Wall clock time and date at job start Wed Apr 1 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30838 * 126.46708 * 2 1 4 4 N 1.28904 * 109.74268 * 180.02562 * 3 2 1 5 5 C 1.29845 * 109.47718 * 0.02562 * 4 3 2 6 6 N 1.34696 * 126.46600 * 179.97438 * 2 1 3 7 7 C 1.46259 * 128.84430 * 359.88286 * 6 2 1 8 8 C 1.53323 * 108.72964 * 197.09033 * 7 6 2 9 9 H 1.09001 * 109.45265 * 69.70505 * 8 7 6 10 10 C 1.50691 * 109.45653 * 189.66865 * 8 7 6 11 11 O 1.21282 * 120.00115 * 11.18342 * 10 8 7 12 12 N 1.34777 * 120.00376 * 191.18693 * 10 8 7 13 13 C 1.46928 * 120.62768 * 3.67078 * 12 10 8 14 14 C 1.53168 * 108.76855 * 233.59003 * 13 12 10 15 15 C 1.53037 * 109.32842 * 305.35723 * 14 13 12 16 16 C 1.53041 * 109.53017 * 61.37009 * 15 14 13 17 17 C 1.46920 * 120.63516 * 183.65715 * 12 10 8 18 18 H 1.09011 * 109.70220 * 246.27102 * 17 12 10 19 19 C 1.53004 * 109.58755 * 6.61758 * 17 12 10 20 20 N 1.46499 * 109.47309 * 287.06204 * 19 17 12 21 21 C 1.36938 * 120.00477 * 185.53167 * 20 19 17 22 22 H 1.08002 * 119.99100 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00369 * 180.02562 * 21 20 19 24 24 N 1.31614 * 119.99864 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99952 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46850 * 359.97438 * 25 23 21 27 27 H 1.48491 * 109.46990 * 119.99706 * 25 23 21 28 28 H 1.48498 * 109.47008 * 240.00104 * 25 23 21 29 29 C 1.53145 * 109.57474 * 309.70410 * 8 7 6 30 30 C 1.50800 * 128.52183 * 179.84024 * 5 4 3 31 31 H 1.09001 * 109.47443 * 270.04469 * 1 2 3 32 32 H 1.09008 * 109.47218 * 30.04222 * 1 2 3 33 33 H 1.08995 * 109.47285 * 150.03913 * 1 2 3 34 34 H 1.08998 * 109.59632 * 77.31225 * 7 6 2 35 35 H 1.09008 * 109.59402 * 316.85839 * 7 6 2 36 36 H 1.08997 * 109.58890 * 353.37552 * 13 12 10 37 37 H 1.08998 * 109.58763 * 113.65621 * 13 12 10 38 38 H 1.08999 * 109.47803 * 185.40800 * 14 13 12 39 39 H 1.09003 * 109.49912 * 65.31960 * 14 13 12 40 40 H 1.08999 * 109.45686 * 301.35765 * 15 14 13 41 41 H 1.09000 * 109.45807 * 181.38575 * 15 14 13 42 42 H 1.09006 * 109.49347 * 58.58894 * 16 15 14 43 43 H 1.08993 * 109.49789 * 178.65829 * 16 15 14 44 44 H 1.09001 * 109.46933 * 47.05694 * 19 17 12 45 45 H 1.08998 * 109.47167 * 167.05984 * 19 17 12 46 46 H 0.97006 * 119.99945 * 5.53068 * 20 19 17 47 47 H 0.96998 * 119.99803 * 179.97438 * 24 23 21 48 48 H 1.08992 * 109.49758 * 189.39167 * 29 8 7 49 49 H 1.09000 * 109.49287 * 309.48742 * 29 8 7 50 50 H 1.08999 * 109.73265 * 315.57857 * 30 5 4 51 51 H 1.09001 * 109.72788 * 76.21113 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6813 -0.0005 5 6 3.5815 -0.6157 -0.0015 6 7 2.3075 -1.0832 0.0005 7 6 1.9366 -2.4980 0.0034 8 6 3.1550 -3.3255 0.4295 9 1 3.3625 -3.1491 1.4850 10 6 2.8689 -4.7889 0.2119 11 8 1.8914 -5.1281 -0.4209 12 7 3.6992 -5.7209 0.7204 13 6 4.8422 -5.3290 1.5563 14 6 6.1155 -5.9479 0.9716 15 6 5.9267 -7.4604 0.8346 16 6 4.7673 -7.7466 -0.1225 17 6 3.4785 -7.1479 0.4496 18 1 3.2164 -7.6613 1.3749 19 6 2.3442 -7.3081 -0.5646 20 7 1.0645 -7.0084 0.0825 21 6 -0.1081 -7.1947 -0.5998 22 1 -0.0894 -7.5622 -1.6152 23 6 -1.3206 -6.9103 0.0132 24 7 -1.3433 -6.4619 1.2504 25 14 -2.9201 -7.1638 -0.9179 26 1 -2.6238 -7.6713 -2.2816 27 1 -3.7630 -8.1494 -0.1946 28 1 -3.6448 -5.8715 -1.0178 29 6 4.3718 -2.9141 -0.4045 30 6 4.8050 -1.4971 -0.0056 31 1 -0.3634 0.0008 1.0277 32 1 -0.3634 0.8897 -0.5145 33 1 -0.3633 -0.8903 -0.5132 34 1 1.6241 -2.7961 -0.9973 35 1 1.1202 -2.6604 0.7073 36 1 4.9340 -4.2429 1.5639 37 1 4.6917 -5.6900 2.5737 38 1 6.9561 -5.7448 1.6352 39 1 6.3129 -5.5155 -0.0093 40 1 5.7048 -7.8886 1.8120 41 1 6.8404 -7.9062 0.4417 42 1 4.9774 -7.2972 -1.0931 43 1 4.6486 -8.8238 -0.2383 44 1 2.5005 -6.6209 -1.3961 45 1 2.3318 -8.3324 -0.9372 46 1 1.0477 -6.6780 0.9944 47 1 -2.1905 -6.2628 1.6787 48 1 5.1903 -3.6101 -0.2216 49 1 4.1097 -2.9297 -1.4624 50 1 5.5298 -1.1173 -0.7257 51 1 5.2495 -1.5143 0.9895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501898616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:18 Heat of formation + Delta-G solvation = 64.992693 kcal Electronic energy + Delta-G solvation = -32944.638203 eV Core-core repulsion = 28880.902468 eV Total energy + Delta-G solvation = -4063.735734 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.40023 -41.69297 -38.73039 -37.75227 -36.22243 -35.19451 -33.90930 -33.58839 -32.36510 -31.45656 -31.31554 -28.39007 -27.70549 -26.34035 -25.51016 -24.31092 -24.16495 -22.89124 -22.35073 -21.54882 -20.84683 -19.65825 -19.13560 -18.20158 -17.64683 -17.17655 -16.99681 -16.68731 -16.14546 -16.01046 -15.47237 -15.36992 -15.21385 -15.14295 -14.99573 -14.79462 -14.70656 -14.39652 -14.01992 -13.96592 -13.73730 -13.54440 -13.49222 -13.17836 -13.09032 -12.94723 -12.81246 -12.66691 -12.63049 -12.21796 -12.09456 -12.06664 -12.01371 -11.83160 -11.65929 -11.44172 -11.42684 -11.28105 -11.15923 -10.85266 -10.04200 -9.89548 -9.40064 -8.61848 -7.83267 -5.00688 0.76320 1.34813 1.44370 1.44987 1.54123 1.72788 1.88406 2.12834 2.61749 3.07890 3.27634 3.31369 3.50477 3.53827 3.57393 3.79246 3.88378 3.94408 3.96039 4.04700 4.17930 4.19749 4.25697 4.35072 4.39468 4.45877 4.52627 4.54350 4.55398 4.64977 4.69043 4.75252 4.78443 4.82183 4.90427 4.92180 5.00154 5.02830 5.08133 5.10455 5.18510 5.20638 5.22408 5.31067 5.37661 5.53987 5.58521 5.82652 5.85468 6.38425 6.64278 7.44947 7.52710 7.62823 8.26563 8.49214 9.41500 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007647 B = 0.005019 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3660.823048 B = 5577.548067 C = 8825.520660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.175 3.825 3 N -0.338 5.338 4 N -0.330 5.330 5 C 0.175 3.825 6 N -0.468 5.468 7 C 0.131 3.869 8 C -0.107 4.107 9 H 0.117 0.883 10 C 0.485 3.515 11 O -0.501 6.501 12 N -0.605 5.605 13 C 0.096 3.904 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.119 4.119 17 C 0.149 3.851 18 H 0.057 0.943 19 C 0.164 3.836 20 N -0.701 5.701 21 C -0.204 4.204 22 H 0.059 0.941 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.957 3.043 26 H -0.274 1.274 27 H -0.296 1.296 28 H -0.298 1.298 29 C -0.107 4.107 30 C -0.024 4.024 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.022 0.978 45 H 0.010 0.990 46 H 0.368 0.632 47 H 0.243 0.757 48 H 0.122 0.878 49 H 0.065 0.935 50 H 0.123 0.877 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.222 4.374 0.918 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 N -0.179 5.179 4 N -0.169 5.169 5 C -0.094 4.094 6 N -0.158 5.158 7 C 0.008 3.992 8 C -0.129 4.129 9 H 0.135 0.865 10 C 0.270 3.730 11 O -0.374 6.374 12 N -0.341 5.341 13 C -0.026 4.026 14 C -0.166 4.166 15 C -0.153 4.153 16 C -0.157 4.157 17 C 0.045 3.955 18 H 0.075 0.925 19 C 0.038 3.962 20 N -0.342 5.342 21 C -0.337 4.337 22 H 0.077 0.923 23 C -0.270 4.270 24 N -0.625 5.625 25 Si 0.789 3.211 26 H -0.199 1.199 27 H -0.224 1.224 28 H -0.226 1.226 29 C -0.145 4.145 30 C -0.063 4.063 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.040 0.960 45 H 0.028 0.972 46 H 0.200 0.800 47 H 0.052 0.948 48 H 0.140 0.860 49 H 0.084 0.916 50 H 0.141 0.859 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 19.999 5.573 0.382 20.765 hybrid contribution -2.266 -1.257 -0.097 2.593 sum 17.733 4.316 0.286 18.253 Atomic orbital electron populations 1.20360 0.81961 1.05280 1.05133 1.25201 0.98317 0.82620 1.03175 1.74366 0.96740 1.24920 1.21853 1.73909 1.12498 1.09655 1.20863 1.25516 0.88282 0.92343 1.03225 1.46125 1.07165 1.08612 1.53896 1.21659 0.98576 0.74761 1.04233 1.21518 0.95813 0.91783 1.03758 0.86520 1.20502 0.82979 0.87585 0.81922 1.91237 1.26654 1.80427 1.39049 1.47929 1.29142 1.05196 1.51855 1.22102 0.84859 1.01712 0.93903 1.21930 0.96850 0.95223 1.02591 1.21502 0.97652 0.96888 0.99210 1.21850 0.93363 1.00867 0.99665 1.21310 0.95362 0.81243 0.97593 0.92550 1.20887 0.85028 0.95283 0.95017 1.42264 1.00512 1.77278 1.14104 1.19471 0.85984 1.32212 0.96071 0.92272 1.25214 0.99879 1.04430 0.97495 1.69797 1.24402 1.54737 1.13568 0.85270 0.81181 0.76576 0.78069 1.19875 1.22356 1.22627 1.21754 0.96564 0.96757 0.99398 1.20477 0.89548 0.89685 1.06592 0.88397 0.87497 0.90072 0.89554 0.89401 0.87705 0.91326 0.88036 0.90800 0.91836 0.89926 0.91595 0.90699 0.96032 0.97195 0.80028 0.94761 0.85966 0.91595 0.85913 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 10.28 71.23 0.73 -0.85 16 2 C 0.18 5.19 8.07 138.14 1.11 6.31 16 3 N -0.34 -11.52 12.23 -50.46 -0.62 -12.13 16 4 N -0.33 -10.68 12.21 -50.28 -0.61 -11.29 16 5 C 0.17 4.49 7.75 138.14 1.07 5.56 16 6 N -0.47 -12.88 3.11 -504.65 -1.57 -14.45 16 7 C 0.13 3.63 5.58 86.53 0.48 4.12 16 8 C -0.11 -2.36 1.67 -11.39 -0.02 -2.37 16 9 H 0.12 2.17 7.14 -2.39 -0.02 2.15 16 10 C 0.48 14.59 6.55 87.65 0.57 15.17 16 11 O -0.50 -21.26 9.51 -3.03 -0.03 -21.29 16 12 N -0.61 -14.87 2.97 -795.08 -2.36 -17.23 16 13 C 0.10 1.36 5.47 86.35 0.47 1.83 16 14 C -0.13 -1.23 5.97 30.66 0.18 -1.05 16 15 C -0.11 -1.49 5.88 30.62 0.18 -1.31 16 16 C -0.12 -2.37 5.34 30.67 0.16 -2.20 16 17 C 0.15 4.29 2.91 44.98 0.13 4.42 16 18 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 19 C 0.16 6.62 4.89 86.38 0.42 7.05 16 20 N -0.70 -35.98 3.21 -343.45 -1.10 -37.08 16 21 C -0.20 -11.81 9.75 84.03 0.82 -10.99 16 22 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 24 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 25 Si 0.96 48.08 29.55 68.60 2.03 50.10 16 26 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 27 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 28 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 29 C -0.11 -1.61 4.76 30.79 0.15 -1.46 16 30 C -0.02 -0.34 6.33 30.03 0.19 -0.15 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.08 1.88 8.03 -2.39 -0.02 1.86 16 34 H 0.09 2.75 7.63 -2.39 -0.02 2.73 16 35 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 36 H 0.10 1.01 4.71 -2.39 -0.01 1.00 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.07 0.67 7.56 -2.39 -0.02 0.65 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.02 0.95 6.33 -2.39 -0.02 0.94 16 45 H 0.01 0.42 8.09 -2.39 -0.02 0.40 16 46 H 0.37 20.27 7.22 -92.70 -0.67 19.60 16 47 H 0.24 14.78 8.31 -92.71 -0.77 14.01 16 48 H 0.12 1.17 5.62 -2.39 -0.01 1.15 16 49 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 50 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -81.91 388.19 3.42 -78.49 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.27 Total: 25.20 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 7.13 Total: 19.84 kcal Atomic # 7 Polarization: -146.36 SS G_CDS: -5.98 Total: -152.35 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.03 Total: -21.29 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.10 kcal Total: -81.91 3.42 -78.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501898616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.484 kcal (2) G-P(sol) polarization free energy of solvation -81.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds