Wall clock time and date at job start Wed Apr 1 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30840 * 126.46269 * 2 1 4 4 N 1.28909 * 109.73885 * 179.97438 * 3 2 1 5 5 C 1.29831 * 109.47834 * 359.96333 * 4 3 2 6 6 N 1.34491 * 126.40108 * 179.88518 * 2 1 3 7 7 C 1.46267 * 129.00858 * 0.41127 * 6 2 1 8 8 C 1.53310 * 108.85151 * 162.69559 * 7 6 2 9 9 H 1.09001 * 109.45741 * 290.21177 * 8 7 6 10 10 C 1.50706 * 109.45435 * 170.25496 * 8 7 6 11 11 O 1.21281 * 119.99607 * 334.87597 * 10 8 7 12 12 N 1.34775 * 120.00044 * 154.86893 * 10 8 7 13 13 C 1.46920 * 120.63422 * 5.01008 * 12 10 8 14 14 C 1.53190 * 108.78062 * 233.58435 * 13 12 10 15 15 C 1.53043 * 109.31041 * 305.36846 * 14 13 12 16 16 C 1.53037 * 109.53820 * 61.36209 * 15 14 13 17 17 H 1.08999 * 109.49846 * 58.62018 * 16 15 14 18 18 C 1.52998 * 109.49523 * 178.68392 * 16 15 14 19 19 N 1.46498 * 109.47125 * 294.99940 * 18 16 15 20 20 C 1.36943 * 120.00136 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99979 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99977 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99732 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00106 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.46910 * 89.99930 * 24 22 20 26 26 H 1.48498 * 109.47012 * 209.99850 * 24 22 20 27 27 H 1.48492 * 109.47036 * 330.00169 * 24 22 20 28 28 C 1.46930 * 120.62790 * 184.72791 * 12 10 8 29 29 C 1.53146 * 109.58670 * 50.22242 * 8 7 6 30 30 C 1.50806 * 128.52353 * 180.11327 * 5 4 3 31 31 H 1.09004 * 109.46872 * 89.97569 * 1 2 3 32 32 H 1.09000 * 109.47009 * 209.97362 * 1 2 3 33 33 H 1.08999 * 109.47295 * 329.97981 * 1 2 3 34 34 H 1.08998 * 109.59189 * 42.84712 * 7 6 2 35 35 H 1.08994 * 109.59427 * 282.54633 * 7 6 2 36 36 H 1.09007 * 109.58686 * 353.37282 * 13 12 10 37 37 H 1.09007 * 109.58748 * 113.79534 * 13 12 10 38 38 H 1.09002 * 109.49467 * 65.31800 * 14 13 12 39 39 H 1.08992 * 109.50134 * 185.41074 * 14 13 12 40 40 H 1.08996 * 109.45554 * 181.38137 * 15 14 13 41 41 H 1.08995 * 109.45352 * 301.33711 * 15 14 13 42 42 H 1.08999 * 109.47302 * 55.00129 * 18 16 15 43 43 H 1.09001 * 109.47382 * 174.99466 * 18 16 15 44 44 H 0.97000 * 120.00150 * 359.97438 * 19 18 16 45 45 H 0.96997 * 120.00157 * 180.02562 * 23 22 20 46 46 H 1.08988 * 109.58706 * 246.20264 * 28 12 10 47 47 H 1.08995 * 109.58621 * 6.63230 * 28 12 10 48 48 H 1.08995 * 109.49687 * 50.51585 * 29 8 7 49 49 H 1.08993 * 109.50335 * 170.61921 * 29 8 7 50 50 H 1.08999 * 109.72974 * 44.43499 * 30 5 4 51 51 H 1.08999 * 109.72824 * 283.75334 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5192 0.6813 0.0005 5 6 3.5816 -0.6155 0.0017 6 7 2.3051 -1.0825 0.0022 7 6 1.9367 -2.4980 -0.0032 8 6 3.1549 -3.3254 -0.4295 9 1 3.3620 -3.1493 -1.4851 10 6 2.8689 -4.7889 -0.2115 11 8 2.0534 -5.1302 0.6187 12 7 3.5194 -5.7183 -0.9392 13 6 4.5871 -5.3280 -1.8700 14 6 4.2707 -5.9049 -3.2534 15 6 4.0610 -7.4163 -3.1355 16 6 2.8738 -7.6978 -2.2117 17 1 1.9804 -7.2176 -2.6107 18 6 2.6446 -9.2078 -2.1205 19 7 2.2442 -9.7210 -3.4330 20 6 1.9826 -11.0553 -3.5957 21 1 2.0719 -11.7294 -2.7567 22 6 1.6027 -11.5415 -4.8392 23 7 1.3518 -12.8241 -4.9957 24 14 1.4489 -10.3758 -6.2907 25 1 2.7520 -10.2914 -6.9980 26 1 0.4108 -10.8818 -7.2242 27 1 1.0619 -9.0274 -5.8038 28 6 3.1783 -7.1418 -0.8123 29 6 4.3721 -2.9140 0.4039 30 6 4.8052 -1.4970 0.0050 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3633 -0.8902 0.5134 33 1 -0.3634 0.8898 0.5141 34 1 1.1201 -2.6605 -0.7066 35 1 1.6230 -2.7978 0.9967 36 1 4.6395 -4.2409 -1.9307 37 1 5.5405 -5.7228 -1.5187 38 1 3.3642 -5.4411 -3.6423 39 1 5.1014 -5.7045 -3.9298 40 1 3.8599 -7.8330 -4.1224 41 1 4.9590 -7.8764 -2.7234 42 1 3.5661 -9.6968 -1.8049 43 1 1.8576 -9.4127 -1.3947 44 1 2.1636 -9.1156 -4.1865 45 1 1.0867 -13.1639 -5.8647 46 1 4.0191 -7.6815 -0.3766 47 1 2.3010 -7.2519 -0.1750 48 1 4.1107 -2.9296 1.4619 49 1 5.1907 -3.6099 0.2206 50 1 5.5304 -1.1171 0.7246 51 1 5.2484 -1.5149 -0.9906 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566913564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:03 Heat of formation + Delta-G solvation = 24.721146 kcal Electronic energy + Delta-G solvation = -31143.375131 eV Core-core repulsion = 27077.893092 eV Total energy + Delta-G solvation = -4065.482040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.39167 -41.61246 -39.23679 -37.77974 -36.78039 -35.21307 -34.43808 -33.11874 -32.73324 -31.98136 -31.36868 -28.37729 -27.66482 -26.86444 -25.56511 -24.38338 -23.92831 -23.11372 -22.40914 -21.57305 -20.73366 -19.83367 -19.67362 -18.67252 -17.70155 -17.46206 -17.03876 -16.62058 -16.29543 -16.01121 -15.86690 -15.58539 -15.38406 -15.20426 -15.03552 -14.92432 -14.84797 -14.66771 -14.07297 -13.97356 -13.86016 -13.74277 -13.59618 -13.50737 -13.24697 -13.09725 -12.85132 -12.72018 -12.61922 -12.29692 -12.22751 -12.14849 -12.00910 -11.90208 -11.77738 -11.59528 -11.39345 -11.38342 -11.13259 -10.97889 -10.82469 -10.04150 -9.70239 -9.30896 -8.04319 -5.38041 0.77525 1.26034 1.34818 1.39393 1.46756 1.50120 1.75910 1.90721 2.46491 3.05081 3.16177 3.25555 3.26874 3.49598 3.51888 3.57175 3.70784 3.84524 3.88183 3.98641 4.01416 4.04699 4.21985 4.22790 4.30138 4.31040 4.42679 4.50595 4.57405 4.59309 4.65046 4.67799 4.78967 4.80648 4.81896 4.85381 4.88841 4.94537 4.96990 4.99043 5.04816 5.17627 5.21445 5.22168 5.34491 5.44497 5.50155 5.74085 5.85514 6.19558 6.33157 7.01247 7.06288 7.65965 7.82088 8.01427 9.17293 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.002196 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.000695 B =12748.343640 C =13061.208103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.180 3.820 3 N -0.347 5.347 4 N -0.335 5.335 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.120 3.880 8 C -0.113 4.113 9 H 0.130 0.870 10 C 0.527 3.473 11 O -0.577 6.577 12 N -0.600 5.600 13 C 0.099 3.901 14 C -0.131 4.131 15 C -0.115 4.115 16 C -0.097 4.097 17 H 0.061 0.939 18 C 0.159 3.841 19 N -0.755 5.755 20 C -0.235 4.235 21 H 0.055 0.945 22 C -0.066 4.066 23 N -0.984 5.984 24 Si 0.957 3.043 25 H -0.273 1.273 26 H -0.297 1.297 27 H -0.253 1.253 28 C 0.127 3.873 29 C -0.109 4.109 30 C -0.026 4.026 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.017 0.983 44 H 0.366 0.634 45 H 0.258 0.742 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.466 26.626 9.214 29.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 N -0.187 5.187 4 N -0.173 5.173 5 C -0.095 4.095 6 N -0.160 5.160 7 C -0.003 4.003 8 C -0.135 4.135 9 H 0.148 0.852 10 C 0.315 3.685 11 O -0.457 6.457 12 N -0.331 5.331 13 C -0.022 4.022 14 C -0.169 4.169 15 C -0.153 4.153 16 C -0.116 4.116 17 H 0.080 0.920 18 C 0.033 3.967 19 N -0.401 5.401 20 C -0.366 4.366 21 H 0.073 0.927 22 C -0.257 4.257 23 N -0.635 5.635 24 Si 0.784 3.216 25 H -0.199 1.199 26 H -0.224 1.224 27 H -0.178 1.178 28 C 0.004 3.996 29 C -0.147 4.147 30 C -0.065 4.065 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.134 0.866 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.035 0.965 44 H 0.200 0.800 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.442 27.690 9.737 30.542 hybrid contribution -1.123 -1.533 -0.965 2.131 sum 7.319 26.158 8.772 28.543 Atomic orbital electron populations 1.20421 0.81248 1.05684 1.05373 1.25277 0.98534 0.82426 1.02597 1.74406 0.96753 1.25447 1.22105 1.73932 1.12715 1.10010 1.20653 1.25511 0.88399 0.92244 1.03337 1.46078 1.06824 1.08686 1.54365 1.21868 0.98361 0.74645 1.05399 1.21611 0.96705 0.90370 1.04805 0.85222 1.20415 0.79984 0.87894 0.80219 1.90734 1.36510 1.82697 1.35743 1.48126 1.37066 1.06376 1.41555 1.22202 0.89905 1.02208 0.87864 1.21939 1.03223 0.94249 0.97524 1.21554 0.97489 0.97218 0.98998 1.21618 0.99321 0.94215 0.96476 0.92013 1.20728 0.97069 0.92542 0.86402 1.42668 1.83931 1.04990 1.08497 1.19037 1.37200 0.84853 0.95557 0.92722 1.25551 1.02059 0.97459 1.00676 1.69890 1.55026 1.14240 1.24317 0.85381 0.77750 0.79224 0.79253 1.19874 1.22421 1.17779 1.21506 1.01988 0.80387 0.95731 1.21704 0.96650 0.96645 0.99749 1.20448 0.89691 0.89844 1.06527 0.88076 0.88713 0.88154 0.87234 0.88302 0.86610 0.88588 0.92020 0.88191 0.93257 0.90806 0.94994 0.96498 0.80017 0.93317 0.89685 0.90708 0.91041 0.86249 0.86436 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.29 71.24 0.73 0.02 16 2 C 0.18 3.40 8.06 138.20 1.11 4.51 16 3 N -0.35 -9.06 12.23 -50.57 -0.62 -9.68 16 4 N -0.33 -8.46 12.21 -50.16 -0.61 -9.07 16 5 C 0.17 2.98 7.75 138.08 1.07 4.05 16 6 N -0.47 -7.44 3.11 -504.65 -1.57 -9.01 16 7 C 0.12 1.43 5.75 86.53 0.50 1.93 16 8 C -0.11 -1.03 1.68 -11.39 -0.02 -1.04 16 9 H 0.13 0.66 6.46 -2.39 -0.02 0.65 16 10 C 0.53 8.44 6.78 87.66 0.59 9.04 16 11 O -0.58 -14.31 15.33 -3.03 -0.05 -14.36 16 12 N -0.60 -8.82 2.97 -818.07 -2.43 -11.24 16 13 C 0.10 0.76 5.81 86.36 0.50 1.26 16 14 C -0.13 -1.58 6.08 30.67 0.19 -1.39 16 15 C -0.11 -2.38 5.05 30.62 0.15 -2.23 16 16 C -0.10 -2.43 2.39 -10.57 -0.03 -2.46 16 17 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 18 C 0.16 5.64 5.65 86.38 0.49 6.13 16 19 N -0.75 -33.99 5.12 -343.45 -1.76 -35.75 16 20 C -0.24 -13.29 10.47 84.03 0.88 -12.41 16 21 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 22 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 23 N -0.98 -62.73 13.97 21.65 0.30 -62.42 16 24 Si 0.96 44.38 27.74 68.60 1.90 46.28 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 26 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 27 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 28 C 0.13 2.63 5.73 86.51 0.50 3.12 16 29 C -0.11 -0.64 4.98 30.79 0.15 -0.49 16 30 C -0.03 -0.18 6.33 30.03 0.19 0.01 16 31 H 0.10 0.77 8.14 -2.38 -0.02 0.76 16 32 H 0.09 0.68 8.04 -2.39 -0.02 0.66 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.40 7.51 -2.39 -0.02 1.38 16 36 H 0.12 0.18 5.20 -2.38 -0.01 0.17 16 37 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 1.27 7.15 -2.39 -0.02 1.25 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.37 15.59 4.71 -92.71 -0.44 15.16 16 45 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.07 1.88 7.03 -2.39 -0.02 1.86 16 48 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 49 H 0.12 0.16 7.48 -2.39 -0.02 0.14 16 50 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -84.09 395.64 3.10 -81.00 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.44 Total: 17.59 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 7.48 Total: 6.67 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -6.69 Total: -137.18 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.05 Total: -14.36 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.90 Total: 46.28 kcal Total: -84.09 3.10 -81.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566913564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.719 kcal (2) G-P(sol) polarization free energy of solvation -84.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds