Wall clock time and date at job start Wed Apr 1 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30834 * 126.46833 * 2 1 4 4 N 1.28907 * 109.74560 * 179.97438 * 3 2 1 5 5 C 1.29833 * 109.47589 * 359.97123 * 4 3 2 6 6 N 1.34698 * 126.46259 * 179.97438 * 2 1 3 7 7 C 1.46254 * 128.84927 * 0.18403 * 6 2 1 8 8 C 1.53313 * 108.73147 * 162.86147 * 7 6 2 9 9 H 1.09001 * 109.43672 * 290.27218 * 8 7 6 10 10 C 1.50698 * 109.45593 * 170.32358 * 8 7 6 11 11 O 1.21277 * 119.99755 * 359.89373 * 10 8 7 12 12 N 1.34782 * 119.99975 * 179.88273 * 10 8 7 13 13 C 1.46503 * 119.99820 * 185.11834 * 12 10 8 14 14 C 1.52998 * 109.47308 * 298.25061 * 13 12 10 15 15 C 1.53005 * 109.46816 * 58.25059 * 13 12 10 16 16 N 1.46498 * 109.47401 * 59.99532 * 15 13 12 17 17 C 1.36933 * 120.00115 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99898 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99892 * 179.97438 * 17 16 15 20 20 N 1.31610 * 120.00112 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99648 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46902 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47079 * 60.00355 * 21 19 17 24 24 H 1.48500 * 109.47428 * 300.00262 * 21 19 17 25 25 C 1.52996 * 109.46820 * 178.24364 * 13 12 10 26 26 C 1.53004 * 117.49292 * 132.08958 * 25 13 12 27 27 C 1.53005 * 117.49756 * 63.43106 * 25 13 12 28 28 C 1.53148 * 109.58383 * 50.28817 * 8 7 6 29 29 C 1.50806 * 128.52421 * 180.09000 * 5 4 3 30 30 H 1.08997 * 109.47069 * 89.97796 * 1 2 3 31 31 H 1.09003 * 109.47159 * 209.97283 * 1 2 3 32 32 H 1.08992 * 109.47262 * 329.97557 * 1 2 3 33 33 H 1.08998 * 109.59389 * 43.08356 * 7 6 2 34 34 H 1.09006 * 109.59369 * 282.62981 * 7 6 2 35 35 H 0.96997 * 119.99632 * 5.12758 * 12 10 8 36 36 H 1.09000 * 109.46861 * 180.02562 * 14 13 12 37 37 H 1.09001 * 109.46920 * 299.99595 * 14 13 12 38 38 H 1.08995 * 109.47589 * 59.99645 * 14 13 12 39 39 H 1.09004 * 109.46938 * 299.99719 * 15 13 12 40 40 H 1.09000 * 109.47028 * 179.97438 * 15 13 12 41 41 H 0.96997 * 119.99819 * 0.02562 * 16 15 13 42 42 H 0.97004 * 120.00289 * 359.97438 * 20 19 17 43 43 H 1.08998 * 115.55541 * 277.75327 * 25 13 12 44 44 H 1.08999 * 117.50356 * 359.97438 * 26 25 13 45 45 H 1.09003 * 117.49696 * 145.02213 * 26 25 13 46 46 H 1.08994 * 117.49805 * 214.97672 * 27 25 13 47 47 H 1.08999 * 117.49903 * 359.97355 * 27 25 13 48 48 H 1.09001 * 109.49451 * 50.51224 * 28 8 7 49 49 H 1.08997 * 109.50107 * 170.58264 * 28 8 7 50 50 H 1.08992 * 109.72994 * 44.47392 * 29 5 4 51 51 H 1.08999 * 109.72639 * 283.79237 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0521 0.0000 4 7 3.5192 0.6812 0.0005 5 6 3.5815 -0.6156 0.0015 6 7 2.3075 -1.0833 0.0005 7 6 1.9366 -2.4980 -0.0025 8 6 3.1550 -3.3255 -0.4285 9 1 3.3621 -3.1492 -1.4840 10 6 2.8689 -4.7889 -0.2106 11 8 1.7989 -5.1367 0.2419 12 7 3.8022 -5.7112 -0.5190 13 6 3.4852 -7.1376 -0.4136 14 6 3.1427 -7.4781 1.0382 15 6 2.2879 -7.4615 -1.3095 16 7 2.6158 -7.1354 -2.6996 17 6 1.6911 -7.3431 -3.6880 18 1 0.7200 -7.7469 -3.4427 19 6 2.0017 -7.0336 -5.0051 20 7 3.1850 -6.5411 -5.3039 21 14 0.7404 -7.3176 -6.3535 22 1 1.3138 -6.9102 -7.6613 23 1 -0.4747 -6.5115 -6.0724 24 1 0.3797 -8.7575 -6.3987 25 6 4.6938 -7.9629 -0.8596 26 6 5.1336 -9.1166 0.0441 27 6 5.9761 -7.8408 -0.0338 28 6 4.3719 -2.9141 0.4055 29 6 4.8051 -1.4971 0.0043 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5142 33 1 1.1203 -2.6604 -0.7063 34 1 1.6242 -2.7962 0.9983 35 1 4.6837 -5.4304 -0.8105 36 1 2.9073 -8.5395 1.1166 37 1 3.9956 -7.2474 1.6764 38 1 2.2817 -6.8901 1.3559 39 1 1.4268 -6.8735 -0.9918 40 1 2.0523 -8.5229 -1.2314 41 1 3.4882 -6.7731 -2.9199 42 1 3.8400 -6.3940 -4.6038 43 1 4.7993 -8.0984 -1.9359 44 1 4.5622 -9.2874 0.9564 45 1 5.5289 -10.0108 -0.4379 46 1 6.9252 -7.8963 -0.5669 47 1 5.9588 -7.1723 0.8269 48 1 4.1099 -2.9296 1.4634 49 1 5.1903 -3.6104 0.2230 50 1 5.5303 -1.1178 0.7241 51 1 5.2484 -1.5144 -0.9913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495303478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:07 Heat of formation + Delta-G solvation = 55.432595 kcal Electronic energy + Delta-G solvation = -32167.138883 eV Core-core repulsion = 28102.988592 eV Total energy + Delta-G solvation = -4064.150291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.41491 -41.67316 -39.53204 -37.75313 -36.66093 -35.38511 -34.99342 -33.32544 -32.43707 -31.55253 -30.80105 -28.38053 -27.37556 -26.27335 -24.98244 -24.45920 -24.11726 -23.17131 -22.48003 -21.60444 -20.48801 -20.22080 -19.42016 -18.75186 -17.73130 -17.55388 -17.29974 -16.80801 -16.41394 -15.97043 -15.83915 -15.57436 -15.51724 -15.31203 -15.13244 -14.95334 -14.81543 -14.26993 -14.01491 -13.93335 -13.68937 -13.53969 -13.33389 -13.22073 -13.11613 -12.86055 -12.68105 -12.63888 -12.50383 -12.29649 -12.16181 -12.07651 -12.03299 -11.91730 -11.43693 -11.33505 -11.28857 -11.19558 -11.08830 -10.94284 -10.58359 -10.06687 -10.02480 -9.05898 -8.39430 -5.31394 0.74464 1.30407 1.55100 1.58715 1.63367 1.71981 1.80336 2.07462 2.67673 2.94916 3.01648 3.22333 3.34877 3.39360 3.49421 3.52756 3.58114 3.80354 3.82372 3.88281 3.96445 4.09290 4.13385 4.16662 4.22777 4.27748 4.37582 4.51071 4.56080 4.59520 4.61057 4.75728 4.77855 4.79274 4.81611 4.85535 4.91192 4.94959 4.96811 4.98915 5.00561 5.05690 5.18408 5.23676 5.29864 5.40611 5.55643 5.61184 5.81944 6.51228 6.56355 7.10389 7.22387 7.61846 8.00851 8.13774 9.12456 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008443 B = 0.003800 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.403456 B = 7366.901804 C = 9415.100147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.178 3.822 3 N -0.343 5.343 4 N -0.333 5.333 5 C 0.173 3.827 6 N -0.470 5.470 7 C 0.129 3.871 8 C -0.117 4.117 9 H 0.105 0.895 10 C 0.533 3.467 11 O -0.563 6.563 12 N -0.699 5.699 13 C 0.213 3.787 14 C -0.153 4.153 15 C 0.151 3.849 16 N -0.739 5.739 17 C -0.331 4.331 18 H 0.053 0.947 19 C -0.096 4.096 20 N -0.970 5.970 21 Si 1.120 2.880 22 H -0.291 1.291 23 H -0.284 1.284 24 H -0.280 1.280 25 C -0.178 4.178 26 C -0.167 4.167 27 C -0.150 4.150 28 C -0.105 4.105 29 C -0.029 4.029 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.410 0.590 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.022 0.978 40 H 0.013 0.987 41 H 0.364 0.636 42 H 0.245 0.755 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.114 0.886 48 H 0.085 0.915 49 H 0.119 0.881 50 H 0.125 0.875 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 3.138 16.903 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 N -0.183 5.183 4 N -0.172 5.172 5 C -0.096 4.096 6 N -0.160 5.160 7 C 0.007 3.993 8 C -0.139 4.139 9 H 0.123 0.877 10 C 0.319 3.681 11 O -0.442 6.442 12 N -0.350 5.350 13 C 0.127 3.873 14 C -0.211 4.211 15 C 0.023 3.977 16 N -0.385 5.385 17 C -0.463 4.463 18 H 0.071 0.929 19 C -0.288 4.288 20 N -0.618 5.618 21 Si 0.946 3.054 22 H -0.217 1.217 23 H -0.210 1.210 24 H -0.206 1.206 25 C -0.197 4.197 26 C -0.204 4.204 27 C -0.187 4.187 28 C -0.143 4.143 29 C -0.068 4.068 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.031 0.969 41 H 0.198 0.802 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.131 0.869 45 H 0.113 0.887 46 H 0.122 0.878 47 H 0.133 0.867 48 H 0.104 0.896 49 H 0.137 0.863 50 H 0.143 0.857 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.063 4.350 15.658 16.752 hybrid contribution 0.107 -1.185 0.773 1.418 sum 4.170 3.166 16.431 17.245 Atomic orbital electron populations 1.20417 0.81199 1.05868 1.05170 1.25357 0.98586 0.82374 1.02740 1.74365 0.96690 1.25283 1.21978 1.73918 1.12729 1.09764 1.20760 1.25433 0.88427 0.92335 1.03358 1.46123 1.06932 1.08792 1.54186 1.21741 0.97964 0.74504 1.05124 1.21563 0.97193 0.91406 1.03729 0.87744 1.20161 0.83709 0.87574 0.76658 1.90655 1.25468 1.82256 1.45860 1.45827 1.16044 1.05292 1.67795 1.19817 0.92635 0.79582 0.95266 1.22205 1.02988 1.02296 0.93658 1.21027 0.96351 0.96437 0.83862 1.42279 1.15273 1.78331 1.02570 1.20296 0.96404 1.38994 0.90631 0.92853 1.26927 1.02262 0.99964 0.99598 1.71006 1.06338 1.49795 1.34667 0.82711 0.72596 0.76593 0.73527 1.21654 1.21014 1.20612 1.22238 0.95824 1.03985 0.97636 1.23193 1.03316 0.92578 1.01351 1.23069 0.93649 1.00187 1.01812 1.21741 0.96194 0.96402 0.99961 1.20458 0.89909 0.90418 1.06018 0.88646 0.88686 0.87552 0.88678 0.87392 0.75369 0.91010 0.90002 0.92021 0.96011 0.96950 0.80228 0.94475 0.90074 0.86891 0.88676 0.87791 0.86743 0.89611 0.86319 0.85655 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.29 71.24 0.73 -0.43 16 2 C 0.18 4.65 8.07 138.14 1.11 5.76 16 3 N -0.34 -11.14 12.23 -50.46 -0.62 -11.75 16 4 N -0.33 -10.66 12.21 -50.27 -0.61 -11.27 16 5 C 0.17 4.34 7.75 138.14 1.07 5.41 16 6 N -0.47 -11.42 3.11 -504.67 -1.57 -13.00 16 7 C 0.13 2.82 5.46 86.53 0.47 3.30 16 8 C -0.12 -2.40 2.54 -11.39 -0.03 -2.43 16 9 H 0.10 2.39 8.12 -2.39 -0.02 2.37 16 10 C 0.53 13.96 6.56 87.66 0.57 14.53 16 11 O -0.56 -18.54 12.06 -3.02 -0.04 -18.58 16 12 N -0.70 -16.85 4.61 -422.92 -1.95 -18.79 16 13 C 0.21 5.93 0.54 3.60 0.00 5.93 16 14 C -0.15 -3.57 7.06 71.98 0.51 -3.07 16 15 C 0.15 6.08 4.94 86.38 0.43 6.51 16 16 N -0.74 -35.79 5.03 -343.45 -1.73 -37.52 16 17 C -0.33 -18.62 9.99 84.03 0.84 -17.79 16 18 H 0.05 3.03 7.83 -2.91 -0.02 3.01 16 19 C -0.10 -5.45 5.50 84.86 0.47 -4.98 16 20 N -0.97 -58.45 13.70 21.65 0.30 -58.16 16 21 Si 1.12 51.93 29.92 68.60 2.05 53.98 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 C -0.18 -4.51 4.86 -10.79 -0.05 -4.56 16 26 C -0.17 -3.27 9.63 30.62 0.29 -2.97 16 27 C -0.15 -2.49 9.72 30.62 0.30 -2.20 16 28 C -0.10 -1.37 5.23 30.81 0.16 -1.21 16 29 C -0.03 -0.44 6.34 30.05 0.19 -0.25 16 30 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.32 8.04 -2.39 -0.02 1.30 16 32 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.11 2.23 7.79 -2.38 -0.02 2.21 16 35 H 0.41 7.81 7.56 -92.71 -0.70 7.11 16 36 H 0.07 1.58 6.81 -2.39 -0.02 1.57 16 37 H 0.08 1.45 7.00 -2.39 -0.02 1.43 16 38 H 0.06 1.70 6.13 -2.39 -0.01 1.69 16 39 H 0.02 1.00 6.22 -2.39 -0.01 0.98 16 40 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.36 17.59 5.46 -92.71 -0.51 17.09 16 42 H 0.24 14.47 6.78 -92.71 -0.63 13.84 16 43 H 0.08 2.71 7.09 -2.39 -0.02 2.69 16 44 H 0.11 1.94 5.87 -2.39 -0.01 1.92 16 45 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 46 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.11 1.45 7.39 -2.39 -0.02 1.43 16 48 H 0.09 1.07 8.12 -2.39 -0.02 1.05 16 49 H 0.12 0.94 7.22 -2.39 -0.02 0.93 16 50 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -79.82 397.21 2.81 -77.02 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: -0.10 Total: 36.51 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 7.07 Total: 1.55 kcal Atomic # 7 Polarization: -144.30 SS G_CDS: -6.18 Total: -150.48 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.04 Total: -18.58 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.05 Total: 53.98 kcal Total: -79.82 2.81 -77.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495303478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.449 kcal (2) G-P(sol) polarization free energy of solvation -79.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds