Wall clock time and date at job start Wed Apr 1 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30832 * 126.46190 * 2 1 4 4 N 1.28918 * 109.74016 * 179.97438 * 3 2 1 5 5 C 1.29841 * 109.47336 * 359.96561 * 4 3 2 6 6 N 1.34695 * 126.46494 * 179.97438 * 2 1 3 7 7 C 1.46252 * 128.84656 * 0.18819 * 6 2 1 8 8 C 1.53312 * 108.73016 * 162.85448 * 7 6 2 9 9 H 1.09002 * 109.43676 * 290.26605 * 8 7 6 10 10 C 1.50705 * 109.45207 * 170.32651 * 8 7 6 11 11 O 1.21282 * 120.00270 * 340.00721 * 10 8 7 12 12 N 1.34774 * 119.99967 * 160.01574 * 10 8 7 13 13 C 1.46928 * 120.63084 * 354.51866 * 12 10 8 14 14 C 1.53196 * 108.77304 * 233.63145 * 13 12 10 15 15 C 1.53040 * 109.31413 * 305.36334 * 14 13 12 16 16 C 1.53041 * 109.53530 * 61.36524 * 15 14 13 17 17 C 1.46997 * 120.61613 * 174.53889 * 12 10 8 18 18 H 1.08993 * 109.58518 * 246.14658 * 17 12 10 19 19 C 1.53003 * 109.62797 * 6.59962 * 17 12 10 20 20 N 1.46504 * 109.46863 * 292.72657 * 19 17 12 21 21 C 1.36933 * 119.99700 * 183.80421 * 20 19 17 22 22 H 1.07998 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99754 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00009 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46901 * 90.00083 * 25 23 21 27 27 H 1.48495 * 109.47433 * 210.00048 * 25 23 21 28 28 H 1.48505 * 109.47474 * 330.00478 * 25 23 21 29 29 C 1.53137 * 109.58150 * 50.29390 * 8 7 6 30 30 C 1.50809 * 128.51856 * 180.09076 * 5 4 3 31 31 H 1.08999 * 109.47435 * 89.97837 * 1 2 3 32 32 H 1.09001 * 109.47012 * 209.98175 * 1 2 3 33 33 H 1.09008 * 109.47101 * 329.97783 * 1 2 3 34 34 H 1.09004 * 109.59429 * 43.07633 * 7 6 2 35 35 H 1.09004 * 109.59373 * 282.63054 * 7 6 2 36 36 H 1.08992 * 109.58929 * 113.84728 * 13 12 10 37 37 H 1.08994 * 109.70554 * 353.48603 * 13 12 10 38 38 H 1.09009 * 109.49330 * 185.40978 * 14 13 12 39 39 H 1.09005 * 109.49690 * 65.31984 * 14 13 12 40 40 H 1.08995 * 109.45538 * 301.34769 * 15 14 13 41 41 H 1.08997 * 109.44550 * 181.38064 * 15 14 13 42 42 H 1.08999 * 109.49647 * 58.59250 * 16 15 14 43 43 H 1.09004 * 109.49287 * 178.64670 * 16 15 14 44 44 H 1.09001 * 109.47153 * 52.72686 * 19 17 12 45 45 H 1.09001 * 109.47209 * 172.72523 * 19 17 12 46 46 H 0.97001 * 119.99755 * 3.80390 * 20 19 17 47 47 H 0.97002 * 119.99843 * 179.97438 * 24 23 21 48 48 H 1.09006 * 109.50119 * 50.50942 * 29 8 7 49 49 H 1.08998 * 109.50681 * 170.57923 * 29 8 7 50 50 H 1.08992 * 109.73023 * 44.48067 * 30 5 4 51 51 H 1.08996 * 109.72817 * 283.79335 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2845 1.0522 0.0000 4 7 3.5192 0.6813 0.0005 5 6 3.5815 -0.6156 0.0016 6 7 2.3076 -1.0832 0.0005 7 6 1.9367 -2.4980 -0.0026 8 6 3.1551 -3.3253 -0.4287 9 1 3.3621 -3.1491 -1.4843 10 6 2.8689 -4.7889 -0.2110 11 8 1.9882 -5.1278 0.5508 12 7 3.5918 -5.7211 -0.8627 13 6 4.5796 -5.3282 -1.8770 14 6 4.2813 -6.0853 -3.1750 15 6 4.2400 -7.5877 -2.8866 16 6 3.1216 -7.8861 -1.8854 17 6 3.4064 -7.1501 -0.5724 18 1 4.3123 -7.5511 -0.1179 19 6 2.2257 -7.3314 0.3837 20 7 2.5636 -6.7615 1.6903 21 6 1.6856 -6.8761 2.7349 22 1 0.7439 -7.3862 2.5954 23 6 2.0059 -6.3365 3.9731 24 7 3.1537 -5.7153 4.1433 25 14 0.8079 -6.4922 5.3979 26 1 1.0899 -7.7428 6.1473 27 1 0.9627 -5.3263 6.3044 28 1 -0.5813 -6.5313 4.8746 29 6 4.3718 -2.9141 0.4053 30 6 4.8052 -1.4971 0.0045 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5136 33 1 -0.3634 0.8898 0.5142 34 1 1.1203 -2.6603 -0.7064 35 1 1.6242 -2.7961 0.9982 36 1 5.5811 -5.5807 -1.5287 37 1 4.5150 -4.2552 -2.0567 38 1 5.0627 -5.8763 -3.9057 39 1 3.3176 -5.7640 -3.5702 40 1 5.1956 -7.9035 -2.4683 41 1 4.0521 -8.1300 -3.8133 42 1 2.1688 -7.5479 -2.2929 43 1 3.0771 -8.9591 -1.6989 44 1 1.3503 -6.8223 -0.0195 45 1 2.0087 -8.3937 0.4957 46 1 3.4092 -6.3030 1.8155 47 1 3.3773 -5.3380 5.0085 48 1 4.1099 -2.9297 1.4633 49 1 5.1903 -3.6104 0.2228 50 1 5.5303 -1.1177 0.7243 51 1 5.2485 -1.5144 -0.9911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501898617.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:24 Heat of formation + Delta-G solvation = 89.281443 kcal Electronic energy + Delta-G solvation = -33051.806844 eV Core-core repulsion = 28989.124349 eV Total energy + Delta-G solvation = -4062.682495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.22925 -40.46271 -37.68736 -36.48863 -34.50349 -34.07730 -32.75498 -32.13315 -31.25754 -30.26044 -29.89444 -27.30155 -26.35769 -24.96484 -24.36267 -23.17025 -22.77623 -21.64692 -21.16227 -20.62144 -19.59698 -18.63996 -17.47268 -16.74203 -16.53269 -16.01633 -15.76277 -15.15819 -14.85546 -14.65124 -14.49407 -14.26553 -14.15117 -13.91230 -13.81140 -13.59363 -13.43848 -13.12649 -12.97420 -12.85222 -12.67232 -12.34120 -12.26460 -12.10701 -11.87714 -11.78597 -11.43339 -11.23874 -11.11213 -11.00798 -10.96701 -10.81897 -10.76741 -10.63362 -10.39321 -10.24122 -9.96466 -9.94827 -9.60053 -8.88827 -8.81014 -8.47863 -8.18796 -6.58671 -5.65266 -2.84636 1.89180 2.48837 2.92698 3.10397 3.25783 3.48209 3.53399 3.54532 4.14323 4.35178 4.39104 4.55542 4.59355 4.65732 4.67376 4.82221 4.82977 4.92785 5.03493 5.05988 5.13921 5.20619 5.30964 5.34100 5.35315 5.42986 5.53094 5.57356 5.64145 5.69400 5.70147 5.71308 5.75119 5.77650 5.86724 5.88693 5.92403 5.99123 6.04269 6.09330 6.18303 6.26271 6.27788 6.43677 6.55250 6.82379 6.93735 7.14506 7.78675 7.80780 8.52750 8.76044 8.82414 9.64741 10.22834 10.57370 11.58348 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007396 B = 0.005119 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3784.692263 B = 5468.078032 C = 8152.510409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.176 3.824 3 N -0.305 5.305 4 N -0.297 5.297 5 C 0.176 3.824 6 N -0.463 5.463 7 C 0.120 3.880 8 C -0.114 4.114 9 H 0.093 0.907 10 C 0.478 3.522 11 O -0.433 6.433 12 N -0.612 5.612 13 C 0.109 3.891 14 C -0.134 4.134 15 C -0.117 4.117 16 C -0.127 4.127 17 C 0.144 3.856 18 H 0.069 0.931 19 C 0.161 3.839 20 N -0.692 5.692 21 C -0.208 4.208 22 H 0.064 0.936 23 C -0.019 4.019 24 N -0.938 5.938 25 Si 0.899 3.101 26 H -0.293 1.293 27 H -0.294 1.294 28 H -0.285 1.285 29 C -0.116 4.116 30 C -0.030 4.030 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.015 0.985 46 H 0.379 0.621 47 H 0.250 0.750 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.102 0.898 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 2.248 -17.472 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 N -0.146 5.146 4 N -0.136 5.136 5 C -0.092 4.092 6 N -0.153 5.153 7 C -0.003 4.003 8 C -0.136 4.136 9 H 0.111 0.889 10 C 0.261 3.739 11 O -0.300 6.300 12 N -0.350 5.350 13 C -0.015 4.015 14 C -0.173 4.173 15 C -0.155 4.155 16 C -0.166 4.166 17 C 0.040 3.960 18 H 0.087 0.913 19 C 0.034 3.966 20 N -0.335 5.335 21 C -0.340 4.340 22 H 0.082 0.918 23 C -0.214 4.214 24 N -0.588 5.588 25 Si 0.732 3.268 26 H -0.221 1.221 27 H -0.221 1.221 28 H -0.211 1.211 29 C -0.154 4.154 30 C -0.070 4.070 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.131 0.869 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.056 0.944 45 H 0.033 0.967 46 H 0.213 0.787 47 H 0.060 0.940 48 H 0.107 0.893 49 H 0.107 0.893 50 H 0.121 0.879 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.376 3.462 -16.904 17.418 hybrid contribution -0.643 -1.201 0.830 1.595 sum 1.734 2.260 -16.074 16.325 Atomic orbital electron populations 1.20209 0.83885 1.04742 1.03786 1.24608 0.97058 0.82861 1.04586 1.74427 0.96181 1.23811 1.20200 1.74000 1.12317 1.08165 1.19153 1.24693 0.87227 0.92454 1.04798 1.46001 1.06907 1.08703 1.53735 1.21891 0.97615 0.74932 1.05866 1.21574 0.95882 0.94642 1.01543 0.88890 1.19813 0.85737 0.86030 0.82351 1.91194 1.28346 1.79292 1.31176 1.47755 1.40631 1.06014 1.40634 1.21665 0.92450 0.99337 0.88052 1.21921 1.02113 0.96083 0.97156 1.21491 0.99253 0.95681 0.99091 1.21909 0.98883 1.00476 0.95361 1.21500 1.00188 0.79465 0.94801 0.91328 1.20876 0.94218 0.95091 0.86439 1.42269 1.20762 1.65501 1.05017 1.19118 0.98310 1.27870 0.88723 0.91759 1.24579 0.97391 1.01852 0.97563 1.69635 1.22545 1.43491 1.23142 0.86284 0.80573 0.76886 0.83078 1.22112 1.22102 1.21096 1.21684 0.96845 0.95181 1.01706 1.20243 0.91156 0.91645 1.03915 0.89812 0.90123 0.88797 0.88744 0.86876 0.91720 0.90206 0.91182 0.91721 0.91830 0.92040 0.91608 0.90917 0.94368 0.96720 0.78694 0.94025 0.89254 0.89288 0.87950 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.29 36.01 0.37 -0.32 16 2 C 0.18 2.58 8.07 -155.45 -1.25 1.33 16 3 N -0.30 -5.30 12.23 32.70 0.40 -4.90 16 4 N -0.30 -5.18 12.21 32.76 0.40 -4.78 16 5 C 0.18 2.62 7.75 -155.30 -1.20 1.42 16 6 N -0.46 -6.66 3.11 -110.86 -0.35 -7.00 16 7 C 0.12 1.62 5.68 -4.01 -0.02 1.60 16 8 C -0.11 -1.43 1.70 -91.54 -0.16 -1.58 16 9 H 0.09 0.95 6.28 -51.93 -0.33 0.62 16 10 C 0.48 7.46 6.16 -10.98 -0.07 7.40 16 11 O -0.43 -8.92 9.44 5.56 0.05 -8.86 16 12 N -0.61 -8.17 2.97 -165.17 -0.49 -8.66 16 13 C 0.11 1.02 5.78 -3.71 -0.02 1.00 16 14 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 15 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 16 C -0.13 -1.44 5.37 -26.61 -0.14 -1.58 16 17 C 0.14 2.12 2.95 -67.56 -0.20 1.92 16 18 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 19 C 0.16 3.16 4.87 -4.04 -0.02 3.14 16 20 N -0.69 -16.98 3.16 -59.90 -0.19 -17.17 16 21 C -0.21 -5.80 9.60 -15.06 -0.14 -5.95 16 22 H 0.06 1.79 7.83 -52.49 -0.41 1.37 16 23 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 24 N -0.94 -28.10 13.06 55.49 0.72 -27.38 16 25 Si 0.90 22.88 29.55 -169.99 -5.02 17.86 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 29 C -0.12 -1.44 5.14 -26.40 -0.14 -1.58 16 30 C -0.03 -0.34 6.34 -27.57 -0.17 -0.51 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 33 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.11 1.87 7.55 -51.93 -0.39 1.48 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.64 5.44 -51.93 -0.28 0.35 16 38 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.04 0.81 6.50 -51.93 -0.34 0.47 16 45 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.38 9.86 6.93 -40.82 -0.28 9.58 16 47 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.09 1.44 8.12 -51.93 -0.42 1.02 16 49 H 0.09 0.99 7.62 -51.93 -0.40 0.60 16 50 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -35.19 390.79 -10.49 -45.68 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.32 Total: 6.14 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -3.59 Total: 3.19 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: 0.50 Total: -69.89 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.05 Total: -8.86 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.19 -10.49 -45.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501898617.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.962 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds