Wall clock time and date at job start Wed Apr 1 2020 04:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38631 * 120.39976 * 2 1 4 4 C 1.38589 * 118.55606 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.39427 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47288 * 95.00443 * 5 4 3 7 7 C 1.34775 * 120.00555 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99555 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00303 * 180.02562 * 7 6 5 10 10 H 1.08990 * 109.47465 * 39.99472 * 9 7 6 11 11 N 1.46901 * 109.46865 * 159.99804 * 9 7 6 12 12 C 1.53000 * 109.46738 * 279.99439 * 9 7 6 13 13 C 1.52997 * 109.47060 * 175.00110 * 12 9 7 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14 20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14 22 22 N 1.32281 * 119.19766 * 0.25439 * 4 3 2 23 23 C 1.32481 * 120.74633 * 359.48657 * 22 4 3 24 24 N 1.38397 * 119.22104 * 180.28528 * 23 22 4 25 25 C 1.48532 * 111.00167 * 62.83597 * 24 23 22 26 26 C 1.54937 * 103.22905 * 159.72024 * 25 24 23 27 27 C 1.54591 * 102.92409 * 322.58707 * 26 25 24 28 28 C 1.47904 * 111.00264 * 180.23207 * 24 23 22 29 29 N 1.32262 * 120.40470 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47247 * 90.00156 * 1 2 3 31 31 H 1.09003 * 109.47330 * 209.99450 * 1 2 3 32 32 H 1.09000 * 109.47796 * 330.00021 * 1 2 3 33 33 H 1.08000 * 120.72195 * 0.02562 * 3 2 1 34 34 H 1.08992 * 109.47557 * 334.99899 * 5 4 3 35 35 H 1.09001 * 109.46764 * 214.99847 * 5 4 3 36 36 H 0.97005 * 120.00198 * 359.97438 * 6 5 4 37 37 H 1.00897 * 111.00316 * 296.03838 * 11 9 7 38 38 H 1.00902 * 111.00138 * 60.00335 * 11 9 7 39 39 H 1.09002 * 109.47398 * 295.00279 * 12 9 7 40 40 H 1.09001 * 109.47194 * 55.00459 * 12 9 7 41 41 H 1.09002 * 109.47153 * 300.00319 * 13 12 9 42 42 H 1.08998 * 109.47533 * 59.99948 * 13 12 9 43 43 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 44 44 H 1.08998 * 110.66587 * 278.15861 * 25 24 23 45 45 H 1.08999 * 110.66682 * 41.28763 * 25 24 23 46 46 H 1.09011 * 110.72176 * 204.22850 * 26 25 24 47 47 H 1.08994 * 110.87490 * 81.01844 * 26 25 24 48 48 H 1.09007 * 110.31209 * 263.04366 * 27 26 25 49 49 H 1.08998 * 110.31188 * 140.87293 * 27 26 25 50 50 H 1.09001 * 109.91467 * 333.50857 * 28 24 23 51 51 H 1.09004 * 109.91650 * 94.80281 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1957 0.0000 4 6 3.5936 1.1511 0.0005 5 6 4.3975 2.4258 0.0000 6 7 4.7594 2.7755 1.3758 7 6 5.4848 3.8847 1.6207 8 8 5.8383 4.5931 0.7019 9 6 5.8575 4.2441 3.0359 10 1 6.1270 3.3399 3.5815 11 7 7.0007 5.1666 3.0219 12 6 4.6670 4.9177 3.7214 13 6 5.0015 5.1699 5.1929 14 6 3.8288 5.8328 5.8683 15 1 2.9340 6.0519 5.3045 16 6 3.8975 6.1586 7.2063 17 7 4.9869 5.8913 7.8929 18 14 2.4440 6.9809 8.0433 19 1 1.2542 6.0972 7.9499 20 1 2.7682 7.2244 9.4718 21 1 2.1538 8.2741 7.3735 22 7 4.2014 -0.0238 -0.0041 23 6 3.5014 -1.1485 0.0010 24 7 4.1698 -2.3603 0.0019 25 6 4.9852 -2.5176 1.2335 26 6 5.2072 -4.0486 1.3187 27 6 3.8571 -4.6214 0.8297 28 6 3.2168 -3.4914 0.0023 29 7 2.1763 -1.1407 0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3635 0.8899 0.5138 33 1 1.6869 2.1414 0.0004 34 1 3.8038 3.2297 -0.4351 35 1 5.3036 2.2836 -0.5890 36 1 4.4770 2.2088 2.1106 37 1 7.8188 4.7228 2.6324 38 1 6.7758 6.0135 2.5216 39 1 4.4537 5.8667 3.2295 40 1 3.7938 4.2689 3.6534 41 1 5.2149 4.2209 5.6848 42 1 5.8747 5.8187 5.2610 43 1 5.0351 6.1202 8.8343 44 1 5.9370 -1.9958 1.1339 45 1 4.4382 -2.1591 2.1054 46 1 5.4058 -4.3529 2.3464 47 1 6.0191 -4.3605 0.6618 48 1 3.2230 -4.8738 1.6797 49 1 4.0225 -5.5000 0.2061 50 1 2.2760 -3.1841 0.4589 51 1 3.0435 -3.8313 -1.0188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579601803.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:44 Heat of formation + Delta-G solvation = 15.986104 kcal Electronic energy + Delta-G solvation = -30070.797098 eV Core-core repulsion = 26004.936278 eV Total energy + Delta-G solvation = -4065.860819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.76311 -39.82712 -39.06306 -35.92840 -35.14395 -34.48319 -33.27705 -32.80586 -30.70464 -30.12547 -29.73482 -28.87555 -27.62894 -25.94423 -24.20541 -23.48610 -22.22241 -21.56829 -20.92666 -20.72285 -19.84793 -18.09498 -17.79859 -17.10882 -16.53215 -16.30690 -16.09663 -15.82689 -15.58435 -15.33955 -14.81859 -14.49842 -14.35097 -14.28165 -13.93768 -13.72949 -13.58399 -13.31269 -13.27192 -12.91813 -12.81782 -12.57760 -12.49397 -12.32397 -12.02788 -11.87392 -11.64022 -11.55680 -11.28926 -10.94919 -10.89337 -10.86245 -10.67653 -10.59345 -10.39026 -10.14263 -9.81597 -9.54148 -9.39170 -9.18058 -9.02305 -8.79607 -8.36914 -8.22157 -5.95038 -3.97385 0.52531 0.66517 2.71720 2.75778 3.12133 3.34461 3.39355 3.41230 3.42867 3.60893 3.93116 4.09289 4.31479 4.35920 4.48463 4.56132 4.67073 4.79979 4.85633 4.87328 4.93554 5.02184 5.08785 5.11733 5.16790 5.33541 5.35043 5.39113 5.40349 5.43116 5.45350 5.51818 5.52723 5.59546 5.60738 5.74703 5.80990 5.89068 6.13234 6.26875 6.41241 6.42261 6.62688 6.87993 7.06455 7.32301 7.53013 7.74385 7.79003 7.79492 7.94613 8.11882 8.23804 8.46756 9.10420 9.65675 11.15834 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009831 B = 0.002254 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.439945 B =12420.850621 C =12818.063689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.201 3.799 3 C -0.238 4.238 4 C 0.186 3.814 5 C 0.171 3.829 6 N -0.723 5.723 7 C 0.487 3.513 8 O -0.551 6.551 9 C 0.080 3.920 10 H 0.098 0.902 11 N -0.806 5.806 12 C -0.095 4.095 13 C 0.031 3.969 14 C -0.523 4.523 15 H 0.051 0.949 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 N -0.514 5.514 23 C 0.490 3.510 24 N -0.446 5.446 25 C 0.054 3.946 26 C -0.125 4.125 27 C -0.133 4.133 28 C 0.038 3.962 29 N -0.549 5.549 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.151 0.849 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.404 0.596 37 H 0.335 0.665 38 H 0.348 0.652 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.012 0.988 42 H 0.036 0.964 43 H 0.260 0.740 44 H 0.098 0.902 45 H 0.054 0.946 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.085 0.915 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.240 -20.363 -17.590 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.053 3.947 3 C -0.261 4.261 4 C 0.038 3.962 5 C 0.046 3.954 6 N -0.377 5.377 7 C 0.273 3.727 8 O -0.428 6.428 9 C -0.036 4.036 10 H 0.116 0.884 11 N -0.334 5.334 12 C -0.133 4.133 13 C -0.006 4.006 14 C -0.562 4.562 15 H 0.069 0.931 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 N -0.233 5.233 23 C 0.134 3.866 24 N -0.167 5.167 25 C -0.072 4.072 26 C -0.163 4.163 27 C -0.171 4.171 28 C -0.089 4.089 29 N -0.270 5.270 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.169 0.831 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.238 0.762 37 H 0.146 0.854 38 H 0.162 0.838 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.031 0.969 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.103 0.897 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.116 -20.719 -17.743 27.587 hybrid contribution -1.889 0.795 0.152 2.055 sum -6.005 -19.925 -17.591 27.249 Atomic orbital electron populations 1.20820 0.87442 1.04401 1.03813 1.21620 0.97489 0.87468 0.88096 1.22551 0.95371 1.00855 1.07372 1.21497 0.91355 0.92965 0.90387 1.20098 0.99027 0.90429 0.85840 1.46056 1.56429 1.27464 1.07751 1.22826 0.76458 0.79271 0.94155 1.90658 1.54523 1.50784 1.46836 1.21842 0.94840 0.97959 0.88933 0.88399 1.58996 1.04577 1.07996 1.61811 1.21663 0.92746 0.98729 1.00208 1.19011 0.97362 0.97224 0.86982 1.21233 1.00766 1.39466 0.94688 0.93055 1.24993 0.95769 0.95994 0.97569 1.69966 1.26882 1.47759 1.08553 0.86710 0.83019 0.80055 0.78493 1.20405 1.21326 1.20290 1.67833 1.40923 0.97432 1.17106 1.21131 0.85003 0.90470 0.90045 1.61311 1.19979 0.98743 1.36645 1.23253 0.98228 0.97512 0.88218 1.22542 0.97963 0.93538 1.02237 1.22463 0.96590 0.98166 0.99881 1.22961 0.95411 0.88566 1.01936 1.68127 1.08775 1.30897 1.19158 0.89487 0.89884 0.89633 0.83116 0.89292 0.89359 0.76208 0.85352 0.83772 0.92738 0.92907 0.96920 0.94612 0.93025 0.88364 0.92728 0.90106 0.90147 0.90929 0.90493 0.89691 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.22 36.00 0.37 -0.29 16 2 C 0.20 1.92 6.82 -82.26 -0.56 1.35 16 3 C -0.24 -2.27 9.51 -39.31 -0.37 -2.64 16 4 C 0.19 2.08 6.19 -82.27 -0.51 1.57 16 5 C 0.17 1.95 6.02 -5.20 -0.03 1.92 16 6 N -0.72 -9.12 5.55 -61.48 -0.34 -9.47 16 7 C 0.49 7.51 7.07 -10.99 -0.08 7.43 16 8 O -0.55 -9.88 16.25 5.55 0.09 -9.79 16 9 C 0.08 1.33 3.15 -68.86 -0.22 1.11 16 10 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 11 N -0.81 -13.46 8.44 -5.66 -0.05 -13.51 16 12 C -0.10 -1.88 4.78 -26.73 -0.13 -2.01 16 13 C 0.03 0.79 4.86 -27.89 -0.14 0.66 16 14 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 15 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 N -0.51 -6.46 10.16 -10.16 -0.10 -6.57 16 23 C 0.49 5.91 6.98 -322.81 -2.25 3.66 16 24 N -0.45 -4.73 5.35 -171.42 -0.92 -5.65 16 25 C 0.05 0.48 6.31 -1.90 -0.01 0.47 16 26 C -0.12 -0.81 7.06 -24.87 -0.18 -0.98 16 27 C -0.13 -0.82 6.93 -25.37 -0.18 -1.00 16 28 C 0.04 0.32 6.33 -2.75 -0.02 0.31 16 29 N -0.55 -6.12 8.08 -10.15 -0.08 -6.20 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 33 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.40 4.70 8.46 -40.82 -0.35 4.35 16 37 H 0.33 4.88 9.06 -39.29 -0.36 4.52 16 38 H 0.35 5.87 8.58 -39.29 -0.34 5.53 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.52 7.99 -51.93 -0.42 0.11 16 46 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 0.78 6.46 -51.93 -0.34 0.45 16 51 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 419.21 15.07 6.32 6.32 Total: -1.00 -33.96 419.21 -12.57 -46.53 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -8.49 Total: 9.68 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -4.71 Total: -1.85 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -0.76 Total: -67.46 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.96 -12.57 -46.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579601803.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.515 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds