Wall clock time and date at job start Wed Apr 1 2020 04:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.52024 * 2 1 4 4 N 1.46504 * 109.47324 * 299.91850 * 3 2 1 5 5 C 1.34776 * 120.00020 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99622 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00207 * 180.02562 * 5 4 3 8 8 N 1.46498 * 109.47342 * 179.97438 * 7 5 4 9 9 C 1.35316 * 125.86830 * 124.70942 * 8 7 5 10 10 C 1.35352 * 106.17608 * 179.90712 * 9 8 7 11 11 C 1.50699 * 126.75130 * 180.12922 * 10 9 8 12 12 C 1.52993 * 117.49878 * 344.03627 * 11 10 9 13 13 C 1.53000 * 117.49851 * 275.37697 * 11 10 9 14 14 N 1.33772 * 106.49391 * 0.34994 * 10 9 8 15 15 N 1.28636 * 108.88737 * 359.77835 * 14 10 9 16 16 C 1.53350 * 109.47423 * 120.29436 * 2 1 3 17 17 C 1.53044 * 109.60707 * 58.55238 * 16 2 1 18 18 C 1.53196 * 109.31376 * 61.37177 * 17 16 2 19 19 N 1.46928 * 108.77379 * 305.36656 * 18 17 16 20 20 C 1.36936 * 120.62867 * 233.63089 * 19 18 17 21 21 H 1.08002 * 120.00030 * 151.82096 * 20 19 18 22 22 C 1.38813 * 120.00044 * 331.81337 * 20 19 18 23 23 N 1.31618 * 120.00004 * 343.08058 * 22 20 19 24 24 Si 1.86806 * 119.99953 * 163.07948 * 22 20 19 25 25 H 1.48496 * 109.47191 * 90.00149 * 24 22 20 26 26 H 1.48501 * 109.46981 * 210.00196 * 24 22 20 27 27 H 1.48500 * 109.46794 * 329.99854 * 24 22 20 28 28 C 1.46924 * 118.73914 * 53.60715 * 19 18 17 29 29 H 1.09002 * 109.46902 * 180.08351 * 1 2 3 30 30 H 1.09002 * 109.47093 * 300.07627 * 1 2 3 31 31 H 1.08992 * 109.47392 * 60.08359 * 1 2 3 32 32 H 1.09004 * 109.47145 * 59.91989 * 3 2 1 33 33 H 1.08999 * 109.47335 * 179.97438 * 3 2 1 34 34 H 0.96996 * 119.99697 * 0.02562 * 4 3 2 35 35 H 1.09004 * 109.46551 * 299.99588 * 7 5 4 36 36 H 1.08999 * 109.47214 * 59.99114 * 7 5 4 37 37 H 1.08003 * 126.91028 * 0.02562 * 9 8 7 38 38 H 1.08998 * 115.54744 * 129.70990 * 11 10 9 39 39 H 1.09007 * 117.50309 * 0.02562 * 12 11 10 40 40 H 1.09000 * 117.50085 * 145.02120 * 12 11 10 41 41 H 1.08996 * 117.50349 * 214.98479 * 13 11 10 42 42 H 1.09001 * 117.49536 * 0.02562 * 13 11 10 43 43 H 1.08995 * 109.41840 * 298.51416 * 16 2 1 44 44 H 1.08996 * 109.43236 * 178.59691 * 16 2 1 45 45 H 1.09000 * 109.49626 * 301.42206 * 17 16 2 46 46 H 1.08996 * 109.49701 * 181.31987 * 17 16 2 47 47 H 1.08997 * 109.59086 * 185.58003 * 18 17 16 48 48 H 1.09001 * 109.70482 * 65.22018 * 18 17 16 49 49 H 0.96996 * 119.99787 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.58845 * 66.18040 * 28 19 18 51 51 H 1.09003 * 109.58558 * 186.46077 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 7 1.5551 2.1325 -1.1972 5 6 1.8826 3.4223 -1.4108 6 8 2.5793 4.0115 -0.6118 7 6 1.3821 4.1328 -2.6420 8 7 1.8717 5.5136 -2.6420 9 6 2.5791 6.1039 -3.6330 10 6 2.8192 7.3709 -3.2217 11 6 3.5720 8.4364 -3.9761 12 6 4.4410 7.9884 -5.1528 13 6 5.0966 8.4488 -3.8485 14 7 2.2611 7.4897 -2.0118 15 7 1.7078 6.3719 -1.6969 16 6 2.0413 -0.7293 1.2483 17 6 1.5034 -2.1620 1.2625 18 6 2.0141 -2.9072 0.0253 19 7 1.6514 -2.1383 -1.1731 20 6 0.9628 -2.7287 -2.1989 21 1 0.3185 -2.1340 -2.8295 22 6 1.0929 -4.0915 -2.4284 23 7 2.1013 -4.7541 -1.9026 24 14 -0.1633 -4.9851 -3.4835 25 1 0.2725 -4.9566 -4.9028 26 1 -0.2785 -6.3942 -3.0293 27 1 -1.4823 -4.3148 -3.3570 28 6 2.0413 -0.7238 -1.2496 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3633 0.5150 0.8893 31 1 -0.3634 0.5125 -0.8906 32 1 1.6772 1.9566 0.8893 33 1 3.1313 1.4411 0.0005 34 1 0.9976 1.6614 -1.8360 35 1 1.7455 3.6181 -3.5314 36 1 0.2921 4.1341 -2.6428 37 1 2.8881 5.6550 -4.5654 38 1 3.0663 9.3982 -4.0613 39 1 4.4681 6.9230 -5.3818 40 1 4.5074 8.6556 -6.0122 41 1 5.5940 9.4186 -3.8501 42 1 5.5551 7.6859 -3.2192 43 1 1.6994 -0.2043 2.1402 44 1 3.1310 -0.7507 1.2350 45 1 0.4136 -2.1416 1.2508 46 1 1.8486 -2.6714 2.1622 47 1 1.5554 -3.8949 -0.0217 48 1 3.0979 -3.0099 0.0794 49 1 2.1919 -5.7065 -2.0627 50 1 3.1275 -0.6462 -1.2980 51 1 1.6027 -0.2714 -2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671887361.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:36 Heat of formation + Delta-G solvation = 110.295689 kcal Electronic energy + Delta-G solvation = -30615.519342 eV Core-core repulsion = 26553.748093 eV Total energy + Delta-G solvation = -4061.771249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.45712 -40.05996 -38.52722 -37.57427 -35.15527 -34.59018 -33.33629 -31.11705 -30.90906 -30.55707 -29.08134 -26.71085 -25.59792 -25.27352 -24.33542 -23.05327 -22.42292 -22.00206 -21.05563 -20.69046 -20.33292 -18.27400 -17.79952 -17.56762 -16.74732 -16.43581 -15.79374 -15.67748 -15.52743 -14.91068 -14.81985 -14.79283 -14.40988 -13.97903 -13.91726 -13.72173 -13.26287 -13.16148 -12.76741 -12.66057 -12.28972 -12.27333 -11.90186 -11.81765 -11.72605 -11.41118 -11.37098 -11.06573 -11.04485 -10.99979 -10.72034 -10.58036 -10.56652 -10.54790 -10.31465 -10.17814 -9.99410 -9.89931 -9.62113 -9.44853 -9.21986 -9.13398 -8.54344 -6.75143 -5.87825 -3.31031 1.36513 1.93552 2.31520 2.34594 2.99182 3.29132 3.37394 3.38154 3.44816 3.92937 4.22923 4.35834 4.40203 4.50616 4.52573 4.54103 4.61427 4.90023 4.94121 5.07030 5.14281 5.19190 5.28746 5.33103 5.48671 5.51510 5.54497 5.71033 5.74991 5.75950 5.82430 5.84194 5.93823 5.95768 6.04050 6.10052 6.22050 6.27081 6.30974 6.43925 6.49151 6.56073 6.66264 6.71981 6.81289 6.89167 7.29045 7.32415 7.59645 7.69563 7.96117 8.35307 8.39245 9.11545 9.75134 10.32072 11.20285 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.002114 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.491806 B =13240.963917 C =14161.880428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 C 0.135 3.865 4 N -0.714 5.714 5 C 0.499 3.501 6 O -0.515 6.515 7 C 0.094 3.906 8 N -0.279 5.279 9 C -0.048 4.048 10 C 0.008 3.992 11 C -0.071 4.071 12 C -0.170 4.170 13 C -0.165 4.165 14 N -0.266 5.266 15 N -0.051 5.051 16 C -0.095 4.095 17 C -0.143 4.143 18 C 0.169 3.831 19 N -0.587 5.587 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.004 3.996 23 N -0.900 5.900 24 Si 0.900 3.100 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.160 3.840 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.405 0.595 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.189 0.811 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.017 0.983 49 H 0.254 0.746 50 H 0.018 0.982 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 18.645 -4.471 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C 0.012 3.988 4 N -0.367 5.367 5 C 0.281 3.719 6 O -0.390 6.390 7 C -0.032 4.032 8 N -0.073 5.073 9 C -0.198 4.198 10 C -0.129 4.129 11 C -0.091 4.091 12 C -0.208 4.208 13 C -0.203 4.203 14 N -0.133 5.133 15 N -0.030 5.030 16 C -0.133 4.133 17 C -0.183 4.183 18 C 0.044 3.956 19 N -0.309 5.309 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.544 5.544 24 Si 0.730 3.270 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.033 3.967 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.241 0.759 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.206 0.794 38 H 0.139 0.861 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.104 0.896 48 H 0.035 0.965 49 H 0.064 0.936 50 H 0.035 0.965 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.163 19.080 -2.501 19.244 hybrid contribution -0.433 -1.278 -1.933 2.357 sum -0.270 17.802 -4.434 18.348 Atomic orbital electron populations 1.21774 0.94154 1.03227 0.99604 1.21406 0.96622 0.92029 0.99404 1.21500 0.99062 0.92064 0.86221 1.45965 1.53393 1.10963 1.26393 1.20138 0.81787 0.82712 0.87228 1.90833 1.36810 1.65556 1.45786 1.21929 1.02869 0.77532 1.00827 1.46716 1.36507 1.11325 1.12710 1.23256 1.03689 0.95185 0.97625 1.20979 1.04021 0.93965 0.93965 1.19982 0.91874 0.97193 1.00055 1.23033 1.03307 1.02254 0.92203 1.23022 0.93789 1.03448 1.00046 1.75079 1.11288 1.14796 1.12128 1.78453 1.18949 0.93685 1.11955 1.21407 0.99985 0.96567 0.95332 1.22223 1.00826 0.95159 1.00048 1.20794 0.96678 0.95581 0.82595 1.43968 1.65136 1.05138 1.16648 1.19089 1.18691 0.91756 1.08780 0.91847 1.25047 0.97102 0.98196 0.99186 1.70030 1.28247 1.08380 1.47741 0.86343 0.81416 0.79200 0.80046 1.21438 1.21560 1.20503 1.20873 0.96034 0.86650 0.93161 0.90374 0.94017 0.93904 0.91597 0.91488 0.75871 0.84507 0.85155 0.79358 0.86084 0.88556 0.87945 0.88068 0.88587 0.93364 0.92538 0.92247 0.93248 0.89581 0.96487 0.93576 0.96466 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 7.82 37.16 0.29 -1.57 16 2 C -0.09 -1.36 0.53 -154.23 -0.08 -1.45 16 3 C 0.14 1.80 4.58 -4.04 -0.02 1.78 16 4 N -0.71 -7.97 5.00 -60.29 -0.30 -8.27 16 5 C 0.50 6.00 7.84 -10.99 -0.09 5.91 16 6 O -0.52 -8.74 15.68 5.55 0.09 -8.65 16 7 C 0.09 0.75 6.94 -5.20 -0.04 0.72 16 8 N -0.28 -3.20 3.20 -62.44 -0.20 -3.40 16 9 C -0.05 -0.46 10.89 -17.04 -0.19 -0.65 16 10 C 0.01 0.09 6.88 -82.78 -0.57 -0.48 16 11 C -0.07 -0.60 6.33 -91.78 -0.58 -1.18 16 12 C -0.17 -1.02 10.03 -26.70 -0.27 -1.29 16 13 C -0.17 -1.23 10.24 -26.70 -0.27 -1.51 16 14 N -0.27 -4.02 12.41 33.29 0.41 -3.61 16 15 N -0.05 -0.78 12.13 60.35 0.73 -0.04 16 16 C -0.09 -1.46 4.73 -26.53 -0.13 -1.59 16 17 C -0.14 -2.53 5.74 -26.61 -0.15 -2.68 16 18 C 0.17 3.76 5.30 -3.71 -0.02 3.74 16 19 N -0.59 -13.24 2.44 -172.32 -0.42 -13.66 16 20 C -0.25 -6.35 9.58 -15.06 -0.14 -6.50 16 21 H 0.06 1.54 7.89 -52.49 -0.41 1.12 16 22 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 23 N -0.90 -24.93 11.20 55.49 0.62 -24.31 16 24 Si 0.90 20.49 29.59 -169.99 -5.03 15.46 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 C 0.16 2.90 4.92 -3.71 -0.02 2.89 16 29 H 0.08 1.33 5.97 -51.93 -0.31 1.02 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.54 6.87 -51.93 -0.36 0.19 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.41 3.77 6.22 -40.82 -0.25 3.52 16 35 H 0.14 0.56 8.07 -51.93 -0.42 0.15 16 36 H 0.13 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.19 1.04 7.44 -52.48 -0.39 0.65 16 38 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.10 0.51 7.22 -51.92 -0.37 0.14 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.06 6.34 -51.93 -0.33 0.73 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.09 2.17 6.06 -51.93 -0.31 1.86 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 50 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.05 0.82 6.83 -51.93 -0.35 0.47 16 LS Contribution 403.29 15.07 6.08 6.08 Total: -1.00 -34.12 403.29 -8.52 -42.65 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.15 Total: 1.60 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.36 Total: -3.84 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.85 Total: -53.29 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.12 -8.52 -42.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671887361.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.941 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds