 -0.02 3.42 16 7 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 8 N -0.97 -54.80 13.06 21.65 0.28 -54.51 16 9 Si 0.95 42.70 29.55 68.60 2.03 44.73 16 10 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 13 C -0.13 -3.13 4.65 30.67 0.14 -2.98 16 14 C 0.11 2.78 5.92 86.36 0.51 3.29 16 15 N -0.59 -15.18 2.97 -818.90 -2.43 -17.62 16 16 C 0.51 13.15 6.81 87.66 0.60 13.75 16 17 O -0.59 -19.34 15.37 -3.01 -0.05 -19.39 16 18 C -0.03 -0.56 2.01 -12.19 -0.02 -0.58 16 19 H 0.14 1.99 6.46 -2.38 -0.02 1.97 16 20 C -0.10 -1.30 5.11 30.78 0.16 -1.14 16 21 C -0.11 -0.98 5.90 30.77 0.18 -0.80 16 22 C -0.04 -0.52 6.30 29.96 0.19 -0.33 16 23 C -0.02 -0.46 7.11 41.76 0.30 -0.17 16 24 N -0.29 -8.75 12.40 -48.96 -0.61 -9.35 16 25 N -0.12 -3.65 13.40 37.02 0.50 -3.16 16 26 N -0.36 -9.55 6.57 -48.27 -0.32 -9.87 16 27 H 0.45 10.47 8.96 -219.68 -1.97 8.51 16 28 C 0.01 0.21 5.95 41.52 0.25 0.45 16 29 C 0.12 3.52 6.15 86.37 0.53 4.05 16 30 C -0.12 -3.18 4.72 30.67 0.14 -3.03 16 31 H 0.05 1.43 6.59 -2.38 -0.02 1.41 16 32 H 0.03 1.34 7.44 -2.39 -0.02 1.32 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.42 7.54 -2.39 -0.02 1.41 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.37 17.04 6.60 -92.71 -0.61 16.43 16 37 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 38 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.07 1.87 7.21 -2.39 -0.02 1.86 16 40 H 0.06 1.86 7.63 -2.38 -0.02 1.84 16 41 H 0.11 1.79 4.99 -2.38 -0.01 1.78 16 42 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 43 H 0.11 0.96 7.56 -2.39 -0.02 0.94 16 44 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.08 0.65 8.12 -2.38 -0.02 0.63 16 46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.05 1.79 7.01 -2.39 -0.02 1.77 16 49 H 0.08 2.35 7.03 -2.39 -0.02 2.33 16 50 H 0.07 2.00 6.52 -2.39 -0.02 1.99 16 51 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -67.67 386.95 1.85 -65.82 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -1.61 Total: 33.07 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 4.99 Total: 0.00 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -3.52 Total: -124.23 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.05 Total: -19.39 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -67.67 1.85 -65.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484815423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.790 kcal (2) G-P(sol) polarization free energy of solvation -67.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds