Wall clock time and date at job start Wed Apr 1 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30841 * 126.46048 * 2 1 4 4 N 1.28902 * 109.73839 * 180.02562 * 3 2 1 5 5 C 1.29835 * 109.48054 * 0.02804 * 4 3 2 6 6 N 1.34690 * 126.46638 * 180.02562 * 2 1 3 7 7 C 1.46243 * 128.85498 * 359.86494 * 6 2 1 8 8 C 1.53320 * 108.73027 * 197.13712 * 7 6 2 9 9 H 1.08993 * 109.45168 * 69.69057 * 8 7 6 10 10 C 1.50701 * 109.45274 * 189.64708 * 8 7 6 11 11 O 1.21278 * 120.00322 * 94.80948 * 10 8 7 12 12 N 1.34780 * 119.99922 * 274.80803 * 10 8 7 13 13 C 1.47483 * 127.03333 * 354.83226 * 12 10 8 14 14 C 1.54008 * 107.08635 * 205.47993 * 13 12 10 15 15 C 1.54615 * 105.12824 * 358.64172 * 14 13 12 16 16 C 1.53005 * 110.73847 * 96.54190 * 15 14 13 17 17 C 1.53001 * 110.73802 * 219.86427 * 15 14 13 18 18 N 1.46503 * 109.47077 * 298.54980 * 17 15 14 19 19 C 1.36939 * 120.00208 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99445 * 359.97438 * 19 18 17 21 21 C 1.38806 * 120.00240 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00052 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00133 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47103 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47245 * 119.99871 * 23 21 19 26 26 H 1.48505 * 109.46977 * 239.99771 * 23 21 19 27 27 C 1.48112 * 127.03678 * 174.86751 * 12 10 8 28 28 C 1.53136 * 109.56501 * 309.66758 * 8 7 6 29 29 C 1.50804 * 128.52431 * 179.90875 * 5 4 3 30 30 H 1.09002 * 109.46764 * 269.96737 * 1 2 3 31 31 H 1.08995 * 109.47478 * 29.97506 * 1 2 3 32 32 H 1.09000 * 109.46630 * 149.97242 * 1 2 3 33 33 H 1.09002 * 109.61526 * 77.35837 * 7 6 2 34 34 H 1.08994 * 109.57621 * 316.90266 * 7 6 2 35 35 H 1.08999 * 109.91804 * 86.11310 * 13 12 10 36 36 H 1.09000 * 109.91523 * 324.83888 * 13 12 10 37 37 H 1.09004 * 110.32674 * 117.58496 * 14 13 12 38 38 H 1.08993 * 110.32608 * 239.70100 * 14 13 12 39 39 H 1.08998 * 109.47117 * 61.44856 * 16 15 14 40 40 H 1.09003 * 109.46691 * 181.45021 * 16 15 14 41 41 H 1.08996 * 109.46889 * 301.44555 * 16 15 14 42 42 H 1.08992 * 109.47368 * 58.54637 * 17 15 14 43 43 H 1.08997 * 109.47151 * 178.55027 * 17 15 14 44 44 H 0.96998 * 120.00127 * 359.97438 * 18 17 15 45 45 H 0.97000 * 119.99936 * 180.02562 * 22 21 19 46 46 H 1.08997 * 110.66844 * 259.12159 * 27 12 10 47 47 H 1.09008 * 110.65836 * 22.06921 * 27 12 10 48 48 H 1.09005 * 109.50034 * 189.39010 * 28 8 7 49 49 H 1.09001 * 109.50523 * 309.49109 * 28 8 7 50 50 H 1.09000 * 109.73196 * 76.22799 * 29 5 4 51 51 H 1.09001 * 109.72579 * 315.54857 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5191 0.6814 -0.0005 5 6 3.5816 -0.6154 -0.0015 6 7 2.3076 -1.0832 -0.0005 7 6 1.9370 -2.4979 0.0016 8 6 3.1553 -3.3253 0.4279 9 1 3.3623 -3.1493 1.4834 10 6 2.8693 -4.7888 0.2098 11 8 3.2207 -5.3288 -0.8177 12 7 2.2230 -5.4975 1.1566 13 6 1.8222 -5.0306 2.4969 14 6 1.7289 -6.2744 3.4003 15 6 2.0669 -7.4689 2.4784 16 6 3.5418 -7.8541 2.6096 17 6 1.1635 -8.6644 2.7876 18 7 1.3802 -9.0954 4.1709 19 6 0.6772 -10.1566 4.6756 20 1 -0.0373 -10.6756 4.0539 21 6 0.8829 -10.5653 5.9861 22 7 1.7541 -9.9331 6.7436 23 14 -0.0766 -12.0125 6.6747 24 1 -0.9862 -12.5460 5.6290 25 1 0.8687 -13.0764 7.0988 26 1 -0.8756 -11.5654 7.8439 27 6 1.7705 -6.9048 1.0642 28 6 4.3720 -2.9138 -0.4060 29 6 4.8053 -1.4968 -0.0043 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3634 0.8901 -0.5134 32 1 -0.3632 -0.8898 -0.5143 33 1 1.6250 -2.7959 -0.9994 34 1 1.1204 -2.6605 0.7049 35 1 0.8518 -4.5370 2.4434 36 1 2.5705 -4.3421 2.8894 37 1 2.4519 -6.2071 4.2132 38 1 0.7199 -6.3778 3.7993 39 1 3.7477 -8.1595 3.6355 40 1 3.7631 -8.6798 1.9333 41 1 4.1652 -6.9975 2.3534 42 1 0.1208 -8.3755 2.6563 43 1 1.4014 -9.4844 2.1101 44 1 2.0222 -8.6294 4.7292 45 1 1.8981 -10.2189 7.6593 46 1 0.7031 -6.9524 0.8486 47 1 2.3392 -7.4426 0.3055 48 1 5.1908 -3.6097 -0.2230 49 1 4.1103 -2.9293 -1.4640 50 1 5.2484 -1.5144 0.9914 51 1 5.5306 -1.1171 -0.7239 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671814512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:34 Heat of formation + Delta-G solvation = 50.016820 kcal Electronic energy + Delta-G solvation = -31167.262844 eV Core-core repulsion = 27102.877707 eV Total energy + Delta-G solvation = -4064.385137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.67011 -40.67041 -38.66459 -36.99377 -34.99923 -34.49991 -32.87691 -31.91072 -31.01634 -30.23906 -29.63681 -27.77455 -27.00158 -25.85993 -25.05026 -23.63014 -22.97838 -22.50405 -21.69471 -20.34132 -19.41757 -18.73459 -17.64645 -17.37742 -17.13292 -16.77507 -16.01198 -15.76466 -15.37826 -14.85563 -14.71072 -14.63593 -14.30201 -14.16122 -13.99347 -13.83148 -13.54529 -13.41290 -13.09928 -12.97739 -12.88359 -12.72104 -12.58062 -12.37460 -12.18967 -11.90588 -11.82272 -11.69214 -11.51671 -11.37727 -11.11257 -10.90079 -10.66994 -10.62827 -10.52514 -10.49822 -10.34007 -10.15869 -9.99746 -9.75012 -9.29223 -8.96212 -8.89251 -7.00310 -5.84881 -3.13360 1.44675 1.88060 2.28350 2.54264 2.63288 3.37645 3.43914 3.45744 3.67001 3.82805 3.88012 3.96985 4.07967 4.37989 4.47187 4.48805 4.52630 4.58339 4.66792 4.73874 4.77041 4.89843 4.99058 5.00607 5.11867 5.17031 5.25489 5.27971 5.35574 5.37771 5.48369 5.50237 5.59525 5.60174 5.65046 5.73503 5.76855 5.79506 5.85714 6.03394 6.08667 6.17006 6.31230 6.40688 6.47365 6.53747 6.65675 6.72701 7.26425 7.63381 7.79119 8.34176 8.42924 9.46039 10.02443 10.37257 11.37978 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.002103 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.422783 B =13309.436550 C =13781.607799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.299 5.299 4 N -0.290 5.290 5 C 0.177 3.823 6 N -0.469 5.469 7 C 0.119 3.881 8 C -0.119 4.119 9 H 0.106 0.894 10 C 0.541 3.459 11 O -0.532 6.532 12 N -0.613 5.613 13 C 0.097 3.903 14 C -0.120 4.120 15 C -0.078 4.078 16 C -0.128 4.128 17 C 0.168 3.832 18 N -0.728 5.728 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.114 3.886 28 C -0.107 4.107 29 C -0.034 4.034 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.098 0.902 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 17.069 -13.776 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 N -0.139 5.139 4 N -0.129 5.129 5 C -0.091 4.091 6 N -0.161 5.161 7 C -0.004 4.004 8 C -0.141 4.141 9 H 0.124 0.876 10 C 0.327 3.673 11 O -0.408 6.408 12 N -0.346 5.346 13 C -0.026 4.026 14 C -0.158 4.158 15 C -0.079 4.079 16 C -0.185 4.185 17 C 0.040 3.960 18 N -0.373 5.373 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.008 4.008 28 C -0.146 4.146 29 C -0.073 4.073 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.112 0.888 49 H 0.102 0.898 50 H 0.116 0.884 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.404 18.149 -14.392 23.205 hybrid contribution -0.808 -2.028 0.859 2.346 sum 0.596 16.121 -13.533 21.057 Atomic orbital electron populations 1.20238 0.83584 1.04642 1.04236 1.24702 0.97125 0.82669 1.04330 1.74498 0.96132 1.23610 1.19686 1.74061 1.12261 1.07990 1.18599 1.24754 0.87016 0.92557 1.04740 1.45919 1.07130 1.08047 1.54993 1.21792 0.97744 0.76365 1.04506 1.21634 0.96349 0.92548 1.03594 0.87589 1.19594 0.77540 0.87314 0.82806 1.90744 1.51457 1.71422 1.27222 1.48843 1.56267 1.14303 1.15219 1.22288 0.99769 0.98339 0.82171 1.22558 1.04105 0.91813 0.97338 1.21876 0.97337 0.95687 0.92978 1.21689 0.93556 1.00206 1.03079 1.20586 0.94801 0.92075 0.88525 1.42322 1.49577 1.37451 1.07961 1.19257 1.16375 1.06272 0.95111 0.91154 1.24725 0.99712 0.99738 0.96737 1.69659 1.37690 1.42732 1.08103 0.86131 0.79129 0.82195 0.78801 1.20570 1.21869 1.21882 1.22637 0.99695 0.80298 0.98209 1.21594 0.96801 0.95578 1.00608 1.20291 0.91178 0.91144 1.04683 0.89385 0.88534 0.90403 0.88412 0.87980 0.91427 0.91069 0.90119 0.89479 0.91187 0.92713 0.93790 0.96084 0.96023 0.78104 0.93542 0.90564 0.89613 0.88789 0.89831 0.88362 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.29 36.01 0.37 0.00 16 2 C 0.18 1.75 8.07 -155.45 -1.25 0.50 16 3 N -0.30 -3.97 12.23 32.70 0.40 -3.57 16 4 N -0.29 -3.89 12.21 32.76 0.40 -3.49 16 5 C 0.18 1.81 7.75 -155.30 -1.20 0.61 16 6 N -0.47 -4.18 3.11 -110.87 -0.35 -4.53 16 7 C 0.12 0.79 6.02 -4.02 -0.02 0.77 16 8 C -0.12 -0.87 2.13 -91.54 -0.19 -1.07 16 9 H 0.11 0.68 6.73 -51.93 -0.35 0.33 16 10 C 0.54 5.57 6.96 -10.98 -0.08 5.50 16 11 O -0.53 -7.36 16.46 5.56 0.09 -7.27 16 12 N -0.61 -6.25 3.21 -169.66 -0.54 -6.80 16 13 C 0.10 0.86 6.69 -2.98 -0.02 0.84 16 14 C -0.12 -1.47 5.51 -25.36 -0.14 -1.61 16 15 C -0.08 -1.07 0.65 -152.54 -0.10 -1.17 16 16 C -0.13 -1.85 8.31 37.16 0.31 -1.54 16 17 C 0.17 3.00 5.10 -4.04 -0.02 2.98 16 18 N -0.73 -16.79 5.16 -59.91 -0.31 -17.09 16 19 C -0.24 -6.31 9.99 -15.06 -0.15 -6.46 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 23 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.11 1.35 6.01 -2.04 -0.01 1.34 16 28 C -0.11 -0.76 4.65 -26.39 -0.12 -0.88 16 29 C -0.03 -0.23 6.34 -27.57 -0.17 -0.41 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.29 8.04 -51.93 -0.42 -0.13 16 33 H 0.10 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.53 6.94 -51.93 -0.36 0.17 16 37 H 0.08 1.05 7.86 -51.93 -0.41 0.64 16 38 H 0.09 1.17 7.85 -51.93 -0.41 0.77 16 39 H 0.07 1.17 7.13 -51.93 -0.37 0.80 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.58 8.09 -51.93 -0.42 0.16 16 42 H 0.02 0.38 8.13 -51.93 -0.42 -0.05 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.38 9.27 6.39 -40.82 -0.26 9.01 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 47 H 0.09 1.10 7.73 -51.92 -0.40 0.70 16 48 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 49 H 0.08 0.67 8.11 -51.93 -0.42 0.24 16 50 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 404.81 15.07 6.10 6.10 Total: -1.00 -34.23 404.81 -9.84 -44.08 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -8.43 Total: 3.26 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.91 Total: -1.07 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.33 Total: -61.71 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.09 Total: -7.27 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.23 -9.84 -44.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671814512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.093 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds