Wall clock time and date at job start Wed Apr 1 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30835 * 126.46101 * 2 1 4 4 N 1.28913 * 109.74098 * 179.97438 * 3 2 1 5 5 C 1.29837 * 109.47421 * 359.97021 * 4 3 2 6 6 N 1.34685 * 126.46680 * 179.97438 * 2 1 3 7 7 C 1.46265 * 128.84777 * 0.15458 * 6 2 1 8 8 C 1.53323 * 108.72866 * 162.90948 * 7 6 2 9 9 H 1.08999 * 109.45071 * 290.28670 * 8 7 6 10 10 C 1.50702 * 109.45468 * 170.32890 * 8 7 6 11 11 O 1.21281 * 119.99861 * 335.32336 * 10 8 7 12 12 N 1.34774 * 119.99772 * 155.32451 * 10 8 7 13 13 C 1.46921 * 120.63232 * 355.32325 * 12 10 8 14 14 C 1.53196 * 108.76333 * 126.36509 * 13 12 10 15 15 C 1.53039 * 109.31266 * 54.65651 * 14 13 12 16 16 C 1.53042 * 109.52710 * 298.61666 * 15 14 13 17 17 H 1.09000 * 109.49588 * 301.41616 * 16 15 14 18 18 C 1.53005 * 109.49911 * 181.35637 * 16 15 14 19 19 N 1.46499 * 109.46834 * 64.99895 * 18 16 15 20 20 C 1.36938 * 119.99550 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00553 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99956 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99897 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00135 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47125 * 89.99516 * 24 22 20 26 26 H 1.48495 * 109.47143 * 209.99928 * 24 22 20 27 27 H 1.48500 * 109.47046 * 329.99841 * 24 22 20 28 28 C 1.46929 * 120.62783 * 175.30967 * 12 10 8 29 29 C 1.53144 * 109.56171 * 50.30633 * 8 7 6 30 30 C 1.50802 * 128.52385 * 180.16020 * 5 4 3 31 31 H 1.09007 * 109.46819 * 269.99687 * 1 2 3 32 32 H 1.08989 * 109.47366 * 29.99922 * 1 2 3 33 33 H 1.09005 * 109.46986 * 150.00447 * 1 2 3 34 34 H 1.09000 * 109.59349 * 43.13578 * 7 6 2 35 35 H 1.08997 * 109.71649 * 282.75591 * 7 6 2 36 36 H 1.09003 * 109.59044 * 246.15967 * 13 12 10 37 37 H 1.08998 * 109.58959 * 6.58777 * 13 12 10 38 38 H 1.08999 * 109.51051 * 294.70069 * 14 13 12 39 39 H 1.09000 * 109.49025 * 174.60315 * 14 13 12 40 40 H 1.09002 * 109.46032 * 178.60253 * 15 14 13 41 41 H 1.08995 * 109.46251 * 58.62778 * 15 14 13 42 42 H 1.08998 * 109.47069 * 185.00038 * 18 16 15 43 43 H 1.08996 * 109.46803 * 304.99851 * 18 16 15 44 44 H 0.96997 * 120.00501 * 0.02562 * 19 18 16 45 45 H 0.97000 * 120.00011 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.58996 * 113.84165 * 28 12 10 47 47 H 1.09003 * 109.70049 * 353.47992 * 28 12 10 48 48 H 1.09000 * 109.49875 * 50.49712 * 29 8 7 49 49 H 1.09000 * 109.50209 * 170.59864 * 29 8 7 50 50 H 1.08999 * 109.73142 * 283.74573 * 30 5 4 51 51 H 1.09000 * 109.72667 * 44.37373 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5192 0.6814 0.0005 5 6 3.5816 -0.6155 0.0015 6 7 2.3076 -1.0831 0.0005 7 6 1.9368 -2.4980 -0.0020 8 6 3.1555 -3.3256 -0.4270 9 1 3.3633 -3.1498 -1.4824 10 6 2.8693 -4.7890 -0.2087 11 8 2.0472 -5.1298 0.6153 12 7 3.5271 -5.7190 -0.9290 13 6 4.4500 -5.3210 -2.0007 14 6 5.8072 -5.9877 -1.7550 15 6 5.6119 -7.4999 -1.6234 16 6 4.7048 -7.7963 -0.4269 17 1 5.1523 -7.3875 0.4790 18 6 4.5372 -9.3096 -0.2756 19 7 5.8296 -9.9128 0.0594 20 6 5.9260 -11.2663 0.2440 21 1 5.0494 -11.8890 0.1430 22 6 7.1505 -11.8379 0.5619 23 7 8.2188 -11.0790 0.6854 24 14 7.2820 -13.6840 0.8144 25 1 7.5926 -14.3400 -0.4811 26 1 8.3645 -13.9745 1.7885 27 1 5.9932 -14.2053 1.3366 28 6 3.3350 -7.1501 -0.6573 29 6 4.3715 -2.9136 0.4078 30 6 4.8052 -1.4970 0.0058 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3633 0.8899 -0.5138 33 1 -0.3633 -0.8901 -0.5138 34 1 1.1208 -2.6608 -0.7060 35 1 1.6222 -2.7974 0.9978 36 1 4.0531 -5.6436 -2.9633 37 1 4.5692 -4.2376 -1.9967 38 1 6.2442 -5.5961 -0.8364 39 1 6.4722 -5.7784 -2.5928 40 1 6.5792 -7.9793 -1.4732 41 1 5.1519 -7.8871 -2.5325 42 1 3.8218 -9.5182 0.5198 43 1 4.1718 -9.7301 -1.2124 44 1 6.6169 -9.3536 0.1504 45 1 9.0744 -11.4784 0.9072 46 1 2.8473 -7.6218 -1.5103 47 1 2.7176 -7.2756 0.2322 48 1 4.1086 -2.9286 1.4655 49 1 5.1904 -3.6096 0.2260 50 1 5.2492 -1.5149 -0.9895 51 1 5.5302 -1.1165 0.7253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566913565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:08 Heat of formation + Delta-G solvation = 43.985144 kcal Electronic energy + Delta-G solvation = -31082.110697 eV Core-core repulsion = 27017.464007 eV Total energy + Delta-G solvation = -4064.646690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.65657 -40.80313 -38.23720 -37.02297 -35.15325 -34.49724 -32.98134 -32.02115 -31.77048 -30.92517 -29.93291 -27.73257 -26.31513 -25.71263 -24.70786 -23.55585 -22.81821 -22.07145 -21.66267 -20.49149 -19.90823 -18.95058 -17.97408 -17.21028 -17.01709 -16.69609 -16.18169 -15.48266 -15.39896 -14.87980 -14.67151 -14.65167 -14.33665 -14.31431 -14.22949 -13.95755 -13.69362 -13.50265 -13.20468 -13.07830 -13.03711 -12.79709 -12.62135 -12.46040 -12.20570 -11.97598 -11.85768 -11.65947 -11.55633 -11.16545 -10.97876 -10.87442 -10.78514 -10.62708 -10.49946 -10.41403 -10.30366 -10.13067 -9.94601 -9.74386 -9.28514 -8.93469 -8.82043 -6.97402 -5.81756 -3.10318 1.47163 1.98072 2.20417 2.55450 2.68410 3.40096 3.45645 3.47161 3.64745 3.79272 3.85004 4.03014 4.10077 4.33309 4.48042 4.54380 4.55808 4.63489 4.68312 4.80176 4.82374 4.89675 4.99343 5.04910 5.05176 5.15867 5.18676 5.26858 5.29306 5.31878 5.45018 5.46119 5.51750 5.53076 5.62702 5.69109 5.74662 5.83008 5.86175 5.94069 6.06718 6.10645 6.32621 6.36310 6.49991 6.56191 6.70126 6.79266 7.10149 7.65640 7.79332 8.37255 8.44107 9.48638 10.05569 10.40167 11.41109 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025835 B = 0.001996 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.556827 B =14024.111420 C =14416.893376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.178 3.822 3 N -0.300 5.300 4 N -0.290 5.290 5 C 0.174 3.826 6 N -0.468 5.468 7 C 0.121 3.879 8 C -0.124 4.124 9 H 0.107 0.893 10 C 0.526 3.474 11 O -0.537 6.537 12 N -0.601 5.601 13 C 0.101 3.899 14 C -0.135 4.135 15 C -0.112 4.112 16 C -0.106 4.106 17 H 0.074 0.926 18 C 0.160 3.840 19 N -0.730 5.730 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.119 3.881 29 C -0.117 4.117 30 C -0.030 4.030 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.096 0.904 50 H 0.099 0.901 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.193 20.499 -6.378 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.141 5.141 4 N -0.129 5.129 5 C -0.094 4.094 6 N -0.160 5.160 7 C -0.003 4.003 8 C -0.146 4.146 9 H 0.125 0.875 10 C 0.312 3.688 11 O -0.414 6.414 12 N -0.333 5.333 13 C -0.021 4.021 14 C -0.174 4.174 15 C -0.150 4.150 16 C -0.126 4.126 17 H 0.092 0.908 18 C 0.032 3.968 19 N -0.375 5.375 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.003 4.003 29 C -0.155 4.155 30 C -0.070 4.070 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.111 0.889 48 H 0.101 0.899 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.275 21.577 -5.925 25.522 hybrid contribution 0.080 -2.283 0.078 2.286 sum -12.195 19.294 -5.847 23.562 Atomic orbital electron populations 1.20229 0.83649 1.04528 1.04218 1.24681 0.97127 0.82710 1.04356 1.74494 0.96125 1.23648 1.19823 1.74058 1.12277 1.08010 1.18563 1.24722 0.87027 0.92583 1.05061 1.45967 1.07041 1.08353 1.54624 1.21814 0.97427 0.75537 1.05479 1.21657 0.96548 0.93079 1.03280 0.87474 1.19960 0.81047 0.86837 0.80982 1.90733 1.33790 1.81970 1.34943 1.48086 1.43541 1.06961 1.34700 1.21929 0.90254 0.99782 0.90171 1.21960 0.95607 0.97182 1.02603 1.21543 1.01514 0.94020 0.97933 1.21675 0.94464 0.97381 0.99054 0.90757 1.20579 0.90137 0.88772 0.97357 1.42328 1.05061 1.05359 1.84724 1.19226 0.94254 0.83804 1.39782 0.91186 1.24740 0.95709 0.97904 1.02650 1.69653 0.99258 1.34015 1.55319 0.86183 0.77164 0.85308 0.77497 1.21723 1.21763 1.20759 1.21709 0.97996 0.78060 1.02584 1.21714 0.96747 0.96411 1.00662 1.20239 0.91229 0.90794 1.04730 0.89447 0.88613 0.90398 0.88278 0.87388 0.90895 0.89992 0.91380 0.90583 0.90055 0.91984 0.96193 0.96164 0.78226 0.93507 0.91169 0.88869 0.89876 0.88587 0.88296 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.29 36.01 0.37 0.00 16 2 C 0.18 1.77 8.07 -155.46 -1.25 0.52 16 3 N -0.30 -3.98 12.23 32.70 0.40 -3.58 16 4 N -0.29 -3.87 12.21 32.76 0.40 -3.47 16 5 C 0.17 1.76 7.75 -155.30 -1.20 0.55 16 6 N -0.47 -4.25 3.11 -110.86 -0.35 -4.59 16 7 C 0.12 0.87 5.76 -4.00 -0.02 0.85 16 8 C -0.12 -0.86 1.70 -91.53 -0.16 -1.01 16 9 H 0.11 0.57 6.26 -51.93 -0.33 0.24 16 10 C 0.53 5.30 6.79 -10.99 -0.07 5.22 16 11 O -0.54 -7.32 15.33 5.56 0.09 -7.24 16 12 N -0.60 -5.91 2.97 -172.77 -0.51 -6.43 16 13 C 0.10 0.74 6.27 -3.71 -0.02 0.72 16 14 C -0.14 -1.22 6.08 -26.61 -0.16 -1.38 16 15 C -0.11 -1.45 5.06 -26.69 -0.13 -1.58 16 16 C -0.11 -1.53 2.37 -90.50 -0.21 -1.74 16 17 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 18 C 0.16 3.00 5.66 -4.04 -0.02 2.98 16 19 N -0.73 -17.66 5.32 -59.91 -0.32 -17.98 16 20 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 24 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.12 1.44 5.70 -3.71 -0.02 1.42 16 29 C -0.12 -0.76 5.08 -26.39 -0.13 -0.89 16 30 C -0.03 -0.20 6.34 -27.57 -0.17 -0.37 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.46 8.14 -51.94 -0.42 0.04 16 33 H 0.08 0.30 7.76 -51.93 -0.40 -0.11 16 34 H 0.10 0.57 7.85 -51.93 -0.41 0.16 16 35 H 0.11 0.88 7.52 -51.93 -0.39 0.49 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.40 5.35 -51.93 -0.28 0.13 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.30 7.15 -51.93 -0.37 0.93 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.38 9.69 6.85 -40.82 -0.28 9.41 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 1.27 7.04 -51.93 -0.37 0.91 16 48 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 49 H 0.10 0.56 8.09 -51.93 -0.42 0.14 16 50 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 399.33 15.07 6.02 6.02 Total: -1.00 -35.25 399.33 -10.33 -45.57 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.28 Total: 3.43 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.47 Total: -1.92 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 0.35 Total: -62.90 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.09 Total: -7.24 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.25 -10.33 -45.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566913565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.559 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds