Wall clock time and date at job start Wed Apr 1 2020 04:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38631 * 120.39976 * 2 1 4 4 C 1.38589 * 118.55606 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.39427 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47288 * 95.00443 * 5 4 3 7 7 C 1.34775 * 120.00555 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99555 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00303 * 180.02562 * 7 6 5 10 10 H 1.08990 * 109.47465 * 39.99472 * 9 7 6 11 11 N 1.46901 * 109.46865 * 159.99804 * 9 7 6 12 12 C 1.53000 * 109.46738 * 279.99439 * 9 7 6 13 13 C 1.52997 * 109.47060 * 175.00110 * 12 9 7 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14 20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14 22 22 N 1.32281 * 119.19766 * 0.25439 * 4 3 2 23 23 C 1.32481 * 120.74633 * 359.48657 * 22 4 3 24 24 N 1.38397 * 119.22104 * 180.28528 * 23 22 4 25 25 C 1.48532 * 111.00167 * 62.83597 * 24 23 22 26 26 C 1.54937 * 103.22905 * 159.72024 * 25 24 23 27 27 C 1.54591 * 102.92409 * 322.58707 * 26 25 24 28 28 C 1.47904 * 111.00264 * 180.23207 * 24 23 22 29 29 N 1.32262 * 120.40470 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47247 * 90.00156 * 1 2 3 31 31 H 1.09003 * 109.47330 * 209.99450 * 1 2 3 32 32 H 1.09000 * 109.47796 * 330.00021 * 1 2 3 33 33 H 1.08000 * 120.72195 * 0.02562 * 3 2 1 34 34 H 1.08992 * 109.47557 * 334.99899 * 5 4 3 35 35 H 1.09001 * 109.46764 * 214.99847 * 5 4 3 36 36 H 0.97005 * 120.00198 * 359.97438 * 6 5 4 37 37 H 1.00897 * 111.00316 * 296.03838 * 11 9 7 38 38 H 1.00902 * 111.00138 * 60.00335 * 11 9 7 39 39 H 1.09002 * 109.47398 * 295.00279 * 12 9 7 40 40 H 1.09001 * 109.47194 * 55.00459 * 12 9 7 41 41 H 1.09002 * 109.47153 * 300.00319 * 13 12 9 42 42 H 1.08998 * 109.47533 * 59.99948 * 13 12 9 43 43 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 44 44 H 1.08998 * 110.66587 * 278.15861 * 25 24 23 45 45 H 1.08999 * 110.66682 * 41.28763 * 25 24 23 46 46 H 1.09011 * 110.72176 * 204.22850 * 26 25 24 47 47 H 1.08994 * 110.87490 * 81.01844 * 26 25 24 48 48 H 1.09007 * 110.31209 * 263.04366 * 27 26 25 49 49 H 1.08998 * 110.31188 * 140.87293 * 27 26 25 50 50 H 1.09001 * 109.91467 * 333.50857 * 28 24 23 51 51 H 1.09004 * 109.91650 * 94.80281 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1957 0.0000 4 6 3.5936 1.1511 0.0005 5 6 4.3975 2.4258 0.0000 6 7 4.7594 2.7755 1.3758 7 6 5.4848 3.8847 1.6207 8 8 5.8383 4.5931 0.7019 9 6 5.8575 4.2441 3.0359 10 1 6.1270 3.3399 3.5815 11 7 7.0007 5.1666 3.0219 12 6 4.6670 4.9177 3.7214 13 6 5.0015 5.1699 5.1929 14 6 3.8288 5.8328 5.8683 15 1 2.9340 6.0519 5.3045 16 6 3.8975 6.1586 7.2063 17 7 4.9869 5.8913 7.8929 18 14 2.4440 6.9809 8.0433 19 1 1.2542 6.0972 7.9499 20 1 2.7682 7.2244 9.4718 21 1 2.1538 8.2741 7.3735 22 7 4.2014 -0.0238 -0.0041 23 6 3.5014 -1.1485 0.0010 24 7 4.1698 -2.3603 0.0019 25 6 4.9852 -2.5176 1.2335 26 6 5.2072 -4.0486 1.3187 27 6 3.8571 -4.6214 0.8297 28 6 3.2168 -3.4914 0.0023 29 7 2.1763 -1.1407 0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3635 0.8899 0.5138 33 1 1.6869 2.1414 0.0004 34 1 3.8038 3.2297 -0.4351 35 1 5.3036 2.2836 -0.5890 36 1 4.4770 2.2088 2.1106 37 1 7.8188 4.7228 2.6324 38 1 6.7758 6.0135 2.5216 39 1 4.4537 5.8667 3.2295 40 1 3.7938 4.2689 3.6534 41 1 5.2149 4.2209 5.6848 42 1 5.8747 5.8187 5.2610 43 1 5.0351 6.1202 8.8343 44 1 5.9370 -1.9958 1.1339 45 1 4.4382 -2.1591 2.1054 46 1 5.4058 -4.3529 2.3464 47 1 6.0191 -4.3605 0.6618 48 1 3.2230 -4.8738 1.6797 49 1 4.0225 -5.5000 0.2061 50 1 2.2760 -3.1841 0.4589 51 1 3.0435 -3.8313 -1.0188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579601803.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:43 Heat of formation + Delta-G solvation = -7.616240 kcal Electronic energy + Delta-G solvation = -30071.820572 eV Core-core repulsion = 26004.936278 eV Total energy + Delta-G solvation = -4066.884294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.55040 -41.05723 -39.78183 -37.06695 -36.54712 -35.27670 -34.80634 -34.12377 -31.92476 -31.37329 -30.49364 -29.57476 -28.69179 -27.49039 -25.30131 -24.76270 -23.03905 -22.36166 -22.25914 -21.60919 -21.19412 -18.97708 -18.76674 -18.35406 -18.03717 -17.47933 -17.02298 -16.90619 -16.59703 -16.44713 -16.16933 -15.98193 -15.41407 -15.10871 -14.99950 -14.75593 -14.31986 -14.27103 -14.21796 -14.00181 -13.81904 -13.69776 -13.47110 -13.40392 -13.21545 -13.12521 -12.76690 -12.53265 -12.46505 -12.27757 -12.22966 -11.96561 -11.84211 -11.68687 -11.59176 -11.45124 -11.26016 -11.11171 -10.98868 -10.47792 -10.36037 -10.28075 -9.67042 -9.52544 -8.12823 -6.23140 -0.29126 -0.10870 1.42137 1.45240 1.46308 1.53035 1.93010 2.17637 2.45304 2.56824 2.84231 3.16254 3.20275 3.43169 3.55541 3.65552 3.74769 3.79343 3.92409 4.04078 4.09495 4.13039 4.22452 4.23157 4.31302 4.42842 4.47214 4.52981 4.65230 4.69635 4.74496 4.78556 4.81908 4.87947 4.93919 4.94516 5.01568 5.08234 5.18484 5.19490 5.26244 5.26996 5.50101 5.58108 5.64516 5.85259 5.99809 6.07657 6.11057 6.31016 6.33654 6.52329 6.95715 6.98910 7.03164 7.44964 8.98276 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009831 B = 0.002254 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.439945 B =12420.850621 C =12818.063689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.193 3.807 3 C -0.234 4.234 4 C 0.175 3.825 5 C 0.176 3.824 6 N -0.710 5.710 7 C 0.496 3.504 8 O -0.575 6.575 9 C 0.087 3.913 10 H 0.107 0.893 11 N -0.818 5.818 12 C -0.081 4.081 13 C 0.039 3.961 14 C -0.543 4.543 15 H 0.058 0.942 16 C 0.000 4.000 17 N -0.931 5.931 18 Si 0.959 3.041 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.270 1.270 22 N -0.539 5.539 23 C 0.474 3.526 24 N -0.460 5.460 25 C 0.053 3.947 26 C -0.118 4.118 27 C -0.126 4.126 28 C 0.038 3.962 29 N -0.557 5.557 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.175 0.825 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.410 0.590 37 H 0.347 0.653 38 H 0.347 0.653 39 H 0.047 0.953 40 H 0.068 0.932 41 H -0.008 1.008 42 H 0.006 0.994 43 H 0.262 0.738 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.075 0.925 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 -21.104 -18.060 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.046 3.954 3 C -0.257 4.257 4 C 0.028 3.972 5 C 0.052 3.948 6 N -0.362 5.362 7 C 0.281 3.719 8 O -0.454 6.454 9 C -0.029 4.029 10 H 0.124 0.876 11 N -0.347 5.347 12 C -0.119 4.119 13 C 0.001 3.999 14 C -0.581 4.581 15 H 0.076 0.924 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.784 3.216 19 H -0.190 1.190 20 H -0.211 1.211 21 H -0.195 1.195 22 N -0.258 5.258 23 C 0.118 3.882 24 N -0.180 5.180 25 C -0.073 4.073 26 C -0.156 4.156 27 C -0.164 4.164 28 C -0.088 4.088 29 N -0.278 5.278 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.192 0.808 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.245 0.755 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.010 0.990 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.110 0.890 50 H 0.094 0.906 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.166 -21.493 -18.227 28.848 hybrid contribution -1.253 0.991 0.264 1.620 sum -7.420 -20.502 -17.964 28.250 Atomic orbital electron populations 1.20924 0.84872 1.05281 1.04975 1.22259 0.99131 0.87042 0.86955 1.22809 0.94686 1.01980 1.06257 1.21478 0.92089 0.92365 0.91288 1.20100 0.98895 0.91128 0.84653 1.45913 1.55103 1.26451 1.08762 1.22360 0.76665 0.79748 0.93099 1.90654 1.55680 1.51864 1.47221 1.21627 0.93652 0.97859 0.89743 0.87566 1.58973 1.05230 1.08258 1.62243 1.21392 0.94656 0.99134 0.96751 1.18828 0.95561 0.95172 0.90297 1.21707 1.01663 1.39425 0.95284 0.92415 1.25917 0.98679 0.96658 0.98470 1.70106 1.29112 1.49007 1.08889 0.85592 0.79593 0.79216 0.77183 1.19025 1.21108 1.19496 1.67784 1.41776 0.98078 1.18160 1.21384 0.85550 0.90783 0.90489 1.61357 1.20634 0.98907 1.37139 1.23259 0.97337 0.99316 0.87382 1.22547 0.98314 0.91463 1.03280 1.22462 0.96202 0.97710 1.00055 1.23000 0.94910 0.88651 1.02276 1.68219 1.08418 1.31714 1.19448 0.88001 0.89787 0.87932 0.80761 0.88086 0.90395 0.75473 0.84002 0.83929 0.93433 0.91389 0.98997 0.97581 0.92971 0.89402 0.93748 0.88666 0.89727 0.90073 0.88979 0.90627 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.22 71.23 0.73 -0.28 16 2 C 0.19 3.40 6.82 42.59 0.29 3.69 16 3 C -0.23 -4.06 9.51 22.45 0.21 -3.84 16 4 C 0.17 3.76 6.19 42.58 0.26 4.03 16 5 C 0.18 3.87 6.02 85.63 0.52 4.38 16 6 N -0.71 -17.13 5.55 -466.80 -2.59 -19.72 16 7 C 0.50 14.84 7.07 87.66 0.62 15.46 16 8 O -0.57 -20.17 16.25 -3.04 -0.05 -20.22 16 9 C 0.09 2.84 3.15 44.17 0.14 2.98 16 10 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 11 N -0.82 -27.39 8.44 -171.81 -1.45 -28.84 16 12 C -0.08 -3.17 4.78 30.59 0.15 -3.02 16 13 C 0.04 1.98 4.86 29.85 0.15 2.13 16 14 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 15 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 16 C 0.00 0.03 5.46 84.65 0.46 0.49 16 17 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 18 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 N -0.54 -13.54 10.16 -186.05 -1.89 -15.43 16 23 C 0.47 11.44 6.98 261.49 1.82 13.26 16 24 N -0.46 -9.76 5.35 -696.26 -3.73 -13.49 16 25 C 0.05 0.95 6.31 86.65 0.55 1.50 16 26 C -0.12 -1.39 7.06 31.80 0.22 -1.17 16 27 C -0.13 -1.37 6.93 31.47 0.22 -1.16 16 28 C 0.04 0.63 6.33 86.45 0.55 1.17 16 29 N -0.56 -12.06 8.08 -186.04 -1.50 -13.57 16 30 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.67 8.10 -2.39 -0.02 0.65 16 33 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.10 2.00 8.06 -2.39 -0.02 1.98 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.41 9.07 8.46 -92.70 -0.78 8.28 16 37 H 0.35 10.04 9.06 -89.70 -0.81 9.23 16 38 H 0.35 11.75 8.58 -89.69 -0.77 10.98 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.01 0.33 7.75 -2.39 -0.02 0.31 16 43 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 44 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.04 0.87 7.99 -2.39 -0.02 0.85 16 46 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 49 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.08 1.37 6.46 -2.39 -0.02 1.36 16 51 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -73.50 419.21 -3.19 -76.69 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -1.41 Total: 35.51 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 7.12 Total: 9.45 kcal Atomic # 7 Polarization: -136.52 SS G_CDS: -10.88 Total: -147.39 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.05 Total: -20.22 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -73.50 -3.19 -76.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579601803.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.070 kcal (2) G-P(sol) polarization free energy of solvation -73.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds