Wall clock time and date at job start Wed Apr 1 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30839 * 126.46396 * 2 1 4 4 N 1.28906 * 109.73988 * 180.02562 * 3 2 1 5 5 C 1.29840 * 109.48316 * 0.03234 * 4 3 2 6 6 N 1.34701 * 126.46776 * 179.97438 * 2 1 3 7 7 C 1.46249 * 128.84927 * 359.86508 * 6 2 1 8 8 C 1.53324 * 108.72782 * 197.15087 * 7 6 2 9 9 H 1.08999 * 109.45316 * 69.70075 * 8 7 6 10 10 C 1.50696 * 109.44879 * 189.65193 * 8 7 6 11 11 O 1.21285 * 120.00319 * 34.78748 * 10 8 7 12 12 N 1.34776 * 119.99816 * 214.78997 * 10 8 7 13 13 C 1.46927 * 120.63243 * 354.58454 * 12 10 8 14 14 C 1.53185 * 108.77795 * 233.61156 * 13 12 10 15 15 C 1.53043 * 109.31588 * 305.36314 * 14 13 12 16 16 C 1.53046 * 109.53499 * 61.36371 * 15 14 13 17 17 H 1.08997 * 109.49691 * 58.59089 * 16 15 14 18 18 C 1.53003 * 109.52256 * 178.66922 * 16 15 14 19 19 N 1.46500 * 109.47180 * 294.85618 * 18 16 15 20 20 C 1.36935 * 119.99686 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00149 * 359.97438 * 20 19 18 22 22 C 1.38817 * 119.99580 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00112 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99925 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46895 * 59.99959 * 24 22 20 26 26 H 1.48497 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47239 * 300.00012 * 24 22 20 28 28 C 1.46929 * 120.63233 * 174.59109 * 12 10 8 29 29 C 1.53137 * 109.56173 * 309.67437 * 8 7 6 30 30 C 1.50796 * 128.52668 * 179.91120 * 5 4 3 31 31 H 1.08997 * 109.47403 * 89.97408 * 1 2 3 32 32 H 1.09002 * 109.46856 * 209.96854 * 1 2 3 33 33 H 1.08993 * 109.47099 * 329.97067 * 1 2 3 34 34 H 1.09003 * 109.60778 * 77.36975 * 7 6 2 35 35 H 1.08998 * 109.57479 * 316.91710 * 7 6 2 36 36 H 1.09001 * 109.58558 * 113.82426 * 13 12 10 37 37 H 1.09000 * 109.58299 * 353.39950 * 13 12 10 38 38 H 1.08999 * 109.50128 * 185.41289 * 14 13 12 39 39 H 1.09008 * 109.49953 * 65.31454 * 14 13 12 40 40 H 1.08998 * 109.45635 * 301.34782 * 15 14 13 41 41 H 1.08994 * 109.46549 * 181.38435 * 15 14 13 42 42 H 1.08996 * 109.47213 * 54.85618 * 18 16 15 43 43 H 1.09003 * 109.46893 * 174.85757 * 18 16 15 44 44 H 0.97004 * 119.99978 * 359.97438 * 19 18 16 45 45 H 0.97001 * 119.99961 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.58671 * 6.59828 * 28 12 10 47 47 H 1.09001 * 109.58535 * 246.17742 * 28 12 10 48 48 H 1.09004 * 109.49589 * 189.39827 * 29 8 7 49 49 H 1.08997 * 109.50308 * 309.49463 * 29 8 7 50 50 H 1.09003 * 109.73327 * 76.20143 * 30 5 4 51 51 H 1.08999 * 109.72982 * 315.52086 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6813 -0.0005 5 6 3.5816 -0.6156 -0.0016 6 7 2.3076 -1.0833 0.0005 7 6 1.9369 -2.4980 0.0038 8 6 3.1551 -3.3251 0.4312 9 1 3.3618 -3.1482 1.4867 10 6 2.8691 -4.7887 0.2143 11 8 2.1907 -5.1410 -0.7273 12 7 3.3671 -5.7062 1.0668 13 6 4.2862 -5.3082 2.1418 14 6 5.5537 -6.1634 2.0486 15 6 5.1677 -7.6442 2.0678 16 6 4.2832 -7.9583 0.8590 17 1 4.8199 -7.7142 -0.0577 18 6 3.9248 -9.4458 0.8603 19 7 5.1396 -10.2409 0.6643 20 6 5.0648 -11.6078 0.6293 21 1 4.1106 -12.0996 0.7467 22 6 6.2158 -12.3612 0.4430 23 7 7.3787 -11.7617 0.2994 24 14 6.1141 -14.2258 0.3961 25 1 5.2264 -14.6451 -0.7182 26 1 7.4714 -14.7904 0.1863 27 1 5.5634 -14.7240 1.6820 28 6 3.0013 -7.1234 0.9387 29 6 4.3720 -2.9142 -0.4027 30 6 4.8052 -1.4970 -0.0044 31 1 -0.3634 0.0005 -1.0276 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3633 0.8897 0.5143 34 1 1.6251 -2.7968 -0.9970 35 1 1.1201 -2.6598 0.7071 36 1 3.8083 -5.4671 3.1085 37 1 4.5463 -4.2557 2.0290 38 1 6.2027 -5.9456 2.8968 39 1 6.0785 -5.9362 1.1206 40 1 4.6214 -7.8652 2.9848 41 1 6.0694 -8.2551 2.0265 42 1 3.4686 -9.7087 1.8147 43 1 3.2220 -9.6509 0.0528 44 1 5.9966 -9.7991 0.5585 45 1 8.1830 -12.2882 0.1696 46 1 2.4137 -7.2687 0.0322 47 1 2.4187 -7.4304 1.8073 48 1 5.1907 -3.6101 -0.2190 49 1 4.1105 -2.9306 -1.4607 50 1 5.2486 -1.5143 0.9912 51 1 5.5304 -1.1176 -0.7242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566913562.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:55 Heat of formation + Delta-G solvation = 44.242122 kcal Electronic energy + Delta-G solvation = -31011.671529 eV Core-core repulsion = 26947.035982 eV Total energy + Delta-G solvation = -4064.635547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.66889 -40.79223 -38.25083 -37.00932 -35.13765 -34.51889 -32.98449 -32.02000 -31.77903 -30.94635 -29.92942 -27.74954 -26.30889 -25.70783 -24.73994 -23.54648 -22.81959 -22.06946 -21.67033 -20.49103 -19.90710 -18.95405 -17.96136 -17.22620 -17.03931 -16.73706 -16.17587 -15.44626 -15.35853 -14.89017 -14.70318 -14.62049 -14.37422 -14.31551 -14.23815 -13.94063 -13.70760 -13.51710 -13.20589 -13.07665 -13.06056 -12.79834 -12.64280 -12.45958 -12.21403 -11.97900 -11.86302 -11.65368 -11.55799 -11.17201 -10.97406 -10.85746 -10.76700 -10.63878 -10.50681 -10.42304 -10.29978 -10.14910 -9.94672 -9.73777 -9.29694 -8.92464 -8.81417 -6.96889 -5.81028 -3.09646 1.45702 1.94485 2.22423 2.54217 2.67530 3.41096 3.45688 3.46520 3.64692 3.78710 3.83203 4.01638 4.08643 4.33707 4.47815 4.54428 4.55232 4.62653 4.66549 4.78880 4.83180 4.89630 4.97966 5.03283 5.05684 5.14797 5.18120 5.25762 5.28203 5.32305 5.44958 5.44999 5.51753 5.53178 5.61194 5.68925 5.74318 5.83861 5.84968 5.94752 6.07321 6.11366 6.33298 6.36723 6.48492 6.56724 6.70836 6.80166 7.10284 7.65570 7.79660 8.37954 8.42857 9.49201 10.06273 10.40899 11.41773 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027775 B = 0.001958 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.859791 B =14296.522742 C =14717.847480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.178 3.822 3 N -0.300 5.300 4 N -0.290 5.290 5 C 0.174 3.826 6 N -0.468 5.468 7 C 0.120 3.880 8 C -0.124 4.124 9 H 0.106 0.894 10 C 0.525 3.475 11 O -0.535 6.535 12 N -0.602 5.602 13 C 0.102 3.898 14 C -0.135 4.135 15 C -0.112 4.112 16 C -0.106 4.106 17 H 0.074 0.926 18 C 0.160 3.840 19 N -0.730 5.730 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.118 3.882 29 C -0.116 4.116 30 C -0.031 4.031 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.093 0.907 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.099 0.901 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.187 22.374 3.948 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.141 5.141 4 N -0.129 5.129 5 C -0.094 4.094 6 N -0.160 5.160 7 C -0.003 4.003 8 C -0.146 4.146 9 H 0.124 0.876 10 C 0.311 3.689 11 O -0.412 6.412 12 N -0.334 5.334 13 C -0.021 4.021 14 C -0.173 4.173 15 C -0.150 4.150 16 C -0.126 4.126 17 H 0.093 0.907 18 C 0.032 3.968 19 N -0.375 5.375 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.004 4.004 29 C -0.155 4.155 30 C -0.070 4.070 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.112 0.888 47 H 0.089 0.911 48 H 0.113 0.887 49 H 0.102 0.898 50 H 0.117 0.883 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.206 23.452 3.457 25.809 hybrid contribution -0.056 -2.349 0.042 2.350 sum -10.262 21.104 3.499 23.726 Atomic orbital electron populations 1.20228 0.83639 1.04541 1.04224 1.24688 0.97127 0.82697 1.04351 1.74495 0.96121 1.23636 1.19805 1.74055 1.12284 1.08004 1.18567 1.24716 0.87019 0.92577 1.05046 1.45959 1.07055 1.08309 1.54655 1.21829 0.97426 0.75677 1.05382 1.21670 0.96549 0.93080 1.03280 0.87554 1.19963 0.79900 0.86863 0.82153 1.90739 1.39558 1.81385 1.29541 1.48111 1.46220 1.08282 1.30765 1.21911 0.90686 0.99195 0.90287 1.21949 0.96204 0.96354 1.02802 1.21543 1.01100 0.94533 0.97828 1.21668 0.95369 0.96281 0.99253 0.90730 1.20582 0.90915 0.87563 0.97785 1.42323 1.04292 1.03133 1.87717 1.19181 0.93551 0.82646 1.41770 0.91239 1.24739 0.95419 0.97995 1.02823 1.69643 0.97744 1.34373 1.56506 0.86256 0.76510 0.85513 0.77835 1.21263 1.21681 1.21271 1.21723 0.97418 0.78004 1.03276 1.21685 0.96708 0.96314 1.00758 1.20230 0.91238 0.90811 1.04727 0.89437 0.90404 0.88595 0.87387 0.88290 0.90967 0.90004 0.90575 0.91390 0.91995 0.90066 0.96185 0.96202 0.78225 0.93455 0.88819 0.91132 0.88709 0.89803 0.88315 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.29 36.01 0.37 0.00 16 2 C 0.18 1.75 8.07 -155.44 -1.25 0.50 16 3 N -0.30 -3.94 12.23 32.70 0.40 -3.54 16 4 N -0.29 -3.83 12.21 32.76 0.40 -3.43 16 5 C 0.17 1.74 7.75 -155.30 -1.20 0.54 16 6 N -0.47 -4.19 3.11 -110.86 -0.35 -4.53 16 7 C 0.12 0.85 5.87 -4.01 -0.02 0.83 16 8 C -0.12 -0.85 1.73 -91.53 -0.16 -1.01 16 9 H 0.11 0.56 6.17 -51.93 -0.32 0.24 16 10 C 0.53 5.30 6.67 -10.99 -0.07 5.23 16 11 O -0.54 -7.37 15.50 5.55 0.09 -7.28 16 12 N -0.60 -5.95 2.97 -172.77 -0.51 -6.47 16 13 C 0.10 0.75 6.15 -3.71 -0.02 0.73 16 14 C -0.13 -1.25 6.08 -26.61 -0.16 -1.41 16 15 C -0.11 -1.47 5.06 -26.69 -0.13 -1.60 16 16 C -0.11 -1.55 2.37 -90.50 -0.21 -1.76 16 17 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 18 C 0.16 3.02 5.65 -4.04 -0.02 3.00 16 19 N -0.73 -17.76 5.32 -59.91 -0.32 -18.08 16 20 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 24 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.12 1.43 5.73 -3.71 -0.02 1.41 16 29 C -0.12 -0.74 5.14 -26.43 -0.14 -0.88 16 30 C -0.03 -0.19 6.33 -27.60 -0.17 -0.37 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.29 7.75 -51.93 -0.40 -0.12 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.11 0.86 7.53 -51.93 -0.39 0.47 16 35 H 0.10 0.54 7.84 -51.93 -0.41 0.14 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.41 5.54 -51.93 -0.29 0.12 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.31 7.16 -51.93 -0.37 0.94 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.38 9.76 6.86 -40.82 -0.28 9.48 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.09 0.54 8.12 -51.93 -0.42 0.11 16 49 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 50 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -35.40 399.58 -10.33 -45.73 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -8.29 Total: 3.48 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -3.48 Total: -2.03 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: 0.35 Total: -62.99 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.09 Total: -7.28 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.40 -10.33 -45.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566913562.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.974 kcal (2) G-P(sol) polarization free energy of solvation -35.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds