Wall clock time and date at job start Wed Apr 1 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30835 * 126.46257 * 2 1 4 4 N 1.28914 * 109.74080 * 179.82831 * 3 2 1 5 5 C 1.29834 * 109.47334 * 0.39624 * 4 3 2 6 6 N 1.34688 * 126.46266 * 180.31839 * 2 1 3 7 7 C 1.46252 * 128.85074 * 0.10136 * 6 2 1 8 8 C 1.53316 * 108.73366 * 162.93275 * 7 6 2 9 9 H 1.08996 * 109.43651 * 290.24319 * 8 7 6 10 10 C 1.50702 * 109.45248 * 170.30112 * 8 7 6 11 11 O 1.21287 * 119.99760 * 359.88586 * 10 8 7 12 12 N 1.34777 * 120.00186 * 179.88282 * 10 8 7 13 13 C 1.46497 * 120.00020 * 175.67785 * 12 10 8 14 14 C 1.52999 * 109.47178 * 174.06292 * 13 12 10 15 15 C 1.52998 * 109.47502 * 54.06132 * 13 12 10 16 16 N 1.46505 * 109.47046 * 59.99692 * 15 13 12 17 17 C 1.36934 * 119.99935 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00303 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99638 * 179.97438 * 17 16 15 20 20 N 1.31612 * 120.00394 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99840 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46962 * 90.00411 * 21 19 17 23 23 H 1.48501 * 109.47503 * 210.00412 * 21 19 17 24 24 H 1.48497 * 109.47223 * 330.00684 * 21 19 17 25 25 C 1.52997 * 109.47087 * 294.06082 * 13 12 10 26 26 C 1.53001 * 117.49887 * 2.17565 * 25 13 12 27 27 C 1.53000 * 117.50160 * 293.51385 * 25 13 12 28 28 C 1.53137 * 109.58514 * 50.27059 * 8 7 6 29 29 C 1.50797 * 128.51879 * 179.88647 * 5 4 3 30 30 H 1.08999 * 109.46930 * 269.68096 * 1 2 3 31 31 H 1.08999 * 109.47221 * 149.67818 * 1 2 3 32 32 H 1.08998 * 109.46979 * 29.68558 * 1 2 3 33 33 H 1.09011 * 109.59180 * 282.71102 * 7 6 2 34 34 H 1.08999 * 109.59636 * 43.15788 * 7 6 2 35 35 H 0.96995 * 119.99907 * 355.67989 * 12 10 8 36 36 H 1.09001 * 109.47101 * 59.99848 * 14 13 12 37 37 H 1.09003 * 109.47400 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47197 * 300.00108 * 14 13 12 39 39 H 1.08999 * 109.47628 * 180.02562 * 15 13 12 40 40 H 1.09007 * 109.46947 * 300.00531 * 15 13 12 41 41 H 0.96996 * 119.99622 * 0.02562 * 16 15 13 42 42 H 0.97003 * 120.00555 * 179.97438 * 20 19 17 43 43 H 1.08999 * 115.55367 * 147.84035 * 25 13 12 44 44 H 1.08991 * 117.50102 * 359.97438 * 26 25 13 45 45 H 1.09008 * 117.49827 * 145.02209 * 26 25 13 46 46 H 1.08994 * 117.50130 * 214.97754 * 27 25 13 47 47 H 1.09002 * 117.49397 * 359.97438 * 27 25 13 48 48 H 1.09000 * 109.49937 * 170.61603 * 28 8 7 49 49 H 1.08999 * 109.50332 * 50.50894 * 28 8 7 50 50 H 1.09002 * 109.73147 * 283.69230 * 29 5 4 51 51 H 1.09003 * 109.73286 * 44.37950 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6813 0.0036 5 6 3.5816 -0.6155 -0.0024 6 7 2.3075 -1.0832 -0.0060 7 6 1.9367 -2.4979 -0.0159 8 6 3.1551 -3.3233 -0.4458 9 1 3.3619 -3.1424 -1.5005 10 6 2.8691 -4.7878 -0.2345 11 8 1.7991 -5.1377 0.2169 12 7 3.8023 -5.7086 -0.5470 13 6 3.5619 -7.1237 -0.2541 14 6 4.6991 -7.9654 -0.8365 15 6 2.2348 -7.5561 -0.8807 16 7 2.2932 -7.3608 -2.3315 17 6 1.2126 -7.6804 -3.1094 18 1 0.3170 -8.0760 -2.6535 19 6 1.2678 -7.4948 -4.4840 20 7 2.3589 -7.0122 -5.0396 21 14 -0.2061 -7.9314 -5.5453 22 1 -1.0936 -6.7474 -5.6711 23 1 0.2597 -8.3463 -6.8929 24 1 -0.9563 -9.0476 -4.9156 25 6 3.5009 -7.3276 1.2610 26 6 3.6388 -6.0878 2.1468 27 6 4.7867 -7.0965 2.0574 28 6 4.3720 -2.9157 0.3898 29 6 4.8052 -1.4969 -0.0036 30 1 -0.3633 -0.0057 1.0277 31 1 -0.3633 -0.8871 -0.5188 32 1 -0.3633 0.8928 -0.5089 33 1 1.6240 -2.8008 0.9835 34 1 1.1204 -2.6570 -0.7205 35 1 4.6330 -5.4344 -0.9659 36 1 5.6446 -7.6575 -0.3901 37 1 4.5205 -9.0183 -0.6182 38 1 4.7426 -7.8202 -1.9159 39 1 2.0557 -8.6089 -0.6623 40 1 1.4246 -6.9564 -0.4658 41 1 3.0974 -7.0051 -2.7409 42 1 2.3976 -6.8828 -6.0002 43 1 2.8327 -8.1182 1.6025 44 1 3.7734 -5.1269 1.6503 45 1 3.0616 -6.0630 3.0713 46 1 4.9643 -7.7348 2.9229 47 1 5.6762 -6.7996 1.5018 48 1 5.1906 -3.6108 0.2035 49 1 4.1103 -2.9360 1.4477 50 1 5.2481 -1.5102 -0.9995 51 1 5.5307 -1.1204 0.7176 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495303476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:04 Heat of formation + Delta-G solvation = 84.727154 kcal Electronic energy + Delta-G solvation = -32476.055076 eV Core-core repulsion = 28413.175093 eV Total energy + Delta-G solvation = -4062.879984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.40759 -40.72103 -38.08954 -36.52106 -35.04362 -34.33847 -33.45337 -32.06544 -31.15533 -30.49465 -29.55194 -27.47294 -26.14261 -25.15907 -23.79541 -23.45748 -22.24661 -21.64117 -21.42386 -20.87619 -19.58362 -19.17622 -17.59314 -17.34268 -16.74188 -16.36832 -15.93116 -15.59403 -15.31126 -14.83964 -14.49422 -14.34079 -14.30554 -14.01874 -13.80396 -13.57071 -13.39534 -13.24564 -12.94403 -12.78668 -12.43411 -12.34012 -12.26890 -12.18064 -11.98089 -11.64291 -11.59645 -11.32978 -11.28996 -11.15600 -10.93810 -10.86967 -10.81252 -10.40634 -10.31625 -10.18778 -10.13042 -9.95429 -9.72632 -9.42372 -9.05215 -8.81321 -8.72688 -6.88012 -5.79317 -3.05166 1.71990 2.28971 2.76225 2.77945 3.21627 3.41224 3.47179 3.48154 3.87265 3.89108 4.11939 4.25860 4.32580 4.38288 4.54783 4.74202 4.77332 4.83489 4.91835 4.95458 5.00027 5.05072 5.14247 5.25381 5.31216 5.32822 5.37669 5.45206 5.46747 5.55333 5.57052 5.60588 5.65204 5.68091 5.70087 5.86483 5.90378 5.94937 6.04951 6.10142 6.13865 6.19312 6.26932 6.50062 6.55376 6.75338 6.81986 7.08625 7.69060 7.71090 8.40176 8.41412 8.66611 9.52140 10.09988 10.45342 11.43920 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008772 B = 0.003911 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.081023 B = 7158.210412 C = 9246.047474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.180 3.820 3 N -0.303 5.303 4 N -0.293 5.293 5 C 0.171 3.829 6 N -0.466 5.466 7 C 0.125 3.875 8 C -0.127 4.127 9 H 0.112 0.888 10 C 0.536 3.464 11 O -0.518 6.518 12 N -0.710 5.710 13 C 0.200 3.800 14 C -0.148 4.148 15 C 0.138 3.862 16 N -0.726 5.726 17 C -0.229 4.229 18 H 0.068 0.932 19 C -0.015 4.015 20 N -0.937 5.937 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.143 4.143 26 C -0.168 4.168 27 C -0.182 4.182 28 C -0.117 4.117 29 C -0.031 4.031 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.396 0.604 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.019 0.981 40 H 0.059 0.941 41 H 0.381 0.619 42 H 0.253 0.747 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.099 0.901 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.314 6.318 14.583 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 N -0.144 5.144 4 N -0.133 5.133 5 C -0.096 4.096 6 N -0.157 5.157 7 C 0.002 3.998 8 C -0.149 4.149 9 H 0.130 0.870 10 C 0.321 3.679 11 O -0.394 6.394 12 N -0.361 5.361 13 C 0.115 3.885 14 C -0.206 4.206 15 C 0.010 3.990 16 N -0.370 5.370 17 C -0.361 4.361 18 H 0.086 0.914 19 C -0.211 4.211 20 N -0.587 5.587 21 Si 0.735 3.265 22 H -0.219 1.219 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.163 4.163 26 C -0.205 4.205 27 C -0.219 4.219 28 C -0.156 4.156 29 C -0.070 4.070 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.230 0.770 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.215 0.785 42 H 0.063 0.937 43 H 0.127 0.873 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.097 0.903 50 H 0.117 0.883 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.771 7.419 14.870 17.591 hybrid contribution -0.620 -1.390 -1.165 1.916 sum 5.151 6.029 13.705 15.833 Atomic orbital electron populations 1.20239 0.83701 1.04764 1.04049 1.24661 0.97135 0.82731 1.04150 1.74464 0.96108 1.23724 1.20129 1.74013 1.12385 1.08073 1.18788 1.24664 0.87126 0.92568 1.05259 1.46014 1.06928 1.08647 1.54122 1.21779 0.97978 0.74920 1.05127 1.21659 0.95837 0.93808 1.03565 0.86970 1.19586 0.84248 0.86355 0.77750 1.90698 1.23321 1.81092 1.44245 1.45910 1.20390 1.06970 1.62820 1.20097 0.97597 0.79468 0.91364 1.21994 0.96096 1.00238 1.02257 1.21202 0.94103 0.97571 0.86103 1.42231 1.16631 1.78110 1.00051 1.19219 0.93563 1.34491 0.88778 0.91397 1.24658 0.97410 1.02406 0.96600 1.69631 1.26861 1.51973 1.10227 0.86228 0.82181 0.77972 0.80076 1.21901 1.21851 1.20815 1.22577 1.00170 1.00763 0.92756 1.22975 1.01736 0.94612 1.01202 1.22966 0.92831 1.03588 1.02467 1.21770 0.97038 0.96405 1.00368 1.20218 0.91214 0.90953 1.04645 0.89579 0.90102 0.88699 0.87980 0.87635 0.76981 0.92863 0.90963 0.90681 0.96288 0.92346 0.78529 0.93699 0.87340 0.88938 0.89544 0.89296 0.89042 0.88986 0.90298 0.88292 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.29 36.01 0.37 -0.24 16 2 C 0.18 2.34 8.07 -155.46 -1.25 1.09 16 3 N -0.30 -4.79 12.23 32.70 0.40 -4.39 16 4 N -0.29 -4.59 12.21 32.76 0.40 -4.19 16 5 C 0.17 2.17 7.75 -155.30 -1.20 0.96 16 6 N -0.47 -5.69 3.11 -110.86 -0.35 -6.04 16 7 C 0.12 1.39 5.48 -4.01 -0.02 1.37 16 8 C -0.13 -1.34 2.53 -91.54 -0.23 -1.57 16 9 H 0.11 1.24 8.12 -51.93 -0.42 0.82 16 10 C 0.54 7.18 4.39 -10.98 -0.05 7.13 16 11 O -0.52 -8.68 12.15 5.55 0.07 -8.61 16 12 N -0.71 -8.92 3.95 -47.61 -0.19 -9.11 16 13 C 0.20 2.85 0.55 -131.82 -0.07 2.77 16 14 C -0.15 -1.94 8.18 37.16 0.30 -1.64 16 15 C 0.14 2.70 4.81 -4.04 -0.02 2.68 16 16 N -0.73 -17.26 5.18 -59.90 -0.31 -17.57 16 17 C -0.23 -6.28 9.99 -15.06 -0.15 -6.43 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 20 N -0.94 -27.34 13.06 55.49 0.72 -26.62 16 21 Si 0.90 22.28 29.55 -169.99 -5.02 17.25 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.14 -1.78 4.89 -90.62 -0.44 -2.22 16 26 C -0.17 -1.88 8.62 -26.69 -0.23 -2.11 16 27 C -0.18 -1.78 9.68 -26.69 -0.26 -2.04 16 28 C -0.12 -0.91 4.51 -26.41 -0.12 -1.02 16 29 C -0.03 -0.26 6.34 -27.59 -0.17 -0.43 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.65 7.76 -51.93 -0.40 0.25 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.11 7.79 -51.92 -0.40 0.70 16 34 H 0.11 1.24 7.85 -51.93 -0.41 0.83 16 35 H 0.40 4.10 7.97 -40.82 -0.33 3.77 16 36 H 0.05 0.55 6.91 -51.93 -0.36 0.19 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.17 6.86 -51.93 -0.36 0.81 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 1.27 5.64 -51.92 -0.29 0.98 16 41 H 0.38 9.27 6.35 -40.82 -0.26 9.01 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.11 1.41 8.06 -51.93 -0.42 0.99 16 44 H 0.09 1.01 4.05 -51.93 -0.21 0.80 16 45 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 0.82 7.20 -51.93 -0.37 0.45 16 48 H 0.09 0.54 7.42 -51.93 -0.39 0.15 16 49 H 0.08 0.62 7.75 -51.93 -0.40 0.22 16 50 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -34.82 395.32 -9.91 -44.73 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -7.95 Total: 10.81 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -3.65 Total: -2.23 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: 0.68 Total: -67.91 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.07 Total: -8.61 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.82 -9.91 -44.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495303476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.461 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds