Wall clock time and date at job start Wed Apr 1 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30835 * 126.46101 * 2 1 4 4 N 1.28913 * 109.74098 * 179.97438 * 3 2 1 5 5 C 1.29837 * 109.47421 * 359.97021 * 4 3 2 6 6 N 1.34685 * 126.46680 * 179.97438 * 2 1 3 7 7 C 1.46265 * 128.84777 * 0.15458 * 6 2 1 8 8 C 1.53323 * 108.72866 * 162.90948 * 7 6 2 9 9 H 1.08999 * 109.45071 * 290.28670 * 8 7 6 10 10 C 1.50702 * 109.45468 * 170.32890 * 8 7 6 11 11 O 1.21281 * 119.99861 * 335.32336 * 10 8 7 12 12 N 1.34774 * 119.99772 * 155.32451 * 10 8 7 13 13 C 1.46921 * 120.63232 * 355.32325 * 12 10 8 14 14 C 1.53196 * 108.76333 * 126.36509 * 13 12 10 15 15 C 1.53039 * 109.31266 * 54.65651 * 14 13 12 16 16 C 1.53042 * 109.52710 * 298.61666 * 15 14 13 17 17 H 1.09000 * 109.49588 * 301.41616 * 16 15 14 18 18 C 1.53005 * 109.49911 * 181.35637 * 16 15 14 19 19 N 1.46499 * 109.46834 * 64.99895 * 18 16 15 20 20 C 1.36938 * 119.99550 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00553 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99956 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99897 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00135 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47125 * 89.99516 * 24 22 20 26 26 H 1.48495 * 109.47143 * 209.99928 * 24 22 20 27 27 H 1.48500 * 109.47046 * 329.99841 * 24 22 20 28 28 C 1.46929 * 120.62783 * 175.30967 * 12 10 8 29 29 C 1.53144 * 109.56171 * 50.30633 * 8 7 6 30 30 C 1.50802 * 128.52385 * 180.16020 * 5 4 3 31 31 H 1.09007 * 109.46819 * 269.99687 * 1 2 3 32 32 H 1.08989 * 109.47366 * 29.99922 * 1 2 3 33 33 H 1.09005 * 109.46986 * 150.00447 * 1 2 3 34 34 H 1.09000 * 109.59349 * 43.13578 * 7 6 2 35 35 H 1.08997 * 109.71649 * 282.75591 * 7 6 2 36 36 H 1.09003 * 109.59044 * 246.15967 * 13 12 10 37 37 H 1.08998 * 109.58959 * 6.58777 * 13 12 10 38 38 H 1.08999 * 109.51051 * 294.70069 * 14 13 12 39 39 H 1.09000 * 109.49025 * 174.60315 * 14 13 12 40 40 H 1.09002 * 109.46032 * 178.60253 * 15 14 13 41 41 H 1.08995 * 109.46251 * 58.62778 * 15 14 13 42 42 H 1.08998 * 109.47069 * 185.00038 * 18 16 15 43 43 H 1.08996 * 109.46803 * 304.99851 * 18 16 15 44 44 H 0.96997 * 120.00501 * 0.02562 * 19 18 16 45 45 H 0.97000 * 120.00011 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.58996 * 113.84165 * 28 12 10 47 47 H 1.09003 * 109.70049 * 353.47992 * 28 12 10 48 48 H 1.09000 * 109.49875 * 50.49712 * 29 8 7 49 49 H 1.09000 * 109.50209 * 170.59864 * 29 8 7 50 50 H 1.08999 * 109.73142 * 283.74573 * 30 5 4 51 51 H 1.09000 * 109.72667 * 44.37373 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5192 0.6814 0.0005 5 6 3.5816 -0.6155 0.0015 6 7 2.3076 -1.0831 0.0005 7 6 1.9368 -2.4980 -0.0020 8 6 3.1555 -3.3256 -0.4270 9 1 3.3633 -3.1498 -1.4824 10 6 2.8693 -4.7890 -0.2087 11 8 2.0472 -5.1298 0.6153 12 7 3.5271 -5.7190 -0.9290 13 6 4.4500 -5.3210 -2.0007 14 6 5.8072 -5.9877 -1.7550 15 6 5.6119 -7.4999 -1.6234 16 6 4.7048 -7.7963 -0.4269 17 1 5.1523 -7.3875 0.4790 18 6 4.5372 -9.3096 -0.2756 19 7 5.8296 -9.9128 0.0594 20 6 5.9260 -11.2663 0.2440 21 1 5.0494 -11.8890 0.1430 22 6 7.1505 -11.8379 0.5619 23 7 8.2188 -11.0790 0.6854 24 14 7.2820 -13.6840 0.8144 25 1 7.5926 -14.3400 -0.4811 26 1 8.3645 -13.9745 1.7885 27 1 5.9932 -14.2053 1.3366 28 6 3.3350 -7.1501 -0.6573 29 6 4.3715 -2.9136 0.4078 30 6 4.8052 -1.4970 0.0058 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3633 0.8899 -0.5138 33 1 -0.3633 -0.8901 -0.5138 34 1 1.1208 -2.6608 -0.7060 35 1 1.6222 -2.7974 0.9978 36 1 4.0531 -5.6436 -2.9633 37 1 4.5692 -4.2376 -1.9967 38 1 6.2442 -5.5961 -0.8364 39 1 6.4722 -5.7784 -2.5928 40 1 6.5792 -7.9793 -1.4732 41 1 5.1519 -7.8871 -2.5325 42 1 3.8218 -9.5182 0.5198 43 1 4.1718 -9.7301 -1.2124 44 1 6.6169 -9.3536 0.1504 45 1 9.0744 -11.4784 0.9072 46 1 2.8473 -7.6218 -1.5103 47 1 2.7176 -7.2756 0.2322 48 1 4.1086 -2.9286 1.4655 49 1 5.1904 -3.6096 0.2260 50 1 5.2492 -1.5149 -0.9895 51 1 5.5302 -1.1165 0.7253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566913565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:07 Heat of formation + Delta-G solvation = 22.309228 kcal Electronic energy + Delta-G solvation = -31083.050635 eV Core-core repulsion = 27017.464007 eV Total energy + Delta-G solvation = -4065.586628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.38409 -41.61041 -39.19026 -37.77826 -36.64232 -35.18853 -34.41291 -32.95031 -32.70586 -31.74026 -31.25509 -28.36018 -27.48534 -26.82211 -25.62546 -24.63009 -23.95285 -23.10631 -22.39239 -21.45472 -20.82721 -19.67770 -19.21597 -18.65281 -17.70002 -17.46849 -17.05700 -16.58625 -16.25045 -16.06363 -15.75523 -15.55515 -15.34710 -15.17578 -15.07091 -14.93820 -14.80058 -14.58687 -14.05796 -13.93485 -13.81385 -13.59455 -13.45768 -13.37022 -13.18986 -13.06758 -12.78346 -12.72513 -12.60698 -12.27028 -12.16409 -12.15455 -12.01703 -11.92950 -11.71153 -11.56325 -11.38315 -11.36010 -11.11236 -10.92577 -10.81576 -10.03514 -9.69229 -8.99593 -7.96157 -5.24272 0.78761 1.31122 1.43648 1.47172 1.48181 1.56663 1.76905 1.93264 2.55513 3.05952 3.16597 3.25741 3.37477 3.49553 3.54163 3.71330 3.79017 3.88209 3.89854 3.98469 4.06781 4.08785 4.18730 4.29662 4.32312 4.41983 4.45497 4.49253 4.59449 4.63569 4.65063 4.71546 4.78030 4.80694 4.83249 4.86154 4.89772 4.95548 4.98296 5.00502 5.02823 5.20932 5.23495 5.27277 5.43254 5.45039 5.50112 5.54071 5.86831 6.26395 6.33959 7.01348 7.33221 7.67049 8.09117 8.32546 9.27194 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025835 B = 0.001996 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.556827 B =14024.111420 C =14416.893376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.180 3.820 3 N -0.347 5.347 4 N -0.335 5.335 5 C 0.175 3.825 6 N -0.468 5.468 7 C 0.121 3.879 8 C -0.113 4.113 9 H 0.136 0.864 10 C 0.527 3.473 11 O -0.577 6.577 12 N -0.600 5.600 13 C 0.101 3.899 14 C -0.129 4.129 15 C -0.109 4.109 16 C -0.092 4.092 17 H 0.055 0.945 18 C 0.157 3.843 19 N -0.741 5.741 20 C -0.245 4.245 21 H 0.074 0.926 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.972 3.028 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.272 1.272 28 C 0.128 3.872 29 C -0.112 4.112 30 C -0.025 4.025 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.013 0.987 43 H 0.027 0.973 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.108 0.892 50 H 0.125 0.875 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.080 20.831 -8.106 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 N -0.187 5.187 4 N -0.173 5.173 5 C -0.094 4.094 6 N -0.159 5.159 7 C -0.001 4.001 8 C -0.134 4.134 9 H 0.153 0.847 10 C 0.315 3.685 11 O -0.457 6.457 12 N -0.331 5.331 13 C -0.020 4.020 14 C -0.167 4.167 15 C -0.147 4.147 16 C -0.112 4.112 17 H 0.073 0.927 18 C 0.030 3.970 19 N -0.384 5.384 20 C -0.377 4.377 21 H 0.092 0.908 22 C -0.267 4.267 23 N -0.618 5.618 24 Si 0.801 3.199 25 H -0.212 1.212 26 H -0.223 1.223 27 H -0.197 1.197 28 C 0.005 3.995 29 C -0.150 4.150 30 C -0.064 4.064 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.134 0.866 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.031 0.969 43 H 0.045 0.955 44 H 0.208 0.792 45 H 0.060 0.940 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.127 0.873 50 H 0.143 0.857 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.191 21.931 -7.679 26.719 hybrid contribution 0.291 -2.408 0.637 2.507 sum -12.900 19.523 -7.041 24.436 Atomic orbital electron populations 1.20435 0.80923 1.05940 1.05276 1.25387 0.98600 0.82280 1.02509 1.74395 0.96696 1.25543 1.22076 1.73952 1.12812 1.09906 1.20680 1.25333 0.88395 0.92223 1.03461 1.46077 1.06674 1.08809 1.54335 1.21893 0.98223 0.74465 1.05536 1.21619 0.96477 0.90381 1.04951 0.84662 1.20427 0.80189 0.87948 0.79971 1.90726 1.35622 1.82754 1.36565 1.48125 1.43937 1.05768 1.35235 1.22166 0.88364 1.01668 0.89807 1.21917 0.97349 0.93901 1.03492 1.21470 0.99012 0.97082 0.97131 1.21473 0.96364 0.94218 0.99141 0.92656 1.20741 0.87587 0.91784 0.96924 1.42516 1.06664 1.04580 1.84677 1.19622 0.94317 0.85347 1.38432 0.90831 1.25542 0.95589 1.02163 1.03436 1.69803 0.99516 1.35609 1.56902 0.85161 0.77157 0.80349 0.77222 1.21244 1.22251 1.19662 1.21412 0.95849 0.79839 1.02400 1.21679 0.96908 0.96693 0.99722 1.20404 0.89903 0.89703 1.06420 0.88451 0.87995 0.88164 0.86288 0.88528 0.89173 0.86564 0.91664 0.88397 0.93735 0.91388 0.96949 0.95540 0.79239 0.94000 0.89841 0.90736 0.91449 0.87323 0.85690 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.29 71.24 0.73 0.11 16 2 C 0.18 3.38 8.07 138.15 1.11 4.50 16 3 N -0.35 -9.19 12.23 -50.46 -0.62 -9.81 16 4 N -0.34 -8.86 12.21 -50.28 -0.61 -9.48 16 5 C 0.17 3.27 7.75 138.14 1.07 4.34 16 6 N -0.47 -7.65 3.11 -504.64 -1.57 -9.22 16 7 C 0.12 1.46 5.76 86.53 0.50 1.96 16 8 C -0.11 -1.19 1.70 -11.38 -0.02 -1.21 16 9 H 0.14 0.72 6.26 -2.39 -0.01 0.70 16 10 C 0.53 9.36 6.79 87.66 0.60 9.95 16 11 O -0.58 -15.12 15.33 -3.03 -0.05 -15.17 16 12 N -0.60 -10.16 2.97 -818.90 -2.43 -12.59 16 13 C 0.10 1.04 6.27 86.36 0.54 1.58 16 14 C -0.13 -1.94 6.08 30.67 0.19 -1.75 16 15 C -0.11 -2.70 5.06 30.62 0.15 -2.55 16 16 C -0.09 -2.63 2.37 -10.71 -0.03 -2.66 16 17 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 18 C 0.16 5.94 5.66 86.38 0.49 6.43 16 19 N -0.74 -36.60 5.32 -343.45 -1.83 -38.42 16 20 C -0.25 -13.52 9.99 84.03 0.84 -12.68 16 21 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 23 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 24 Si 0.97 45.61 29.55 68.60 2.03 47.63 16 25 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 C 0.13 2.94 5.70 86.36 0.49 3.44 16 29 C -0.11 -1.14 5.08 30.81 0.16 -0.98 16 30 C -0.03 -0.26 6.34 30.05 0.19 -0.07 16 31 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.48 7.76 -2.38 -0.02 0.46 16 34 H 0.12 0.98 7.85 -2.39 -0.02 0.96 16 35 H 0.10 1.44 7.52 -2.39 -0.02 1.42 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 37 H 0.12 0.46 5.35 -2.39 -0.01 0.45 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.04 1.44 7.15 -2.39 -0.02 1.42 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 43 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 44 H 0.38 19.58 6.85 -92.71 -0.63 18.95 16 45 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 46 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.07 2.02 7.04 -2.39 -0.02 2.00 16 48 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 49 H 0.11 0.89 8.09 -2.39 -0.02 0.87 16 50 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -79.96 399.33 2.99 -76.97 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.30 Total: 21.39 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 7.48 Total: 6.62 kcal Atomic # 7 Polarization: -130.67 SS G_CDS: -6.78 Total: -137.45 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.05 Total: -15.17 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -79.96 2.99 -76.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566913565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.278 kcal (2) G-P(sol) polarization free energy of solvation -79.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds