Wall clock time and date at job start Wed Apr 1 2020 05:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36598 * 126.58177 * 2 1 4 4 C 1.47523 * 125.76867 * 359.95122 * 3 2 1 5 5 O 1.21595 * 120.00195 * 354.02440 * 4 3 2 6 6 N 1.34784 * 120.00028 * 174.01841 * 4 3 2 7 7 C 1.46928 * 120.62872 * 354.98983 * 6 4 3 8 8 C 1.53191 * 108.77482 * 126.36796 * 7 6 4 9 9 C 1.53040 * 109.31362 * 54.63206 * 8 7 6 10 10 C 1.53039 * 109.53715 * 298.63710 * 9 8 7 11 11 H 1.09006 * 109.49569 * 301.40587 * 10 9 8 12 12 C 1.50704 * 109.49393 * 181.34995 * 10 9 8 13 13 H 1.08000 * 120.00379 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99831 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99907 * 179.97438 * 14 12 10 16 16 Si 1.86797 * 119.99966 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47211 * 89.99875 * 16 14 12 18 18 H 1.48499 * 109.47157 * 209.99603 * 16 14 12 19 19 H 1.48494 * 109.47361 * 329.99687 * 16 14 12 20 20 C 1.46926 * 120.63089 * 174.70579 * 6 4 3 21 21 N 1.34401 * 108.46176 * 180.22344 * 3 2 1 22 22 N 1.28763 * 109.51871 * 359.57998 * 21 3 2 23 23 N 1.34814 * 126.58037 * 179.97438 * 2 1 3 24 24 C 1.46501 * 126.59468 * 359.97438 * 23 2 1 25 25 C 1.53122 * 109.52181 * 239.87652 * 24 23 2 26 26 C 1.53042 * 109.27170 * 182.50297 * 25 24 23 27 27 N 1.46850 * 109.57477 * 59.08152 * 26 25 24 28 28 C 1.46845 * 111.19969 * 298.28779 * 27 26 25 29 29 C 1.53036 * 109.52092 * 61.74150 * 28 27 26 30 30 H 1.09006 * 109.46999 * 90.02609 * 1 2 3 31 31 H 1.08996 * 109.47209 * 210.02477 * 1 2 3 32 32 H 1.09001 * 109.47178 * 330.03029 * 1 2 3 33 33 H 1.08995 * 109.58375 * 246.15695 * 7 6 4 34 34 H 1.09001 * 109.58859 * 6.43460 * 7 6 4 35 35 H 1.08994 * 109.49579 * 174.58885 * 8 7 6 36 36 H 1.09001 * 109.49510 * 294.67914 * 8 7 6 37 37 H 1.08999 * 109.45707 * 58.65441 * 9 8 7 38 38 H 1.09005 * 109.45751 * 178.61475 * 9 8 7 39 39 H 0.96999 * 119.99477 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.58469 * 353.41986 * 20 6 4 41 41 H 1.09001 * 109.58516 * 113.84496 * 20 6 4 42 42 H 1.09004 * 109.51934 * 359.97438 * 24 23 2 43 43 H 1.09008 * 109.49990 * 302.37969 * 25 24 23 44 44 H 1.08996 * 109.50356 * 62.49863 * 25 24 23 45 45 H 1.08997 * 109.41194 * 299.06728 * 26 25 24 46 46 H 1.09000 * 109.44914 * 179.12108 * 26 25 24 47 47 H 1.00905 * 110.99764 * 174.18523 * 27 26 25 48 48 H 1.08998 * 109.46010 * 301.72994 * 28 27 26 49 49 H 1.08994 * 109.45300 * 181.75727 * 28 27 26 50 50 H 1.09004 * 109.50193 * 180.87801 * 29 28 27 51 51 H 1.09002 * 109.53607 * 60.78908 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0010 5 8 0.6915 2.7645 -0.1116 6 7 2.7756 3.4969 0.1207 7 6 4.1929 3.1962 0.3648 8 6 5.0375 3.9042 -0.6992 9 6 4.7029 5.3975 -0.7000 10 6 3.2253 5.5907 -1.0488 11 1 3.0218 5.1522 -2.0257 12 6 2.9047 7.0629 -1.0818 13 1 3.6771 7.7886 -0.8743 14 6 1.6252 7.4833 -1.3768 15 7 1.3452 8.7680 -1.4051 16 14 0.2889 6.2281 -1.7350 17 1 -0.3921 5.8552 -0.4691 18 1 -0.7002 6.8129 -2.6756 19 1 0.8968 5.0183 -2.3449 20 6 2.3611 4.9018 0.0057 21 7 3.5984 0.6789 -0.0050 22 7 3.6299 -0.6083 0.0008 23 7 2.3104 -1.0826 0.0005 24 6 1.8863 -2.4849 0.0016 25 6 2.4320 -3.1834 1.2502 26 6 2.0386 -4.6620 1.2144 27 7 2.5840 -5.2870 0.0026 28 6 2.0365 -4.6633 -1.2089 29 6 2.4311 -3.1852 -1.2462 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8903 0.5134 33 1 4.4771 3.5538 1.3545 34 1 4.3536 2.1198 0.3053 35 1 6.0952 3.7684 -0.4737 36 1 4.8169 3.4814 -1.6793 37 1 4.9003 5.8144 0.2876 38 1 5.3203 5.9076 -1.4394 39 1 0.4449 9.0637 -1.6123 40 1 1.3140 4.9505 -0.2933 41 1 2.4929 5.4014 0.9655 42 1 0.7975 -2.5361 0.0025 43 1 3.5184 -3.0971 1.2700 44 1 2.0129 -2.7159 2.1412 45 1 0.9520 -4.7478 1.2097 46 1 2.4389 -5.1655 2.0943 47 1 2.4186 -6.2824 0.0033 48 1 0.9499 -4.7491 -1.2022 49 1 2.4352 -5.1681 -2.0889 50 1 2.0115 -2.7189 -2.1376 51 1 3.5174 -3.0984 -1.2673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579522001.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:12 Heat of formation + Delta-G solvation = 46.808689 kcal Electronic energy + Delta-G solvation = -31828.149068 eV Core-core repulsion = 27763.624816 eV Total energy + Delta-G solvation = -4064.524252 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.51868 -40.98956 -39.65483 -38.54181 -36.00671 -35.20557 -33.68130 -33.63295 -32.35869 -31.94831 -31.35782 -29.07394 -27.05997 -26.60822 -25.75189 -24.11720 -23.98082 -23.54458 -22.24885 -21.43958 -20.81804 -20.05857 -18.97202 -18.64267 -17.64911 -17.37267 -17.25635 -17.08128 -16.40503 -15.97722 -15.68767 -15.66962 -15.36354 -15.15185 -14.99378 -14.86873 -14.62327 -14.60577 -14.54435 -14.13307 -14.05779 -13.92320 -13.64812 -13.34588 -13.29164 -13.04421 -12.82892 -12.62575 -12.40839 -12.31752 -12.27934 -12.15056 -12.10227 -11.79338 -11.60634 -11.47166 -11.32908 -11.06444 -11.01945 -10.78675 -10.63503 -10.29786 -9.56980 -9.41932 -8.37734 -6.40225 0.03006 0.50576 0.91934 1.25341 1.30440 1.41726 1.95618 2.12902 2.23472 2.97645 3.02153 3.12142 3.23757 3.41094 3.52290 3.60447 3.74577 3.91094 4.01608 4.07305 4.13032 4.15911 4.22128 4.30344 4.31336 4.43123 4.50622 4.52523 4.56216 4.59250 4.63855 4.65316 4.70526 4.76591 4.87673 4.91032 4.96048 5.01017 5.02306 5.12999 5.17706 5.19977 5.31169 5.40513 5.47560 5.54001 5.60973 5.73539 6.00805 6.26636 6.38002 6.48095 6.67231 6.80400 7.06629 7.25165 8.78273 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.002728 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.288332 B =10261.174229 C =11039.203910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.133 3.867 3 C -0.122 4.122 4 C 0.588 3.412 5 O -0.575 6.575 6 N -0.595 5.595 7 C 0.069 3.931 8 C -0.121 4.121 9 C -0.098 4.098 10 C 0.005 3.995 11 H 0.013 0.987 12 C -0.512 4.512 13 H 0.050 0.950 14 C 0.027 3.973 15 N -0.937 5.937 16 Si 0.937 3.063 17 H -0.273 1.273 18 H -0.290 1.290 19 H -0.269 1.269 20 C 0.111 3.889 21 N -0.215 5.215 22 N -0.073 5.073 23 N -0.340 5.340 24 C 0.142 3.858 25 C -0.123 4.123 26 C 0.067 3.933 27 N -0.705 5.705 28 C 0.068 3.932 29 C -0.124 4.124 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.268 0.732 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.135 0.865 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.093 0.907 47 H 0.361 0.639 48 H 0.053 0.947 49 H 0.092 0.908 50 H 0.075 0.925 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 -35.119 4.924 35.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.005 4.005 3 C -0.261 4.261 4 C 0.375 3.625 5 O -0.455 6.455 6 N -0.326 5.326 7 C -0.053 4.053 8 C -0.159 4.159 9 C -0.135 4.135 10 C -0.015 4.015 11 H 0.031 0.969 12 C -0.550 4.550 13 H 0.068 0.932 14 C -0.172 4.172 15 N -0.577 5.577 16 Si 0.766 3.234 17 H -0.200 1.200 18 H -0.218 1.218 19 H -0.194 1.194 20 C -0.011 4.011 21 N -0.087 5.087 22 N -0.052 5.052 23 N -0.126 5.126 24 C 0.042 3.958 25 C -0.162 4.162 26 C -0.063 4.063 27 N -0.338 5.338 28 C -0.062 4.062 29 C -0.163 4.163 30 H 0.121 0.879 31 H 0.133 0.867 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.163 0.837 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.153 0.847 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.111 0.889 47 H 0.181 0.819 48 H 0.071 0.929 49 H 0.110 0.890 50 H 0.094 0.906 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.740 -34.921 4.844 35.264 hybrid contribution -2.425 0.517 -0.316 2.499 sum -1.684 -34.405 4.528 34.742 Atomic orbital electron populations 1.20807 0.82697 1.06043 1.05620 1.22203 0.97297 0.85633 0.95376 1.21020 0.89906 0.94580 1.20585 1.17288 0.85097 0.83675 0.76422 1.90711 1.17288 1.84052 1.53481 1.48222 1.09860 1.05729 1.68740 1.22966 0.77724 1.05884 0.98747 1.21844 1.00679 0.94627 0.98709 1.21401 0.94972 0.95945 1.01222 1.19334 0.94804 0.93724 0.93607 0.96915 1.21260 0.95753 0.91335 1.46661 0.93159 1.25660 1.00515 0.96285 0.94714 1.69993 1.21576 1.15412 1.50700 0.86047 0.79764 0.79155 0.78399 1.19964 1.21755 1.19442 1.22098 0.99071 0.79368 1.00551 1.74014 1.18668 1.04252 1.11803 1.81866 0.97964 1.02981 1.22364 1.50736 1.05095 1.07966 1.48840 1.22199 1.01721 0.72929 0.98909 1.21956 1.02399 0.96288 0.95536 1.21857 0.98278 0.92334 0.93817 1.60193 1.62904 1.09087 1.01665 1.21841 0.98242 0.92272 0.93875 1.21945 1.02344 0.96360 0.95602 0.87945 0.86749 0.89182 0.91054 0.83654 0.88130 0.93033 0.92230 0.92440 0.92292 0.92662 0.91611 0.84705 0.91375 0.90238 0.92873 0.88859 0.81896 0.92871 0.88999 0.90611 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 9.35 71.23 0.67 -0.99 16 2 C 0.13 3.23 7.02 41.72 0.29 3.52 16 3 C -0.12 -3.94 6.75 40.82 0.28 -3.67 16 4 C 0.59 23.57 7.68 86.69 0.67 24.24 16 5 O -0.58 -25.64 14.23 -4.01 -0.06 -25.70 16 6 N -0.60 -24.41 2.98 -823.51 -2.45 -26.86 16 7 C 0.07 2.32 6.33 86.36 0.55 2.86 16 8 C -0.12 -3.98 6.08 30.67 0.19 -3.79 16 9 C -0.10 -3.94 5.11 30.62 0.16 -3.78 16 10 C 0.00 0.24 1.83 -11.61 -0.02 0.22 16 11 H 0.01 0.67 7.20 -2.38 -0.02 0.66 16 12 C -0.51 -29.97 9.15 25.60 0.23 -29.74 16 13 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 14 C 0.03 1.63 5.45 84.65 0.46 2.09 16 15 N -0.94 -59.68 13.96 21.45 0.30 -59.38 16 16 Si 0.94 50.10 24.32 68.60 1.67 51.77 16 17 H -0.27 -14.56 6.93 99.48 0.69 -13.87 16 18 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 19 H -0.27 -14.45 6.53 99.48 0.65 -13.80 16 20 C 0.11 5.30 5.08 86.22 0.44 5.74 16 21 N -0.22 -6.65 8.68 -49.99 -0.43 -7.08 16 22 N -0.07 -1.96 13.67 37.02 0.51 -1.46 16 23 N -0.34 -6.94 3.29 -313.02 -1.03 -7.97 16 24 C 0.14 1.66 3.02 45.07 0.14 1.80 16 25 C -0.12 -1.29 5.66 30.65 0.17 -1.12 16 26 C 0.07 0.38 6.55 86.33 0.57 0.94 16 27 N -0.70 -4.69 6.85 -514.01 -3.52 -8.21 16 28 C 0.07 0.42 6.55 86.33 0.57 0.98 16 29 C -0.12 -1.40 5.65 30.64 0.17 -1.23 16 30 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.11 0.99 7.18 -2.39 -0.02 0.98 16 32 H 0.09 2.12 6.57 -2.39 -0.02 2.10 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.15 4.64 3.63 -97.95 -0.36 4.28 16 35 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 40 H 0.06 2.89 2.35 -2.39 -0.01 2.89 16 41 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.14 0.82 6.79 -2.38 -0.02 0.80 16 43 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.36 1.04 8.90 -89.69 -0.80 0.24 16 48 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 49 H 0.09 0.48 8.14 -2.39 -0.02 0.47 16 50 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -77.95 386.83 0.23 -77.72 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -0.27 Total: 9.09 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 5.52 Total: -1.92 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -6.63 Total: -110.96 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.06 Total: -25.70 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 1.67 Total: 51.77 kcal Total: -77.95 0.23 -77.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579522001.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.525 kcal (2) G-P(sol) polarization free energy of solvation -77.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds