Wall clock time and date at job start Wed Apr 1 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30301 * 126.34973 * 2 1 4 4 N 1.28521 * 110.05568 * 180.02562 * 3 2 1 5 5 C 1.31223 * 109.86261 * 0.02562 * 4 3 2 6 6 N 1.38576 * 126.47331 * 179.97438 * 5 4 3 7 7 C 1.46909 * 110.99728 * 230.70958 * 6 5 4 8 8 C 1.46897 * 111.00340 * 354.66452 * 6 5 4 9 9 H 1.08995 * 109.47008 * 54.99835 * 8 6 5 10 10 C 1.53004 * 109.46909 * 294.99947 * 8 6 5 11 11 C 1.50695 * 109.47212 * 174.99867 * 8 6 5 12 12 H 1.07998 * 119.99944 * 0.02562 * 11 8 6 13 13 C 1.37882 * 120.00107 * 179.97438 * 11 8 6 14 14 N 1.31515 * 119.99594 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00235 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.46981 * 60.00124 * 15 13 11 17 17 H 1.48496 * 109.47157 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47212 * 300.00045 * 15 13 11 19 19 N 1.36459 * 107.05085 * 0.24394 * 5 4 3 20 20 C 1.46501 * 127.13612 * 179.72012 * 19 5 4 21 21 C 1.52998 * 109.47033 * 277.46825 * 20 19 5 22 22 H 1.08999 * 109.47313 * 47.47126 * 21 20 19 23 23 C 1.50699 * 109.46976 * 167.47088 * 21 20 19 24 24 C 1.34520 * 125.78642 * 260.00031 * 23 21 20 25 25 C 1.41386 * 106.83561 * 180.02562 * 24 23 21 26 26 C 1.34508 * 106.84228 * 359.97438 * 25 24 23 27 27 O 1.34302 * 108.42529 * 359.73688 * 26 25 24 28 28 N 1.46898 * 109.47231 * 287.47056 * 21 20 19 29 29 C 1.46906 * 110.99864 * 316.80146 * 28 21 20 30 30 C 1.46894 * 111.00133 * 80.75471 * 28 21 20 31 31 H 1.08999 * 109.47281 * 95.16652 * 1 2 3 32 32 H 1.09000 * 109.47112 * 215.16880 * 1 2 3 33 33 H 1.09005 * 109.46728 * 335.16451 * 1 2 3 34 34 H 1.08992 * 109.46793 * 44.85717 * 7 6 5 35 35 H 1.08999 * 109.46606 * 164.85572 * 7 6 5 36 36 H 1.09001 * 109.46890 * 284.85211 * 7 6 5 37 37 H 1.09004 * 109.47206 * 60.00323 * 10 8 6 38 38 H 1.09002 * 109.46976 * 179.97438 * 10 8 6 39 39 H 1.08995 * 109.47194 * 299.99774 * 10 8 6 40 40 H 0.97008 * 119.99959 * 179.97438 * 14 13 11 41 41 H 1.09001 * 109.46928 * 37.46760 * 20 19 5 42 42 H 1.08994 * 109.46921 * 157.46772 * 20 19 5 43 43 H 1.08000 * 126.58154 * 0.03249 * 24 23 21 44 44 H 1.08001 * 126.57380 * 179.97438 * 25 24 23 45 45 H 1.08009 * 125.78733 * 180.02562 * 26 25 24 46 46 H 1.09001 * 109.46928 * 59.16133 * 29 28 21 47 47 H 1.08994 * 109.47275 * 179.15808 * 29 28 21 48 48 H 1.09000 * 109.47438 * 299.16526 * 29 28 21 49 49 H 1.08997 * 109.47129 * 70.31012 * 30 28 21 50 50 H 1.09000 * 109.47483 * 190.30683 * 30 28 21 51 51 H 1.09002 * 109.47569 * 310.31046 * 30 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0495 0.0000 4 7 3.5129 0.6889 -0.0005 5 6 3.5945 -0.6208 -0.0015 6 7 4.7580 -1.3736 -0.0028 7 6 4.7274 -2.3881 -1.0649 8 6 5.9417 -0.5132 -0.1305 9 1 5.9298 0.2403 0.6569 10 6 5.9261 0.1762 -1.4964 11 6 7.1878 -1.3512 -0.0050 12 1 7.1084 -2.4166 0.1533 13 6 8.4294 -0.7581 -0.0935 14 7 8.5260 0.5392 -0.2868 15 14 9.9740 -1.7970 0.0614 16 1 9.9897 -2.8235 -1.0115 17 1 11.1706 -0.9271 -0.0677 18 1 9.9898 -2.4661 1.3870 19 7 2.3174 -1.1014 -0.0071 20 6 1.9009 -2.5059 -0.0158 21 6 1.9390 -3.0402 -1.4489 22 1 2.8832 -2.7605 -1.9160 23 6 1.8140 -4.5419 -1.4286 24 6 2.8286 -5.4173 -1.5459 25 6 2.2632 -6.7113 -1.4747 26 6 0.9372 -6.5491 -1.3176 27 8 0.6715 -5.2331 -1.2842 28 7 0.8247 -2.4664 -2.2152 29 6 -0.4148 -2.4728 -1.4268 30 6 1.1474 -1.1101 -2.6779 31 1 -0.3634 -0.0925 -1.0235 32 1 -0.3633 -0.8401 0.5919 33 1 -0.3633 0.9327 0.4317 34 1 4.3634 -1.9368 -1.9878 35 1 5.7326 -2.7786 -1.2232 36 1 4.0636 -3.2014 -0.7715 37 1 5.0247 0.7824 -1.5871 38 1 6.8042 0.8150 -1.5910 39 1 5.9380 -0.5773 -2.2838 40 1 9.3995 0.9566 -0.3487 41 1 2.5782 -3.0895 0.6077 42 1 0.8867 -2.5865 0.3752 43 1 3.8743 -5.1778 -1.6705 44 1 2.7942 -7.6498 -1.5349 45 1 0.2100 -7.3427 -1.2283 46 1 -0.2680 -1.8949 -0.5143 47 1 -1.2200 -2.0291 -2.0122 48 1 -0.6761 -3.4991 -1.1687 49 1 1.9093 -1.1631 -3.4555 50 1 0.2498 -0.6403 -3.0802 51 1 1.5223 -0.5203 -1.8414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001543129072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:25 Heat of formation + Delta-G solvation = 172.815491 kcal Electronic energy + Delta-G solvation = -33644.057326 eV Core-core repulsion = 29584.997140 eV Total energy + Delta-G solvation = -4059.060187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.05848 -42.59174 -38.71954 -37.53731 -34.29529 -33.26888 -32.97242 -32.13478 -31.03169 -28.90922 -28.37995 -28.19663 -26.96452 -25.43559 -25.23169 -24.90208 -22.30969 -21.80819 -21.78513 -20.63734 -20.03683 -19.41271 -17.73710 -17.22361 -16.48012 -16.30274 -16.03923 -15.79904 -15.54580 -15.27714 -14.80102 -14.48616 -14.33685 -14.03058 -13.79437 -13.49907 -13.17104 -13.06306 -12.95249 -12.92271 -12.72144 -12.50211 -12.29531 -12.11205 -11.84030 -11.73901 -11.56650 -11.47532 -11.18912 -11.11239 -10.88494 -10.82695 -10.66455 -10.25229 -10.18822 -10.08781 -10.00155 -9.77355 -9.17168 -8.96776 -8.68213 -8.44800 -8.31503 -7.40460 -6.08118 -4.15920 1.54186 2.10808 2.41185 2.53327 2.88647 3.27494 3.31721 3.33326 3.34640 3.63334 4.20693 4.33869 4.40955 4.47114 4.50678 4.62229 4.84004 4.89604 4.95363 4.96961 5.02321 5.12452 5.23285 5.24047 5.36253 5.43247 5.47030 5.54990 5.56081 5.68142 5.69501 5.76015 5.78480 5.80980 5.91241 5.99035 6.05995 6.21975 6.34008 6.39732 6.64292 6.70917 6.74292 6.87457 6.99112 7.01905 7.09357 7.36239 7.56397 7.67947 7.91110 8.20672 8.35950 8.85157 9.29315 9.48903 10.98169 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010916 B = 0.004299 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.488632 B = 6510.872573 C = 8520.076773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.143 3.857 3 N -0.278 5.278 4 N -0.314 5.314 5 C 0.391 3.609 6 N -0.445 5.445 7 C 0.017 3.983 8 C 0.228 3.772 9 H 0.058 0.942 10 C -0.169 4.169 11 C -0.518 4.518 12 H 0.064 0.936 13 C 0.066 3.934 14 N -0.882 5.882 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 N -0.494 5.494 20 C 0.077 3.923 21 C 0.131 3.869 22 H 0.134 0.866 23 C 0.006 3.994 24 C -0.198 4.198 25 C -0.209 4.209 26 C -0.046 4.046 27 O -0.167 6.167 28 N -0.527 5.527 29 C -0.016 4.016 30 C -0.003 4.003 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.031 0.969 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.032 0.968 38 H 0.093 0.907 39 H 0.021 0.979 40 H 0.264 0.736 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.201 0.799 46 H 0.053 0.947 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.820 -11.640 -2.986 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 N -0.118 5.118 4 N -0.158 5.158 5 C 0.035 3.965 6 N -0.168 5.168 7 C -0.130 4.130 8 C 0.124 3.876 9 H 0.076 0.924 10 C -0.228 4.228 11 C -0.557 4.557 12 H 0.082 0.918 13 C -0.137 4.137 14 N -0.520 5.520 15 Si 0.727 3.273 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 N -0.193 5.193 20 C -0.049 4.049 21 C 0.021 3.979 22 H 0.151 0.849 23 C -0.045 4.045 24 C -0.218 4.218 25 C -0.228 4.228 26 C -0.113 4.113 27 O -0.063 6.063 28 N -0.250 5.250 29 C -0.163 4.163 30 C -0.151 4.151 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.050 0.950 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.111 0.889 39 H 0.040 0.960 40 H 0.074 0.926 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.170 0.830 44 H 0.166 0.834 45 H 0.217 0.783 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.090 0.910 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.526 -10.412 -2.932 21.453 hybrid contribution 0.811 -1.427 0.124 1.646 sum -17.715 -11.839 -2.808 21.491 Atomic orbital electron populations 1.20599 0.84922 1.03941 1.03241 1.24216 0.96002 0.82830 1.09236 1.74001 0.97064 1.23963 1.16762 1.74883 1.10146 1.06526 1.24270 1.23421 0.83945 0.90086 0.98999 1.59272 0.99200 1.15106 1.43185 1.22938 1.05102 0.93933 0.91057 1.19438 0.82388 0.90619 0.95184 0.92380 1.22378 1.02324 1.00363 0.97724 1.20961 0.89411 0.94415 1.50887 0.91802 1.24882 0.98956 0.95012 0.94871 1.69906 1.24495 1.09214 1.48379 0.86536 0.82110 0.79937 0.78675 1.20248 1.21216 1.20169 1.46260 1.06269 1.07155 1.59611 1.22613 1.03637 0.79680 0.98923 1.21215 0.98309 0.85813 0.92540 0.84922 1.21857 0.83723 0.92768 1.06141 1.21689 1.00308 0.92125 1.07686 1.21816 0.94295 0.98721 1.07992 1.24031 0.97547 0.83184 1.06568 1.84025 1.33962 1.17852 1.70470 1.62240 1.02399 1.22053 1.38319 1.23259 0.91976 1.03229 0.97829 1.22944 1.02182 0.88603 1.01352 0.89960 0.90549 0.88951 0.95041 0.87730 0.92267 0.94959 0.88881 0.96024 0.92615 0.87689 0.87597 0.83034 0.83415 0.78279 0.92919 0.90902 0.90527 0.91452 0.90978 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 8.16 36.00 0.29 -0.40 16 2 C 0.14 2.21 5.27 -154.01 -0.81 1.40 16 3 N -0.28 -5.51 12.18 32.99 0.40 -5.11 16 4 N -0.31 -7.05 9.52 30.32 0.29 -6.76 16 5 C 0.39 7.87 6.66 -318.87 -2.12 5.75 16 6 N -0.45 -9.38 4.82 -176.08 -0.85 -10.23 16 7 C 0.02 0.29 6.55 60.07 0.39 0.68 16 8 C 0.23 5.70 2.03 -68.87 -0.14 5.56 16 9 H 0.06 1.68 7.88 -51.93 -0.41 1.27 16 10 C -0.17 -4.16 8.32 37.16 0.31 -3.85 16 11 C -0.52 -13.53 7.66 -34.44 -0.26 -13.79 16 12 H 0.06 1.61 6.95 -52.49 -0.36 1.25 16 13 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 14 N -0.88 -24.76 11.32 55.43 0.63 -24.13 16 15 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 N -0.49 -7.78 1.94 -114.08 -0.22 -8.00 16 20 C 0.08 0.96 4.38 -4.04 -0.02 0.94 16 21 C 0.13 1.59 1.54 -68.87 -0.11 1.48 16 22 H 0.13 1.83 3.87 -51.93 -0.20 1.63 16 23 C 0.01 0.08 5.99 -35.62 -0.21 -0.14 16 24 C -0.20 -2.27 10.18 -39.70 -0.40 -2.67 16 25 C -0.21 -2.04 10.91 -39.70 -0.43 -2.47 16 26 C -0.05 -0.40 12.09 29.41 0.36 -0.05 16 27 O -0.17 -1.81 8.63 5.71 0.05 -1.77 16 28 N -0.53 -6.04 4.88 -244.59 -1.19 -7.24 16 29 C -0.02 -0.14 7.46 60.07 0.45 0.31 16 30 C 0.00 -0.04 8.22 60.06 0.49 0.46 16 31 H 0.08 0.73 5.27 -51.93 -0.27 0.45 16 32 H 0.08 0.62 6.10 -51.93 -0.32 0.30 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.55 6.05 -51.93 -0.31 0.23 16 35 H 0.10 1.95 6.18 -51.93 -0.32 1.63 16 36 H 0.06 0.86 3.44 -51.93 -0.18 0.69 16 37 H 0.03 0.78 6.08 -51.93 -0.32 0.47 16 38 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 39 H 0.02 0.49 6.84 -51.93 -0.35 0.14 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.10 1.37 7.40 -51.93 -0.38 0.99 16 42 H 0.11 1.10 5.08 -51.93 -0.26 0.84 16 43 H 0.15 1.67 7.49 -52.49 -0.39 1.28 16 44 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.20 0.99 8.06 -52.48 -0.42 0.57 16 46 H 0.05 0.45 1.50 -51.93 -0.08 0.38 16 47 H 0.07 0.57 8.00 -51.93 -0.42 0.16 16 48 H 0.08 0.71 6.10 -51.93 -0.32 0.39 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.75 7.69 -51.93 -0.40 0.35 16 51 H 0.06 0.82 2.85 -51.93 -0.15 0.67 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -31.57 366.42 -9.30 -40.87 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.59 Total: 6.40 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.31 Total: -5.13 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.95 Total: -61.47 kcal Atomic # 8 Polarization: -1.81 SS G_CDS: 0.05 Total: -1.77 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.57 -9.30 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543129072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.690 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds