Wall clock time and date at job start Wed Apr 1 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30832 * 126.46190 * 2 1 4 4 N 1.28918 * 109.74016 * 179.97438 * 3 2 1 5 5 C 1.29841 * 109.47336 * 359.96561 * 4 3 2 6 6 N 1.34695 * 126.46494 * 179.97438 * 2 1 3 7 7 C 1.46252 * 128.84656 * 0.18819 * 6 2 1 8 8 C 1.53312 * 108.73016 * 162.85448 * 7 6 2 9 9 H 1.09002 * 109.43676 * 290.26605 * 8 7 6 10 10 C 1.50705 * 109.45207 * 170.32651 * 8 7 6 11 11 O 1.21282 * 120.00270 * 340.00721 * 10 8 7 12 12 N 1.34774 * 119.99967 * 160.01574 * 10 8 7 13 13 C 1.46928 * 120.63084 * 354.51866 * 12 10 8 14 14 C 1.53196 * 108.77304 * 233.63145 * 13 12 10 15 15 C 1.53040 * 109.31413 * 305.36334 * 14 13 12 16 16 C 1.53041 * 109.53530 * 61.36524 * 15 14 13 17 17 C 1.46997 * 120.61613 * 174.53889 * 12 10 8 18 18 H 1.08993 * 109.58518 * 246.14658 * 17 12 10 19 19 C 1.53003 * 109.62797 * 6.59962 * 17 12 10 20 20 N 1.46504 * 109.46863 * 292.72657 * 19 17 12 21 21 C 1.36933 * 119.99700 * 183.80421 * 20 19 17 22 22 H 1.07998 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99754 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00009 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46901 * 90.00083 * 25 23 21 27 27 H 1.48495 * 109.47433 * 210.00048 * 25 23 21 28 28 H 1.48505 * 109.47474 * 330.00478 * 25 23 21 29 29 C 1.53137 * 109.58150 * 50.29390 * 8 7 6 30 30 C 1.50809 * 128.51856 * 180.09076 * 5 4 3 31 31 H 1.08999 * 109.47435 * 89.97837 * 1 2 3 32 32 H 1.09001 * 109.47012 * 209.98175 * 1 2 3 33 33 H 1.09008 * 109.47101 * 329.97783 * 1 2 3 34 34 H 1.09004 * 109.59429 * 43.07633 * 7 6 2 35 35 H 1.09004 * 109.59373 * 282.63054 * 7 6 2 36 36 H 1.08992 * 109.58929 * 113.84728 * 13 12 10 37 37 H 1.08994 * 109.70554 * 353.48603 * 13 12 10 38 38 H 1.09009 * 109.49330 * 185.40978 * 14 13 12 39 39 H 1.09005 * 109.49690 * 65.31984 * 14 13 12 40 40 H 1.08995 * 109.45538 * 301.34769 * 15 14 13 41 41 H 1.08997 * 109.44550 * 181.38064 * 15 14 13 42 42 H 1.08999 * 109.49647 * 58.59250 * 16 15 14 43 43 H 1.09004 * 109.49287 * 178.64670 * 16 15 14 44 44 H 1.09001 * 109.47153 * 52.72686 * 19 17 12 45 45 H 1.09001 * 109.47209 * 172.72523 * 19 17 12 46 46 H 0.97001 * 119.99755 * 3.80390 * 20 19 17 47 47 H 0.97002 * 119.99843 * 179.97438 * 24 23 21 48 48 H 1.09006 * 109.50119 * 50.50942 * 29 8 7 49 49 H 1.08998 * 109.50681 * 170.57923 * 29 8 7 50 50 H 1.08992 * 109.73023 * 44.48067 * 30 5 4 51 51 H 1.08996 * 109.72817 * 283.79335 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2845 1.0522 0.0000 4 7 3.5192 0.6813 0.0005 5 6 3.5815 -0.6156 0.0016 6 7 2.3076 -1.0832 0.0005 7 6 1.9367 -2.4980 -0.0026 8 6 3.1551 -3.3253 -0.4287 9 1 3.3621 -3.1491 -1.4843 10 6 2.8689 -4.7889 -0.2110 11 8 1.9882 -5.1278 0.5508 12 7 3.5918 -5.7211 -0.8627 13 6 4.5796 -5.3282 -1.8770 14 6 4.2813 -6.0853 -3.1750 15 6 4.2400 -7.5877 -2.8866 16 6 3.1216 -7.8861 -1.8854 17 6 3.4064 -7.1501 -0.5724 18 1 4.3123 -7.5511 -0.1179 19 6 2.2257 -7.3314 0.3837 20 7 2.5636 -6.7615 1.6903 21 6 1.6856 -6.8761 2.7349 22 1 0.7439 -7.3862 2.5954 23 6 2.0059 -6.3365 3.9731 24 7 3.1537 -5.7153 4.1433 25 14 0.8079 -6.4922 5.3979 26 1 1.0899 -7.7428 6.1473 27 1 0.9627 -5.3263 6.3044 28 1 -0.5813 -6.5313 4.8746 29 6 4.3718 -2.9141 0.4053 30 6 4.8052 -1.4971 0.0045 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5136 33 1 -0.3634 0.8898 0.5142 34 1 1.1203 -2.6603 -0.7064 35 1 1.6242 -2.7961 0.9982 36 1 5.5811 -5.5807 -1.5287 37 1 4.5150 -4.2552 -2.0567 38 1 5.0627 -5.8763 -3.9057 39 1 3.3176 -5.7640 -3.5702 40 1 5.1956 -7.9035 -2.4683 41 1 4.0521 -8.1300 -3.8133 42 1 2.1688 -7.5479 -2.2929 43 1 3.0771 -8.9591 -1.6989 44 1 1.3503 -6.8223 -0.0195 45 1 2.0087 -8.3937 0.4957 46 1 3.4092 -6.3030 1.8155 47 1 3.3773 -5.3380 5.0085 48 1 4.1099 -2.9297 1.4633 49 1 5.1903 -3.6104 0.2228 50 1 5.5303 -1.1177 0.7243 51 1 5.2485 -1.5144 -0.9911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501898617.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:23 Heat of formation + Delta-G solvation = 67.853179 kcal Electronic energy + Delta-G solvation = -33052.736043 eV Core-core repulsion = 28989.124349 eV Total energy + Delta-G solvation = -4063.611694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.37984 -41.64341 -38.74707 -37.66714 -36.20261 -35.18376 -33.89864 -33.58889 -32.34462 -31.48411 -31.27801 -28.35892 -27.70609 -26.30980 -25.48813 -24.32165 -24.22236 -22.89555 -22.32198 -21.58196 -20.67919 -19.81756 -19.11139 -18.19306 -17.63235 -17.17456 -16.88443 -16.65013 -16.19400 -15.84643 -15.50495 -15.41306 -15.21614 -15.13252 -15.00305 -14.80434 -14.77836 -14.40375 -14.03713 -13.91297 -13.63090 -13.52182 -13.48341 -13.20478 -13.08851 -12.95808 -12.80645 -12.67905 -12.62225 -12.25175 -12.16911 -12.09158 -11.95527 -11.83938 -11.67998 -11.43552 -11.41135 -11.29082 -11.10925 -10.84398 -10.03161 -9.83024 -9.42396 -8.55892 -7.84101 -5.00367 0.77842 1.38166 1.42918 1.43546 1.51348 1.74059 1.90835 2.17413 2.60638 3.10158 3.31898 3.34098 3.50358 3.55268 3.59958 3.79291 3.86315 3.93251 3.98155 4.08922 4.14758 4.19531 4.23920 4.35953 4.40274 4.46298 4.54729 4.56357 4.58740 4.66955 4.68568 4.79672 4.80887 4.82771 4.92219 4.92839 5.00589 5.03974 5.08105 5.12647 5.17105 5.20397 5.22129 5.29452 5.37414 5.53490 5.57424 5.85175 5.86696 6.36918 6.68108 7.44589 7.56573 7.64195 8.24847 8.47643 9.39741 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007396 B = 0.005119 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3784.692263 B = 5468.078032 C = 8152.510409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.176 3.824 3 N -0.342 5.342 4 N -0.331 5.331 5 C 0.174 3.826 6 N -0.467 5.467 7 C 0.127 3.873 8 C -0.103 4.103 9 H 0.132 0.868 10 C 0.482 3.518 11 O -0.495 6.495 12 N -0.608 5.608 13 C 0.099 3.901 14 C -0.129 4.129 15 C -0.114 4.114 16 C -0.119 4.119 17 C 0.149 3.851 18 H 0.062 0.938 19 C 0.164 3.836 20 N -0.698 5.698 21 C -0.202 4.202 22 H 0.059 0.941 23 C -0.079 4.079 24 N -0.968 5.968 25 Si 0.955 3.045 26 H -0.289 1.289 27 H -0.302 1.302 28 H -0.278 1.278 29 C -0.106 4.106 30 C -0.022 4.022 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.009 0.991 46 H 0.369 0.631 47 H 0.242 0.758 48 H 0.042 0.958 49 H 0.107 0.893 50 H 0.108 0.892 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 1.861 -20.669 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 N -0.182 5.182 4 N -0.170 5.170 5 C -0.095 4.095 6 N -0.157 5.157 7 C 0.004 3.996 8 C -0.125 4.125 9 H 0.149 0.851 10 C 0.266 3.734 11 O -0.367 6.367 12 N -0.344 5.344 13 C -0.022 4.022 14 C -0.167 4.167 15 C -0.151 4.151 16 C -0.158 4.158 17 C 0.045 3.955 18 H 0.080 0.920 19 C 0.037 3.963 20 N -0.339 5.339 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.787 3.213 26 H -0.217 1.217 27 H -0.229 1.229 28 H -0.204 1.204 29 C -0.144 4.144 30 C -0.061 4.061 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.042 0.958 45 H 0.027 0.973 46 H 0.201 0.799 47 H 0.051 0.949 48 H 0.061 0.939 49 H 0.126 0.874 50 H 0.127 0.873 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.275 3.057 -20.173 20.665 hybrid contribution -0.939 -1.106 1.721 2.251 sum 2.336 1.951 -18.453 18.702 Atomic orbital electron populations 1.20409 0.81171 1.05337 1.05603 1.25359 0.98605 0.82371 1.02868 1.74348 0.96642 1.25190 1.22042 1.73914 1.12735 1.09532 1.20830 1.25350 0.88392 0.92299 1.03415 1.46099 1.06937 1.08820 1.53872 1.21768 0.98848 0.74679 1.04260 1.21528 0.95325 0.92058 1.03586 0.85083 1.20376 0.84409 0.87500 0.81072 1.91178 1.31257 1.80409 1.33839 1.47895 1.40720 1.05054 1.40757 1.22045 0.91686 1.00964 0.87516 1.21912 1.03085 0.95003 0.96698 1.21492 0.98078 0.96697 0.98873 1.21848 0.99936 1.00131 0.93909 1.21329 0.97525 0.81039 0.95560 0.92044 1.20906 0.96067 0.93787 0.85513 1.42304 1.19749 1.65746 1.06141 1.19387 0.98269 1.26165 0.89723 0.92268 1.25196 0.99065 1.02945 0.99802 1.69777 1.24122 1.45267 1.22955 0.85375 0.79160 0.76384 0.80376 1.21711 1.22942 1.20369 1.21560 0.97287 0.96706 0.98868 1.20409 0.89826 0.89567 1.06306 0.87271 0.89671 0.87994 0.86790 0.90738 0.90506 0.88083 0.88268 0.91924 0.91369 0.90197 0.92073 0.90497 0.95801 0.97291 0.79861 0.94933 0.93880 0.87424 0.87330 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.29 71.24 0.73 -0.56 16 2 C 0.18 5.09 8.07 138.14 1.11 6.20 16 3 N -0.34 -11.88 12.23 -50.46 -0.62 -12.49 16 4 N -0.33 -11.48 12.21 -50.27 -0.61 -12.10 16 5 C 0.17 5.02 7.75 138.14 1.07 6.09 16 6 N -0.47 -13.16 3.11 -504.66 -1.57 -14.73 16 7 C 0.13 3.41 5.68 86.53 0.49 3.90 16 8 C -0.10 -2.41 1.70 -11.39 -0.02 -2.43 16 9 H 0.13 2.10 6.28 -2.39 -0.01 2.09 16 10 C 0.48 14.78 6.16 87.66 0.54 15.32 16 11 O -0.50 -21.04 9.44 -3.04 -0.03 -21.07 16 12 N -0.61 -15.11 2.97 -794.86 -2.36 -17.47 16 13 C 0.10 1.45 5.78 86.36 0.50 1.95 16 14 C -0.13 -1.46 6.08 30.67 0.19 -1.28 16 15 C -0.11 -1.55 5.88 30.62 0.18 -1.37 16 16 C -0.12 -2.43 5.37 30.67 0.16 -2.27 16 17 C 0.15 4.26 2.95 44.96 0.13 4.40 16 18 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 19 C 0.16 6.55 4.87 86.38 0.42 6.97 16 20 N -0.70 -35.38 3.16 -343.44 -1.08 -36.47 16 21 C -0.20 -11.63 9.60 84.03 0.81 -10.83 16 22 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 23 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 24 N -0.97 -60.17 13.06 21.65 0.28 -59.88 16 25 Si 0.96 48.47 29.55 68.60 2.03 50.49 16 26 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 27 H -0.30 -15.58 7.11 99.48 0.71 -14.88 16 28 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 29 C -0.11 -2.50 5.14 30.81 0.16 -2.34 16 30 C -0.02 -0.44 6.34 30.05 0.19 -0.25 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.58 8.04 -2.39 -0.02 1.56 16 33 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.07 2.62 7.55 -2.38 -0.02 2.60 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.06 5.44 -2.39 -0.01 1.05 16 38 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.02 1.05 6.50 -2.39 -0.02 1.03 16 45 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.37 19.89 6.93 -92.71 -0.64 19.25 16 47 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 48 H 0.04 1.44 8.12 -2.38 -0.02 1.42 16 49 H 0.11 2.15 7.62 -2.39 -0.02 2.13 16 50 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -81.94 390.79 3.46 -78.48 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.29 Total: 25.94 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 7.14 Total: 19.29 kcal Atomic # 7 Polarization: -147.17 SS G_CDS: -5.97 Total: -153.14 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.03 Total: -21.07 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.49 kcal Total: -81.94 3.46 -78.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501898617.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.335 kcal (2) G-P(sol) polarization free energy of solvation -81.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds