Wall clock time and date at job start Wed Apr 1 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30838 * 126.46708 * 2 1 4 4 N 1.28904 * 109.74268 * 180.02562 * 3 2 1 5 5 C 1.29845 * 109.47718 * 0.02562 * 4 3 2 6 6 N 1.34696 * 126.46600 * 179.97438 * 2 1 3 7 7 C 1.46259 * 128.84430 * 359.88286 * 6 2 1 8 8 C 1.53323 * 108.72964 * 197.09033 * 7 6 2 9 9 H 1.09001 * 109.45265 * 69.70505 * 8 7 6 10 10 C 1.50691 * 109.45653 * 189.66865 * 8 7 6 11 11 O 1.21282 * 120.00115 * 11.18342 * 10 8 7 12 12 N 1.34777 * 120.00376 * 191.18693 * 10 8 7 13 13 C 1.46928 * 120.62768 * 3.67078 * 12 10 8 14 14 C 1.53168 * 108.76855 * 233.59003 * 13 12 10 15 15 C 1.53037 * 109.32842 * 305.35723 * 14 13 12 16 16 C 1.53041 * 109.53017 * 61.37009 * 15 14 13 17 17 C 1.46920 * 120.63516 * 183.65715 * 12 10 8 18 18 H 1.09011 * 109.70220 * 246.27102 * 17 12 10 19 19 C 1.53004 * 109.58755 * 6.61758 * 17 12 10 20 20 N 1.46499 * 109.47309 * 287.06204 * 19 17 12 21 21 C 1.36938 * 120.00477 * 185.53167 * 20 19 17 22 22 H 1.08002 * 119.99100 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00369 * 180.02562 * 21 20 19 24 24 N 1.31614 * 119.99864 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99952 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46850 * 359.97438 * 25 23 21 27 27 H 1.48491 * 109.46990 * 119.99706 * 25 23 21 28 28 H 1.48498 * 109.47008 * 240.00104 * 25 23 21 29 29 C 1.53145 * 109.57474 * 309.70410 * 8 7 6 30 30 C 1.50800 * 128.52183 * 179.84024 * 5 4 3 31 31 H 1.09001 * 109.47443 * 270.04469 * 1 2 3 32 32 H 1.09008 * 109.47218 * 30.04222 * 1 2 3 33 33 H 1.08995 * 109.47285 * 150.03913 * 1 2 3 34 34 H 1.08998 * 109.59632 * 77.31225 * 7 6 2 35 35 H 1.09008 * 109.59402 * 316.85839 * 7 6 2 36 36 H 1.08997 * 109.58890 * 353.37552 * 13 12 10 37 37 H 1.08998 * 109.58763 * 113.65621 * 13 12 10 38 38 H 1.08999 * 109.47803 * 185.40800 * 14 13 12 39 39 H 1.09003 * 109.49912 * 65.31960 * 14 13 12 40 40 H 1.08999 * 109.45686 * 301.35765 * 15 14 13 41 41 H 1.09000 * 109.45807 * 181.38575 * 15 14 13 42 42 H 1.09006 * 109.49347 * 58.58894 * 16 15 14 43 43 H 1.08993 * 109.49789 * 178.65829 * 16 15 14 44 44 H 1.09001 * 109.46933 * 47.05694 * 19 17 12 45 45 H 1.08998 * 109.47167 * 167.05984 * 19 17 12 46 46 H 0.97006 * 119.99945 * 5.53068 * 20 19 17 47 47 H 0.96998 * 119.99803 * 179.97438 * 24 23 21 48 48 H 1.08992 * 109.49758 * 189.39167 * 29 8 7 49 49 H 1.09000 * 109.49287 * 309.48742 * 29 8 7 50 50 H 1.08999 * 109.73265 * 315.57857 * 30 5 4 51 51 H 1.09001 * 109.72788 * 76.21113 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6813 -0.0005 5 6 3.5815 -0.6157 -0.0015 6 7 2.3075 -1.0832 0.0005 7 6 1.9366 -2.4980 0.0034 8 6 3.1550 -3.3255 0.4295 9 1 3.3625 -3.1491 1.4850 10 6 2.8689 -4.7889 0.2119 11 8 1.8914 -5.1281 -0.4209 12 7 3.6992 -5.7209 0.7204 13 6 4.8422 -5.3290 1.5563 14 6 6.1155 -5.9479 0.9716 15 6 5.9267 -7.4604 0.8346 16 6 4.7673 -7.7466 -0.1225 17 6 3.4785 -7.1479 0.4496 18 1 3.2164 -7.6613 1.3749 19 6 2.3442 -7.3081 -0.5646 20 7 1.0645 -7.0084 0.0825 21 6 -0.1081 -7.1947 -0.5998 22 1 -0.0894 -7.5622 -1.6152 23 6 -1.3206 -6.9103 0.0132 24 7 -1.3433 -6.4619 1.2504 25 14 -2.9201 -7.1638 -0.9179 26 1 -2.6238 -7.6713 -2.2816 27 1 -3.7630 -8.1494 -0.1946 28 1 -3.6448 -5.8715 -1.0178 29 6 4.3718 -2.9141 -0.4045 30 6 4.8050 -1.4971 -0.0056 31 1 -0.3634 0.0008 1.0277 32 1 -0.3634 0.8897 -0.5145 33 1 -0.3633 -0.8903 -0.5132 34 1 1.6241 -2.7961 -0.9973 35 1 1.1202 -2.6604 0.7073 36 1 4.9340 -4.2429 1.5639 37 1 4.6917 -5.6900 2.5737 38 1 6.9561 -5.7448 1.6352 39 1 6.3129 -5.5155 -0.0093 40 1 5.7048 -7.8886 1.8120 41 1 6.8404 -7.9062 0.4417 42 1 4.9774 -7.2972 -1.0931 43 1 4.6486 -8.8238 -0.2383 44 1 2.5005 -6.6209 -1.3961 45 1 2.3318 -8.3324 -0.9372 46 1 1.0477 -6.6780 0.9944 47 1 -2.1905 -6.2628 1.6787 48 1 5.1903 -3.6101 -0.2216 49 1 4.1097 -2.9297 -1.4624 50 1 5.5298 -1.1173 -0.7257 51 1 5.2495 -1.5143 0.9895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501898616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:19 Heat of formation + Delta-G solvation = 86.662478 kcal Electronic energy + Delta-G solvation = -32943.698530 eV Core-core repulsion = 28880.902468 eV Total energy + Delta-G solvation = -4062.796062 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.29115 -40.55383 -37.71268 -36.63187 -34.54053 -34.12603 -32.79437 -32.15821 -31.27698 -30.33662 -29.89140 -27.33713 -26.36754 -25.05519 -24.39708 -23.23728 -22.77711 -21.68455 -21.19891 -20.61958 -19.81238 -18.53850 -17.53454 -16.76566 -16.55966 -16.04526 -15.91189 -15.24766 -15.02148 -14.62689 -14.54095 -14.33476 -14.22107 -13.91671 -13.77018 -13.60842 -13.49412 -13.12957 -12.98860 -12.78685 -12.64309 -12.47026 -12.27794 -12.14741 -11.97595 -11.78633 -11.48979 -11.32738 -11.17261 -11.14621 -11.00721 -10.81679 -10.78774 -10.68762 -10.38759 -10.29592 -10.02219 -9.92396 -9.59237 -8.94364 -8.78383 -8.58542 -8.20414 -6.60661 -5.63695 -2.83680 1.83990 2.43951 2.86947 3.03163 3.18783 3.47880 3.53862 3.55338 4.02938 4.24898 4.29668 4.50335 4.51358 4.63506 4.66880 4.76093 4.80001 4.89100 4.98084 5.01654 5.08894 5.10453 5.27804 5.33758 5.36563 5.41139 5.42628 5.51531 5.52163 5.57768 5.68898 5.71092 5.71670 5.73889 5.80638 5.84337 5.87062 5.91924 5.98673 6.03664 6.06945 6.22439 6.25440 6.44498 6.54881 6.80223 6.88654 7.13366 7.73751 7.79966 8.54491 8.68593 8.76968 9.66581 10.26469 10.61093 11.60313 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007647 B = 0.005019 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3660.823048 B = 5577.548067 C = 8825.520660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.183 3.817 3 N -0.306 5.306 4 N -0.295 5.295 5 C 0.168 3.832 6 N -0.464 5.464 7 C 0.122 3.878 8 C -0.118 4.118 9 H 0.097 0.903 10 C 0.484 3.516 11 O -0.437 6.437 12 N -0.610 5.610 13 C 0.105 3.895 14 C -0.134 4.134 15 C -0.118 4.118 16 C -0.127 4.127 17 C 0.142 3.858 18 H 0.070 0.930 19 C 0.162 3.838 20 N -0.696 5.696 21 C -0.207 4.207 22 H 0.064 0.936 23 C -0.021 4.021 24 N -0.939 5.939 25 Si 0.899 3.101 26 H -0.283 1.283 27 H -0.295 1.295 28 H -0.295 1.295 29 C -0.119 4.119 30 C -0.029 4.029 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.035 0.965 45 H 0.017 0.983 46 H 0.379 0.621 47 H 0.249 0.751 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.101 0.899 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.935 4.522 0.549 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.084 4.084 3 N -0.147 5.147 4 N -0.135 5.135 5 C -0.100 4.100 6 N -0.154 5.154 7 C -0.001 4.001 8 C -0.140 4.140 9 H 0.115 0.885 10 C 0.267 3.733 11 O -0.304 6.304 12 N -0.347 5.347 13 C -0.019 4.019 14 C -0.173 4.173 15 C -0.156 4.156 16 C -0.166 4.166 17 C 0.039 3.961 18 H 0.088 0.912 19 C 0.034 3.966 20 N -0.339 5.339 21 C -0.339 4.339 22 H 0.082 0.918 23 C -0.215 4.215 24 N -0.590 5.590 25 Si 0.731 3.269 26 H -0.209 1.209 27 H -0.223 1.223 28 H -0.223 1.223 29 C -0.157 4.157 30 C -0.068 4.068 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.053 0.947 45 H 0.034 0.966 46 H 0.213 0.787 47 H 0.059 0.941 48 H 0.110 0.890 49 H 0.096 0.904 50 H 0.120 0.880 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.627 5.724 0.020 17.584 hybrid contribution -1.331 -1.290 0.041 1.854 sum 15.296 4.433 0.061 15.926 Atomic orbital electron populations 1.20253 0.83648 1.04754 1.04266 1.24675 0.97166 0.82703 1.03881 1.74444 0.96079 1.23767 1.20422 1.73986 1.12500 1.08110 1.18946 1.24620 0.87200 0.92543 1.05618 1.46058 1.06826 1.08872 1.53656 1.21864 0.97907 0.74459 1.05846 1.21587 0.95543 0.94754 1.02145 0.88474 1.19922 0.83782 0.86031 0.83527 1.91263 1.24039 1.79231 1.35889 1.47805 1.28457 1.06275 1.52193 1.21725 0.85743 0.99988 0.94411 1.21927 0.97226 0.96507 1.01595 1.21497 0.98386 0.95624 1.00064 1.21911 0.94422 1.01137 0.99115 1.21507 0.95231 0.79769 0.99556 0.91203 1.20844 0.85176 0.96485 0.94062 1.42203 0.99564 1.77395 1.14718 1.19190 0.84478 1.33887 0.96314 0.91758 1.24572 0.97117 1.03278 0.96526 1.69658 1.24322 1.52811 1.12225 0.86209 0.84722 0.77105 0.78819 1.20860 1.22277 1.22274 1.21781 0.97259 0.95895 1.00759 1.20188 0.91230 0.91276 1.04155 0.89489 0.88812 0.89891 0.87547 0.87589 0.90023 0.91688 0.91068 0.91531 0.91819 0.91952 0.91598 0.90822 0.94742 0.96573 0.78694 0.94113 0.88971 0.90361 0.88045 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.28 36.00 0.37 -0.42 16 2 C 0.18 2.69 8.07 -155.45 -1.25 1.43 16 3 N -0.31 -5.18 12.23 32.70 0.40 -4.78 16 4 N -0.30 -4.88 12.21 32.76 0.40 -4.48 16 5 C 0.17 2.29 7.75 -155.31 -1.20 1.09 16 6 N -0.46 -6.44 3.11 -110.86 -0.35 -6.79 16 7 C 0.12 1.66 5.58 -4.01 -0.02 1.64 16 8 C -0.12 -1.40 1.67 -91.53 -0.15 -1.55 16 9 H 0.10 1.05 7.14 -51.93 -0.37 0.68 16 10 C 0.48 7.39 6.55 -10.99 -0.07 7.32 16 11 O -0.44 -8.93 9.51 5.56 0.05 -8.88 16 12 N -0.61 -8.00 2.97 -165.24 -0.49 -8.49 16 13 C 0.10 0.95 5.47 -3.72 -0.02 0.93 16 14 C -0.13 -1.00 5.97 -26.62 -0.16 -1.16 16 15 C -0.12 -1.00 5.88 -26.69 -0.16 -1.16 16 16 C -0.13 -1.40 5.34 -26.61 -0.14 -1.55 16 17 C 0.14 2.10 2.91 -67.60 -0.20 1.90 16 18 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 19 C 0.16 3.18 4.89 -4.04 -0.02 3.16 16 20 N -0.70 -17.24 3.21 -59.91 -0.19 -17.43 16 21 C -0.21 -5.79 9.75 -15.06 -0.15 -5.94 16 22 H 0.06 1.80 7.83 -52.49 -0.41 1.38 16 23 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 24 N -0.94 -28.31 13.06 55.49 0.72 -27.59 16 25 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16 28 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 29 C -0.12 -1.09 4.76 -26.43 -0.13 -1.22 16 30 C -0.03 -0.26 6.33 -27.61 -0.17 -0.44 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16 34 H 0.11 1.60 7.63 -51.93 -0.40 1.20 16 35 H 0.11 1.57 8.14 -51.92 -0.42 1.14 16 36 H 0.08 0.61 4.71 -51.93 -0.24 0.37 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.04 0.73 6.33 -51.93 -0.33 0.40 16 45 H 0.02 0.33 8.09 -51.93 -0.42 -0.09 16 46 H 0.38 10.06 7.22 -40.82 -0.29 9.76 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.09 0.68 5.62 -51.93 -0.29 0.39 16 49 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 50 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 388.19 15.07 5.85 5.85 Total: -1.00 -35.43 388.19 -10.40 -45.82 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.20 Total: 5.65 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -3.57 Total: 3.37 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: 0.50 Total: -69.56 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.05 Total: -8.88 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.43 -10.40 -45.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501898616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.485 kcal (2) G-P(sol) polarization free energy of solvation -35.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds