Wall clock time and date at job start Wed Apr 1 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30839 * 126.46396 * 2 1 4 4 N 1.28906 * 109.73988 * 180.02562 * 3 2 1 5 5 C 1.29840 * 109.48316 * 0.03234 * 4 3 2 6 6 N 1.34701 * 126.46776 * 179.97438 * 2 1 3 7 7 C 1.46249 * 128.84927 * 359.86508 * 6 2 1 8 8 C 1.53324 * 108.72782 * 197.15087 * 7 6 2 9 9 H 1.08999 * 109.45316 * 69.70075 * 8 7 6 10 10 C 1.50696 * 109.44879 * 189.65193 * 8 7 6 11 11 O 1.21285 * 120.00319 * 34.78748 * 10 8 7 12 12 N 1.34776 * 119.99816 * 214.78997 * 10 8 7 13 13 C 1.46927 * 120.63243 * 354.58454 * 12 10 8 14 14 C 1.53185 * 108.77795 * 233.61156 * 13 12 10 15 15 C 1.53043 * 109.31588 * 305.36314 * 14 13 12 16 16 C 1.53046 * 109.53499 * 61.36371 * 15 14 13 17 17 H 1.08997 * 109.49691 * 58.59089 * 16 15 14 18 18 C 1.53003 * 109.52256 * 178.66922 * 16 15 14 19 19 N 1.46500 * 109.47180 * 294.85618 * 18 16 15 20 20 C 1.36935 * 119.99686 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00149 * 359.97438 * 20 19 18 22 22 C 1.38817 * 119.99580 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00112 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99925 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46895 * 59.99959 * 24 22 20 26 26 H 1.48497 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47239 * 300.00012 * 24 22 20 28 28 C 1.46929 * 120.63233 * 174.59109 * 12 10 8 29 29 C 1.53137 * 109.56173 * 309.67437 * 8 7 6 30 30 C 1.50796 * 128.52668 * 179.91120 * 5 4 3 31 31 H 1.08997 * 109.47403 * 89.97408 * 1 2 3 32 32 H 1.09002 * 109.46856 * 209.96854 * 1 2 3 33 33 H 1.08993 * 109.47099 * 329.97067 * 1 2 3 34 34 H 1.09003 * 109.60778 * 77.36975 * 7 6 2 35 35 H 1.08998 * 109.57479 * 316.91710 * 7 6 2 36 36 H 1.09001 * 109.58558 * 113.82426 * 13 12 10 37 37 H 1.09000 * 109.58299 * 353.39950 * 13 12 10 38 38 H 1.08999 * 109.50128 * 185.41289 * 14 13 12 39 39 H 1.09008 * 109.49953 * 65.31454 * 14 13 12 40 40 H 1.08998 * 109.45635 * 301.34782 * 15 14 13 41 41 H 1.08994 * 109.46549 * 181.38435 * 15 14 13 42 42 H 1.08996 * 109.47213 * 54.85618 * 18 16 15 43 43 H 1.09003 * 109.46893 * 174.85757 * 18 16 15 44 44 H 0.97004 * 119.99978 * 359.97438 * 19 18 16 45 45 H 0.97001 * 119.99961 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.58671 * 6.59828 * 28 12 10 47 47 H 1.09001 * 109.58535 * 246.17742 * 28 12 10 48 48 H 1.09004 * 109.49589 * 189.39827 * 29 8 7 49 49 H 1.08997 * 109.50308 * 309.49463 * 29 8 7 50 50 H 1.09003 * 109.73327 * 76.20143 * 30 5 4 51 51 H 1.08999 * 109.72982 * 315.52086 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6813 -0.0005 5 6 3.5816 -0.6156 -0.0016 6 7 2.3076 -1.0833 0.0005 7 6 1.9369 -2.4980 0.0038 8 6 3.1551 -3.3251 0.4312 9 1 3.3618 -3.1482 1.4867 10 6 2.8691 -4.7887 0.2143 11 8 2.1907 -5.1410 -0.7273 12 7 3.3671 -5.7062 1.0668 13 6 4.2862 -5.3082 2.1418 14 6 5.5537 -6.1634 2.0486 15 6 5.1677 -7.6442 2.0678 16 6 4.2832 -7.9583 0.8590 17 1 4.8199 -7.7142 -0.0577 18 6 3.9248 -9.4458 0.8603 19 7 5.1396 -10.2409 0.6643 20 6 5.0648 -11.6078 0.6293 21 1 4.1106 -12.0996 0.7467 22 6 6.2158 -12.3612 0.4430 23 7 7.3787 -11.7617 0.2994 24 14 6.1141 -14.2258 0.3961 25 1 5.2264 -14.6451 -0.7182 26 1 7.4714 -14.7904 0.1863 27 1 5.5634 -14.7240 1.6820 28 6 3.0013 -7.1234 0.9387 29 6 4.3720 -2.9142 -0.4027 30 6 4.8052 -1.4970 -0.0044 31 1 -0.3634 0.0005 -1.0276 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3633 0.8897 0.5143 34 1 1.6251 -2.7968 -0.9970 35 1 1.1201 -2.6598 0.7071 36 1 3.8083 -5.4671 3.1085 37 1 4.5463 -4.2557 2.0290 38 1 6.2027 -5.9456 2.8968 39 1 6.0785 -5.9362 1.1206 40 1 4.6214 -7.8652 2.9848 41 1 6.0694 -8.2551 2.0265 42 1 3.4686 -9.7087 1.8147 43 1 3.2220 -9.6509 0.0528 44 1 5.9966 -9.7991 0.5585 45 1 8.1830 -12.2882 0.1696 46 1 2.4137 -7.2687 0.0322 47 1 2.4187 -7.4304 1.8073 48 1 5.1907 -3.6101 -0.2190 49 1 4.1105 -2.9306 -1.4607 50 1 5.2486 -1.5143 0.9912 51 1 5.5304 -1.1176 -0.7242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566913562.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:54 Heat of formation + Delta-G solvation = 22.355035 kcal Electronic energy + Delta-G solvation = -31012.620624 eV Core-core repulsion = 26947.035982 eV Total energy + Delta-G solvation = -4065.584642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.38439 -41.60199 -39.20229 -37.76692 -36.63784 -35.18629 -34.42550 -32.96080 -32.70118 -31.75743 -31.25624 -28.36544 -27.48468 -26.81259 -25.64871 -24.63014 -23.94755 -23.11276 -22.39046 -21.46205 -20.82106 -19.68067 -19.21490 -18.64327 -17.72626 -17.50703 -17.05411 -16.58019 -16.19947 -16.02862 -15.76766 -15.55333 -15.34828 -15.16155 -15.11250 -14.95818 -14.79780 -14.57231 -14.08630 -13.96118 -13.80277 -13.59075 -13.45896 -13.38775 -13.17784 -13.08100 -12.75772 -12.72591 -12.60568 -12.26716 -12.19704 -12.12853 -12.04161 -11.93287 -11.71047 -11.57362 -11.38254 -11.36644 -11.11567 -10.91851 -10.81918 -10.03483 -9.69132 -8.99864 -7.95993 -5.24337 0.78530 1.27272 1.46333 1.47717 1.49547 1.55679 1.76887 1.92389 2.55673 3.06835 3.16518 3.25551 3.37393 3.49196 3.53742 3.71743 3.78551 3.88251 3.90682 3.97458 4.06840 4.09128 4.18527 4.29020 4.31954 4.41804 4.44852 4.48617 4.58933 4.63489 4.64960 4.71297 4.78542 4.80038 4.83241 4.85500 4.88827 4.95610 4.97515 5.00203 5.03197 5.20638 5.23095 5.26287 5.42778 5.44948 5.49623 5.53154 5.86588 6.26256 6.33902 7.01664 7.32998 7.67007 8.08994 8.32348 9.27193 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027775 B = 0.001958 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.859791 B =14296.522742 C =14717.847480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.181 3.819 3 N -0.347 5.347 4 N -0.335 5.335 5 C 0.175 3.825 6 N -0.468 5.468 7 C 0.121 3.879 8 C -0.113 4.113 9 H 0.134 0.866 10 C 0.527 3.473 11 O -0.577 6.577 12 N -0.601 5.601 13 C 0.102 3.898 14 C -0.129 4.129 15 C -0.109 4.109 16 C -0.093 4.093 17 H 0.052 0.948 18 C 0.157 3.843 19 N -0.742 5.742 20 C -0.247 4.247 21 H 0.074 0.926 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.973 3.027 25 H -0.280 1.280 26 H -0.295 1.295 27 H -0.276 1.276 28 C 0.127 3.873 29 C -0.111 4.111 30 C -0.025 4.025 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.028 0.972 43 H 0.012 0.988 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.108 0.892 49 H 0.067 0.933 50 H 0.125 0.875 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.097 22.901 5.645 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 N -0.187 5.187 4 N -0.173 5.173 5 C -0.094 4.094 6 N -0.159 5.159 7 C -0.002 4.002 8 C -0.134 4.134 9 H 0.152 0.848 10 C 0.315 3.685 11 O -0.456 6.456 12 N -0.332 5.332 13 C -0.020 4.020 14 C -0.167 4.167 15 C -0.147 4.147 16 C -0.113 4.113 17 H 0.070 0.930 18 C 0.030 3.970 19 N -0.385 5.385 20 C -0.379 4.379 21 H 0.092 0.908 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.802 3.198 25 H -0.207 1.207 26 H -0.221 1.221 27 H -0.202 1.202 28 C 0.004 3.996 29 C -0.150 4.150 30 C -0.064 4.064 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.030 0.970 44 H 0.207 0.793 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.126 0.874 49 H 0.086 0.914 50 H 0.143 0.857 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.145 24.008 5.178 26.970 hybrid contribution 0.167 -2.528 -0.516 2.586 sum -10.978 21.480 4.662 24.569 Atomic orbital electron populations 1.20435 0.80913 1.05955 1.05285 1.25392 0.98596 0.82264 1.02500 1.74396 0.96697 1.25539 1.22066 1.73949 1.12816 1.09898 1.20683 1.25331 0.88397 0.92220 1.03448 1.46068 1.06686 1.08772 1.54365 1.21914 0.98212 0.74579 1.05485 1.21632 0.96544 0.90313 1.04939 0.84777 1.20444 0.78928 0.88008 0.81162 1.90732 1.41425 1.82213 1.31257 1.48159 1.46535 1.07095 1.31375 1.22151 0.89094 1.00533 0.90185 1.21907 0.97651 0.93555 1.03540 1.21471 0.99065 0.97027 0.97114 1.21473 0.96874 0.93750 0.99167 0.92954 1.20746 0.88852 0.89947 0.97471 1.42519 1.05596 1.02755 1.87608 1.19594 0.93674 0.84245 1.40363 0.90792 1.25554 0.95234 1.02426 1.03527 1.69799 0.98194 1.35711 1.58166 0.85221 0.76170 0.80278 0.78150 1.20653 1.22122 1.20229 1.21439 0.95617 0.79376 1.03157 1.21655 0.96902 0.96647 0.99776 1.20395 0.89919 0.89693 1.06421 0.88440 0.88136 0.88005 0.88516 0.86163 0.88989 0.86580 0.88347 0.92022 0.91209 0.93808 0.95427 0.96965 0.79293 0.93992 0.90717 0.89492 0.87359 0.91435 0.85731 0.86866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.29 71.24 0.73 0.13 16 2 C 0.18 3.33 8.07 138.14 1.11 4.45 16 3 N -0.35 -9.10 12.23 -50.46 -0.62 -9.71 16 4 N -0.33 -8.77 12.21 -50.28 -0.61 -9.38 16 5 C 0.17 3.23 7.75 138.14 1.07 4.30 16 6 N -0.47 -7.50 3.11 -504.66 -1.57 -9.08 16 7 C 0.12 1.41 5.87 86.54 0.51 1.91 16 8 C -0.11 -1.18 1.73 -11.39 -0.02 -1.20 16 9 H 0.13 0.70 6.17 -2.39 -0.01 0.69 16 10 C 0.53 9.39 6.67 87.66 0.58 9.97 16 11 O -0.58 -15.34 15.50 -3.05 -0.05 -15.39 16 12 N -0.60 -10.23 2.97 -818.91 -2.43 -12.66 16 13 C 0.10 1.06 6.15 86.36 0.53 1.59 16 14 C -0.13 -2.01 6.08 30.67 0.19 -1.82 16 15 C -0.11 -2.74 5.06 30.62 0.15 -2.58 16 16 C -0.09 -2.69 2.37 -10.71 -0.03 -2.72 16 17 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 18 C 0.16 5.99 5.65 86.38 0.49 6.47 16 19 N -0.74 -36.88 5.32 -343.45 -1.83 -38.71 16 20 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 21 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 22 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 23 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 24 Si 0.97 45.67 29.55 68.60 2.03 47.69 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 28 C 0.13 2.92 5.73 86.36 0.49 3.42 16 29 C -0.11 -1.12 5.14 30.79 0.16 -0.96 16 30 C -0.03 -0.25 6.33 30.03 0.19 -0.06 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.44 7.75 -2.39 -0.02 0.42 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 1.40 7.53 -2.39 -0.02 1.39 16 35 H 0.12 0.90 7.84 -2.39 -0.02 0.89 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.12 0.48 5.54 -2.39 -0.01 0.46 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.04 1.43 7.16 -2.39 -0.02 1.42 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.37 19.74 6.86 -92.71 -0.64 19.11 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 46 H 0.07 2.03 7.00 -2.39 -0.02 2.01 16 47 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.11 0.85 8.12 -2.39 -0.02 0.83 16 49 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 50 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -80.59 399.58 2.98 -77.61 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.30 Total: 21.56 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 7.47 Total: 6.26 kcal Atomic # 7 Polarization: -130.95 SS G_CDS: -6.78 Total: -137.73 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.05 Total: -15.39 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -80.59 2.98 -77.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566913562.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.967 kcal (2) G-P(sol) polarization free energy of solvation -80.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds