Wall clock time and date at job start Wed Apr 1 2020 04:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.52824 * 2 1 4 4 N 1.46505 * 109.46821 * 60.07612 * 3 2 1 5 5 C 1.34775 * 119.99669 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00312 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99986 * 180.02562 * 5 4 3 8 8 H 1.09000 * 109.69071 * 60.54999 * 7 5 4 9 9 C 1.53434 * 109.69588 * 181.13558 * 7 5 4 10 10 C 1.53145 * 109.53981 * 169.43870 * 9 7 5 11 11 C 1.53419 * 109.56160 * 289.91560 * 10 9 7 12 12 C 1.50594 * 108.33763 * 49.83510 * 11 10 9 13 13 N 1.32911 * 129.16213 * 163.38005 * 12 11 10 14 14 N 1.29021 * 108.63283 * 180.21510 * 13 12 11 15 15 N 1.29109 * 110.25966 * 359.97191 * 14 13 12 16 16 H 0.96997 * 126.00652 * 179.97438 * 15 14 13 17 17 C 1.34391 * 107.98631 * 359.94302 * 15 14 13 18 18 C 1.53041 * 109.50028 * 239.91807 * 2 1 3 19 19 C 1.53038 * 109.53719 * 301.41770 * 18 2 1 20 20 C 1.53631 * 109.24213 * 298.50741 * 19 18 2 21 21 N 1.46923 * 108.54036 * 54.85570 * 20 19 18 22 22 C 1.36940 * 120.62812 * 126.37121 * 21 20 19 23 23 H 1.07996 * 119.99628 * 332.04078 * 22 21 20 24 24 C 1.38808 * 119.99786 * 152.04325 * 22 21 20 25 25 N 1.31621 * 119.99993 * 342.64203 * 24 22 21 26 26 Si 1.86803 * 120.00030 * 162.64367 * 24 22 21 27 27 H 1.48499 * 109.47023 * 269.99749 * 26 24 22 28 28 H 1.48504 * 109.46872 * 29.99673 * 26 24 22 29 29 H 1.48504 * 109.47161 * 149.99639 * 26 24 22 30 30 C 1.46928 * 118.74171 * 306.09682 * 21 20 19 31 31 H 1.09001 * 109.47119 * 299.92129 * 1 2 3 32 32 H 1.09004 * 109.46982 * 59.91802 * 1 2 3 33 33 H 1.09001 * 109.47425 * 179.91738 * 1 2 3 34 34 H 1.08998 * 109.47409 * 180.08259 * 3 2 1 35 35 H 1.09007 * 109.46867 * 300.08230 * 3 2 1 36 36 H 0.96996 * 120.00365 * 0.02562 * 4 3 2 37 37 H 1.08990 * 109.45646 * 289.44984 * 9 7 5 38 38 H 1.08999 * 109.45528 * 49.40271 * 9 7 5 39 39 H 1.08998 * 109.44649 * 169.89501 * 10 9 7 40 40 H 1.08995 * 109.47380 * 49.94913 * 10 9 7 41 41 H 1.08999 * 109.69719 * 290.11805 * 11 10 9 42 42 H 1.09008 * 109.68741 * 169.54251 * 11 10 9 43 43 H 1.09005 * 109.45630 * 61.43277 * 18 2 1 44 44 H 1.08998 * 109.46443 * 181.39116 * 18 2 1 45 45 H 1.08994 * 109.50474 * 58.58488 * 19 18 2 46 46 H 1.09007 * 109.49914 * 178.64882 * 19 18 2 47 47 H 1.09000 * 109.73449 * 295.11703 * 20 19 18 48 48 H 1.08998 * 109.66186 * 174.55352 * 20 19 18 49 49 H 0.97002 * 119.99607 * 180.02562 * 25 24 22 50 50 H 1.08999 * 109.58917 * 173.65023 * 30 21 20 51 51 H 1.09008 * 109.58452 * 294.07660 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 7 1.5552 2.1325 1.1971 5 6 1.8828 3.4222 1.4108 6 8 2.5796 4.0114 0.6119 7 6 1.3831 4.1324 2.6425 8 1 1.7532 3.6260 3.5340 9 6 1.8701 5.5874 2.6338 10 6 1.1534 6.3741 3.7351 11 6 -0.3224 6.5575 3.3580 12 6 -0.8814 5.2154 2.9652 13 7 -2.1499 4.8339 2.8559 14 7 -2.1782 3.5950 2.4971 15 7 -0.9772 3.1405 2.3638 16 1 -0.7345 2.2384 2.1025 17 6 -0.1222 4.1372 2.6499 18 6 2.0408 -0.7231 -1.2483 19 6 1.5030 -2.1557 -1.2660 20 6 2.0188 -2.9055 -0.0283 21 7 1.6515 -2.1382 1.1696 22 6 0.9639 -2.7315 2.1945 23 1 0.3080 -3.5655 1.9930 24 6 1.1099 -2.2608 3.4921 25 7 2.1347 -1.4957 3.8033 26 14 -0.1480 -2.7133 4.7969 27 1 -1.2303 -1.6967 4.8147 28 1 -0.7256 -4.0458 4.4866 29 1 0.5118 -2.7573 6.1265 30 6 2.0412 -0.7238 1.2496 31 1 -0.3633 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3634 -1.0277 -0.0015 34 1 3.1314 1.4409 -0.0015 35 1 1.6773 1.9566 -0.8893 36 1 0.9982 1.6613 1.8363 37 1 2.9452 5.6115 2.8115 38 1 1.6522 6.0374 1.6653 39 1 1.6234 7.3510 3.8478 40 1 1.2224 5.8276 4.6757 41 1 -0.4040 7.2490 2.5194 42 1 -0.8739 6.9492 4.2127 43 1 1.6987 -0.1958 -2.1389 44 1 3.1305 -0.7444 -1.2353 45 1 0.4133 -2.1355 -1.2541 46 1 1.8476 -2.6627 -2.1674 47 1 3.1032 -3.0023 -0.0820 48 1 1.5635 -3.8948 0.0175 49 1 2.2369 -1.1672 4.7102 50 1 1.6007 -0.2731 2.1389 51 1 3.1275 -0.6463 1.2980 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500519871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:16 Heat of formation + Delta-G solvation = 61.153318 kcal Electronic energy + Delta-G solvation = -32820.884206 eV Core-core repulsion = 28756.981984 eV Total energy + Delta-G solvation = -4063.902222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.63172 -40.10865 -38.64514 -36.90719 -35.04121 -34.07505 -33.29695 -31.64014 -30.62468 -30.25305 -29.98370 -26.87505 -26.06817 -25.44674 -24.48271 -23.22300 -22.74368 -22.29784 -20.93372 -20.61337 -19.73005 -18.52063 -17.96184 -17.24563 -16.80328 -16.33875 -15.85977 -15.64840 -15.14996 -14.72692 -14.29198 -14.17169 -14.08042 -14.01548 -13.84261 -13.76277 -13.41563 -13.30126 -12.88831 -12.50493 -12.37105 -12.28308 -11.82485 -11.70425 -11.54990 -11.49917 -11.47929 -11.24941 -11.10185 -11.03089 -10.82833 -10.80353 -10.51686 -10.48637 -10.36707 -10.22489 -10.04288 -9.94809 -9.69893 -9.54087 -9.03077 -8.99922 -8.63531 -6.81816 -5.95303 -3.37285 1.38035 2.34231 2.43161 2.63562 3.13526 3.24497 3.34267 3.34884 4.06100 4.20929 4.34770 4.44696 4.56395 4.67868 4.92175 5.03355 5.06695 5.10030 5.12882 5.20952 5.24140 5.34490 5.39654 5.44517 5.62933 5.65165 5.72002 5.79895 5.81335 5.84140 5.85629 5.89077 5.97031 6.06675 6.07606 6.10305 6.22617 6.26462 6.37236 6.40566 6.52283 6.64623 6.67710 6.73170 6.79687 6.89934 7.10228 7.36483 7.41739 7.64877 8.09384 8.27492 8.32909 9.05067 9.67957 10.25241 11.12432 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010653 B = 0.004043 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.796905 B = 6923.394957 C = 8149.667167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.134 3.866 4 N -0.722 5.722 5 C 0.516 3.484 6 O -0.529 6.529 7 C -0.035 4.035 8 H 0.123 0.877 9 C -0.095 4.095 10 C -0.120 4.120 11 C -0.034 4.034 12 C -0.008 4.008 13 N -0.259 5.259 14 N -0.078 5.078 15 N -0.377 5.377 16 H 0.446 0.554 17 C -0.010 4.010 18 C -0.094 4.094 19 C -0.135 4.135 20 C 0.142 3.858 21 N -0.588 5.588 22 C -0.249 4.249 23 H 0.067 0.933 24 C 0.003 3.997 25 N -0.903 5.903 26 Si 0.896 3.104 27 H -0.288 1.288 28 H -0.278 1.278 29 H -0.291 1.291 30 C 0.185 3.815 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.395 0.605 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.018 0.982 48 H 0.053 0.947 49 H 0.253 0.747 50 H 0.085 0.915 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 12.197 -3.709 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.108 4.108 3 C 0.010 3.990 4 N -0.375 5.375 5 C 0.301 3.699 6 O -0.406 6.406 7 C -0.059 4.059 8 H 0.140 0.860 9 C -0.133 4.133 10 C -0.158 4.158 11 C -0.073 4.073 12 C -0.148 4.148 13 N -0.125 5.125 14 N -0.057 5.057 15 N -0.098 5.098 16 H 0.294 0.706 17 C -0.146 4.146 18 C -0.132 4.132 19 C -0.175 4.175 20 C 0.016 3.984 21 N -0.310 5.310 22 C -0.378 4.378 23 H 0.085 0.915 24 C -0.196 4.196 25 N -0.548 5.548 26 Si 0.726 3.274 27 H -0.215 1.215 28 H -0.203 1.203 29 H -0.217 1.217 30 C 0.059 3.941 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.231 0.769 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.036 0.964 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.103 0.897 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -1.402 12.411 -4.185 13.172 hybrid contribution 0.377 -1.140 0.989 1.555 sum -1.025 11.271 -3.197 11.760 Atomic orbital electron populations 1.21734 0.94679 1.03007 0.98739 1.21589 0.96257 0.92687 1.00226 1.21480 0.99349 0.92089 0.86043 1.46245 1.53454 1.11707 1.26055 1.20309 0.80639 0.81944 0.87031 1.90699 1.37590 1.66024 1.46243 1.20107 0.87040 1.00099 0.98643 0.85979 1.21459 1.00843 0.90427 1.00618 1.21695 0.94105 1.01226 0.98812 1.20011 0.95032 0.90148 1.02119 1.21702 0.89241 0.97592 1.06245 1.74841 1.19464 1.03176 1.15048 1.78616 1.02005 1.06170 1.18908 1.44961 1.05406 1.13731 1.45715 0.70629 1.21482 0.94472 0.89988 1.08669 1.21333 1.00068 0.96056 0.95781 1.22123 1.00973 0.95594 0.98766 1.21037 0.96422 0.94272 0.86652 1.43999 1.65161 1.05423 1.16452 1.19217 1.17825 1.15014 0.85773 0.91550 1.25003 0.96999 1.00717 0.96847 1.70043 1.27249 1.38697 1.18795 0.86386 0.81119 0.78564 0.81370 1.21460 1.20282 1.21692 1.20791 0.96371 0.83976 0.92983 0.95025 0.94123 0.90384 0.91263 0.91932 0.76875 0.89633 0.90012 0.89963 0.91057 0.89691 0.89536 0.93291 0.92395 0.91914 0.93082 0.96402 0.92803 0.93654 0.89672 0.96214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 7.81 37.16 0.29 -1.63 16 2 C -0.11 -1.69 0.53 -154.39 -0.08 -1.77 16 3 C 0.13 1.99 4.57 -4.04 -0.02 1.98 16 4 N -0.72 -10.26 4.56 -60.29 -0.28 -10.54 16 5 C 0.52 7.31 7.15 -10.99 -0.08 7.23 16 6 O -0.53 -8.85 15.84 5.56 0.09 -8.77 16 7 C -0.04 -0.41 2.91 -92.78 -0.27 -0.68 16 8 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 9 C -0.10 -0.91 4.66 -26.43 -0.12 -1.03 16 10 C -0.12 -0.91 5.90 -26.44 -0.16 -1.07 16 11 C -0.03 -0.31 6.30 -27.72 -0.17 -0.48 16 12 C -0.01 -0.10 7.11 -83.12 -0.59 -0.69 16 13 N -0.26 -4.02 12.40 33.16 0.41 -3.61 16 14 N -0.08 -1.23 13.40 60.35 0.81 -0.42 16 15 N -0.38 -5.21 6.76 33.39 0.23 -4.98 16 16 H 0.45 5.72 5.90 -190.08 -1.12 4.60 16 17 C -0.01 -0.13 6.38 -82.50 -0.53 -0.66 16 18 C -0.09 -1.41 4.71 -26.69 -0.13 -1.54 16 19 C -0.14 -2.11 5.75 -26.38 -0.15 -2.26 16 20 C 0.14 2.73 6.54 -3.48 -0.02 2.71 16 21 N -0.59 -13.13 2.43 -172.05 -0.42 -13.55 16 22 C -0.25 -6.22 9.58 -15.06 -0.14 -6.36 16 23 H 0.07 1.66 7.89 -52.49 -0.41 1.25 16 24 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 25 N -0.90 -23.82 11.19 55.49 0.62 -23.20 16 26 Si 0.90 20.35 29.59 -169.99 -5.03 15.32 16 27 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 30 C 0.19 3.80 3.72 -3.71 -0.01 3.78 16 31 H 0.03 0.47 5.96 -51.93 -0.31 0.16 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.35 5.97 -51.93 -0.31 1.04 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.40 5.59 4.31 -40.82 -0.18 5.42 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.99 6.33 -51.93 -0.33 0.67 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 49 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 50 H 0.09 1.89 4.94 -51.93 -0.26 1.64 16 51 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -29.85 385.26 -8.82 -38.67 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -8.78 Total: 7.75 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.27 Total: -2.49 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 1.37 Total: -56.29 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.85 -8.82 -38.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500519871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.822 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds