Wall clock time and date at job start Wed Apr 1 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30301 * 126.34973 * 2 1 4 4 N 1.28521 * 110.05568 * 180.02562 * 3 2 1 5 5 C 1.31223 * 109.86261 * 0.02562 * 4 3 2 6 6 N 1.38576 * 126.47331 * 179.97438 * 5 4 3 7 7 C 1.46909 * 110.99728 * 230.70958 * 6 5 4 8 8 C 1.46897 * 111.00340 * 354.66452 * 6 5 4 9 9 H 1.08995 * 109.47008 * 54.99835 * 8 6 5 10 10 C 1.53004 * 109.46909 * 294.99947 * 8 6 5 11 11 C 1.50695 * 109.47212 * 174.99867 * 8 6 5 12 12 H 1.07998 * 119.99944 * 0.02562 * 11 8 6 13 13 C 1.37882 * 120.00107 * 179.97438 * 11 8 6 14 14 N 1.31515 * 119.99594 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00235 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.46981 * 60.00124 * 15 13 11 17 17 H 1.48496 * 109.47157 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47212 * 300.00045 * 15 13 11 19 19 N 1.36459 * 107.05085 * 0.24394 * 5 4 3 20 20 C 1.46501 * 127.13612 * 179.72012 * 19 5 4 21 21 C 1.52998 * 109.47033 * 277.46825 * 20 19 5 22 22 H 1.08999 * 109.47313 * 47.47126 * 21 20 19 23 23 C 1.50699 * 109.46976 * 167.47088 * 21 20 19 24 24 C 1.34520 * 125.78642 * 260.00031 * 23 21 20 25 25 C 1.41386 * 106.83561 * 180.02562 * 24 23 21 26 26 C 1.34508 * 106.84228 * 359.97438 * 25 24 23 27 27 O 1.34302 * 108.42529 * 359.73688 * 26 25 24 28 28 N 1.46898 * 109.47231 * 287.47056 * 21 20 19 29 29 C 1.46906 * 110.99864 * 316.80146 * 28 21 20 30 30 C 1.46894 * 111.00133 * 80.75471 * 28 21 20 31 31 H 1.08999 * 109.47281 * 95.16652 * 1 2 3 32 32 H 1.09000 * 109.47112 * 215.16880 * 1 2 3 33 33 H 1.09005 * 109.46728 * 335.16451 * 1 2 3 34 34 H 1.08992 * 109.46793 * 44.85717 * 7 6 5 35 35 H 1.08999 * 109.46606 * 164.85572 * 7 6 5 36 36 H 1.09001 * 109.46890 * 284.85211 * 7 6 5 37 37 H 1.09004 * 109.47206 * 60.00323 * 10 8 6 38 38 H 1.09002 * 109.46976 * 179.97438 * 10 8 6 39 39 H 1.08995 * 109.47194 * 299.99774 * 10 8 6 40 40 H 0.97008 * 119.99959 * 179.97438 * 14 13 11 41 41 H 1.09001 * 109.46928 * 37.46760 * 20 19 5 42 42 H 1.08994 * 109.46921 * 157.46772 * 20 19 5 43 43 H 1.08000 * 126.58154 * 0.03249 * 24 23 21 44 44 H 1.08001 * 126.57380 * 179.97438 * 25 24 23 45 45 H 1.08009 * 125.78733 * 180.02562 * 26 25 24 46 46 H 1.09001 * 109.46928 * 59.16133 * 29 28 21 47 47 H 1.08994 * 109.47275 * 179.15808 * 29 28 21 48 48 H 1.09000 * 109.47438 * 299.16526 * 29 28 21 49 49 H 1.08997 * 109.47129 * 70.31012 * 30 28 21 50 50 H 1.09000 * 109.47483 * 190.30683 * 30 28 21 51 51 H 1.09002 * 109.47569 * 310.31046 * 30 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0495 0.0000 4 7 3.5129 0.6889 -0.0005 5 6 3.5945 -0.6208 -0.0015 6 7 4.7580 -1.3736 -0.0028 7 6 4.7274 -2.3881 -1.0649 8 6 5.9417 -0.5132 -0.1305 9 1 5.9298 0.2403 0.6569 10 6 5.9261 0.1762 -1.4964 11 6 7.1878 -1.3512 -0.0050 12 1 7.1084 -2.4166 0.1533 13 6 8.4294 -0.7581 -0.0935 14 7 8.5260 0.5392 -0.2868 15 14 9.9740 -1.7970 0.0614 16 1 9.9897 -2.8235 -1.0115 17 1 11.1706 -0.9271 -0.0677 18 1 9.9898 -2.4661 1.3870 19 7 2.3174 -1.1014 -0.0071 20 6 1.9009 -2.5059 -0.0158 21 6 1.9390 -3.0402 -1.4489 22 1 2.8832 -2.7605 -1.9160 23 6 1.8140 -4.5419 -1.4286 24 6 2.8286 -5.4173 -1.5459 25 6 2.2632 -6.7113 -1.4747 26 6 0.9372 -6.5491 -1.3176 27 8 0.6715 -5.2331 -1.2842 28 7 0.8247 -2.4664 -2.2152 29 6 -0.4148 -2.4728 -1.4268 30 6 1.1474 -1.1101 -2.6779 31 1 -0.3634 -0.0925 -1.0235 32 1 -0.3633 -0.8401 0.5919 33 1 -0.3633 0.9327 0.4317 34 1 4.3634 -1.9368 -1.9878 35 1 5.7326 -2.7786 -1.2232 36 1 4.0636 -3.2014 -0.7715 37 1 5.0247 0.7824 -1.5871 38 1 6.8042 0.8150 -1.5910 39 1 5.9380 -0.5773 -2.2838 40 1 9.3995 0.9566 -0.3487 41 1 2.5782 -3.0895 0.6077 42 1 0.8867 -2.5865 0.3752 43 1 3.8743 -5.1778 -1.6705 44 1 2.7942 -7.6498 -1.5349 45 1 0.2100 -7.3427 -1.2283 46 1 -0.2680 -1.8949 -0.5143 47 1 -1.2200 -2.0291 -2.0122 48 1 -0.6761 -3.4991 -1.1687 49 1 1.9093 -1.1631 -3.4555 50 1 0.2498 -0.6403 -3.0802 51 1 1.5223 -0.5203 -1.8414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001543129072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:24 Heat of formation + Delta-G solvation = 152.587645 kcal Electronic energy + Delta-G solvation = -33644.934472 eV Core-core repulsion = 29584.997140 eV Total energy + Delta-G solvation = -4059.937332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.33935 -43.45485 -39.72110 -39.21629 -35.58706 -34.80208 -34.05697 -33.28227 -32.10149 -30.76739 -29.47633 -29.13350 -28.03092 -27.24653 -26.77351 -26.08063 -23.60090 -23.04536 -22.60053 -21.76358 -21.34016 -20.72849 -18.74852 -18.54785 -17.88050 -17.57588 -17.26588 -17.06889 -16.69297 -16.41247 -16.15309 -15.77245 -15.63405 -15.14419 -15.06270 -14.86608 -14.46686 -14.19291 -14.01258 -13.84050 -13.72463 -13.54570 -13.43939 -13.32434 -13.06221 -12.94799 -12.91516 -12.73754 -12.65671 -12.51341 -12.40953 -12.36099 -12.29127 -12.05959 -11.94466 -11.46364 -11.30577 -10.98437 -10.80064 -10.66525 -10.50505 -9.47881 -9.22693 -8.99336 -8.13252 -6.28435 0.66960 0.86563 1.21181 1.45246 1.47320 1.54912 1.73765 1.86225 2.08296 2.41172 2.73542 2.91865 3.16558 3.32179 3.44258 3.47498 3.63771 3.95363 3.98521 4.02191 4.09050 4.15492 4.19758 4.28940 4.32721 4.38161 4.45773 4.48710 4.57443 4.58356 4.71549 4.78542 4.81705 4.88319 4.90764 4.93847 4.97529 5.04661 5.05662 5.06227 5.08872 5.25350 5.42430 5.55930 5.59016 5.60540 5.74912 5.82267 5.89830 6.01461 6.18105 6.24264 6.51981 6.80076 7.40371 7.85516 8.93248 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010916 B = 0.004299 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.488632 B = 6510.872573 C = 8520.076773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.177 3.823 3 N -0.326 5.326 4 N -0.363 5.363 5 C 0.372 3.628 6 N -0.452 5.452 7 C 0.026 3.974 8 C 0.241 3.759 9 H 0.008 0.992 10 C -0.148 4.148 11 C -0.527 4.527 12 H 0.071 0.929 13 C 0.016 3.984 14 N -0.917 5.917 15 Si 0.967 3.033 16 H -0.264 1.264 17 H -0.288 1.288 18 H -0.271 1.271 19 N -0.483 5.483 20 C 0.074 3.926 21 C 0.139 3.861 22 H 0.111 0.889 23 C -0.008 4.008 24 C -0.213 4.213 25 C -0.226 4.226 26 C -0.032 4.032 27 O -0.172 6.172 28 N -0.530 5.530 29 C -0.016 4.016 30 C 0.002 3.998 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.028 0.972 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.027 0.973 38 H 0.064 0.936 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.099 0.901 42 H 0.136 0.864 43 H 0.147 0.853 44 H 0.165 0.835 45 H 0.240 0.760 46 H 0.059 0.941 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.049 0.951 50 H 0.094 0.906 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.624 -14.684 -3.083 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 N -0.164 5.164 4 N -0.207 5.207 5 C 0.015 3.985 6 N -0.174 5.174 7 C -0.120 4.120 8 C 0.135 3.865 9 H 0.026 0.974 10 C -0.208 4.208 11 C -0.565 4.565 12 H 0.089 0.911 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.792 3.208 16 H -0.189 1.189 17 H -0.213 1.213 18 H -0.197 1.197 19 N -0.181 5.181 20 C -0.050 4.050 21 C 0.029 3.971 22 H 0.129 0.871 23 C -0.059 4.059 24 C -0.233 4.233 25 C -0.245 4.245 26 C -0.099 4.099 27 O -0.067 6.067 28 N -0.253 5.253 29 C -0.163 4.163 30 C -0.146 4.146 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.047 0.953 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.153 0.847 43 H 0.165 0.835 44 H 0.182 0.818 45 H 0.256 0.744 46 H 0.076 0.924 47 H 0.109 0.891 48 H 0.099 0.901 49 H 0.068 0.932 50 H 0.112 0.888 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -21.368 -13.478 -3.033 25.445 hybrid contribution 1.481 -0.541 0.129 1.582 sum -19.888 -14.019 -2.904 24.505 Atomic orbital electron populations 1.20956 0.80663 1.06034 1.05247 1.25227 0.97836 0.81600 1.04419 1.73904 0.96666 1.25912 1.19961 1.74735 1.12112 1.08229 1.25585 1.23204 0.85058 0.89848 1.00377 1.59130 0.98621 1.14940 1.44736 1.22952 1.05042 0.93738 0.90249 1.18971 0.84204 0.90051 0.93261 0.97423 1.22123 1.00606 0.99868 0.98161 1.21254 0.89995 0.94809 1.50458 0.91065 1.25750 1.02182 0.96033 0.94449 1.70071 1.25056 1.11002 1.49418 0.85469 0.77919 0.78389 0.79007 1.18855 1.21319 1.19656 1.46355 1.04607 1.08605 1.58541 1.22902 1.04945 0.77552 0.99577 1.20935 0.97841 0.86530 0.91805 0.87123 1.21632 0.84235 0.92352 1.07723 1.21883 1.00297 0.93350 1.07750 1.22092 0.95017 0.98676 1.08711 1.24827 0.98121 0.82980 1.04019 1.84016 1.33461 1.18733 1.70528 1.62258 1.02949 1.21211 1.38878 1.23346 0.91098 1.03836 0.98011 1.22866 1.02620 0.89002 1.00089 0.87911 0.87505 0.87713 0.95314 0.88967 0.89186 0.95441 0.91703 0.95159 0.92770 0.88226 0.84666 0.83542 0.81753 0.74369 0.92363 0.89066 0.90120 0.93226 0.88784 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 8.16 71.23 0.58 -0.60 16 2 C 0.18 5.27 5.27 137.64 0.73 5.99 16 3 N -0.33 -13.21 12.18 -49.54 -0.60 -13.81 16 4 N -0.36 -17.15 9.52 -58.00 -0.55 -17.70 16 5 C 0.37 15.50 6.66 260.11 1.73 17.24 16 6 N -0.45 -19.78 4.82 -711.00 -3.42 -23.21 16 7 C 0.03 0.95 6.55 127.69 0.84 1.79 16 8 C 0.24 12.73 2.03 44.17 0.09 12.82 16 9 H 0.01 0.49 7.88 -2.39 -0.02 0.47 16 10 C -0.15 -7.75 8.32 71.98 0.60 -7.15 16 11 C -0.53 -28.36 7.66 25.60 0.20 -28.16 16 12 H 0.07 3.65 6.95 -2.91 -0.02 3.63 16 13 C 0.02 0.85 5.30 84.66 0.45 1.30 16 14 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 15 Si 0.97 42.75 29.54 68.60 2.03 44.77 16 16 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 N -0.48 -14.94 1.94 -514.85 -1.00 -15.94 16 20 C 0.07 1.71 4.38 86.38 0.38 2.09 16 21 C 0.14 3.15 1.54 44.17 0.07 3.22 16 22 H 0.11 3.02 3.87 -2.39 -0.01 3.01 16 23 C -0.01 -0.18 5.99 24.83 0.15 -0.03 16 24 C -0.21 -4.56 10.18 22.19 0.23 -4.33 16 25 C -0.23 -3.81 10.91 22.19 0.24 -3.56 16 26 C -0.03 -0.45 12.09 66.97 0.81 0.36 16 27 O -0.17 -3.15 8.63 -2.50 -0.02 -3.17 16 28 N -0.53 -10.85 4.88 -927.75 -4.53 -15.38 16 29 C -0.02 -0.23 7.46 127.69 0.95 0.72 16 30 C 0.00 0.06 8.22 127.69 1.05 1.11 16 31 H 0.10 1.40 5.27 -2.39 -0.01 1.38 16 32 H 0.11 1.20 6.10 -2.39 -0.01 1.18 16 33 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.03 1.03 6.05 -2.39 -0.01 1.02 16 35 H 0.09 3.52 6.18 -2.39 -0.01 3.50 16 36 H 0.09 2.63 3.44 -2.39 -0.01 2.63 16 37 H 0.03 1.42 6.08 -2.38 -0.01 1.40 16 38 H 0.06 3.75 6.07 -2.39 -0.01 3.73 16 39 H 0.03 1.46 6.84 -2.39 -0.02 1.44 16 40 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 41 H 0.10 2.46 7.40 -2.39 -0.02 2.45 16 42 H 0.14 2.33 5.08 -2.39 -0.01 2.31 16 43 H 0.15 3.16 7.49 -2.91 -0.02 3.14 16 44 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 45 H 0.24 1.16 8.06 -2.91 -0.02 1.14 16 46 H 0.06 0.74 1.50 -2.39 0.00 0.73 16 47 H 0.09 1.00 8.00 -2.39 -0.02 0.98 16 48 H 0.08 1.14 6.10 -2.39 -0.01 1.12 16 49 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.09 1.70 7.69 -2.39 -0.02 1.68 16 51 H 0.04 1.00 2.85 -2.39 -0.01 0.99 16 Total: -1.00 -73.75 366.42 2.22 -71.53 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.99 Total: 23.48 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 9.09 Total: 2.80 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -9.87 Total: -139.41 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: -0.02 Total: -3.17 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -73.75 2.22 -71.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543129072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.120 kcal (2) G-P(sol) polarization free energy of solvation -73.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds