Wall clock time and date at job start Wed Apr 1 2020 04:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 112.90508 * 2 1 4 4 C 1.53882 * 113.68290 * 228.44912 * 2 1 3 5 5 H 1.09000 * 113.63446 * 104.96009 * 4 2 1 6 6 N 1.46491 * 113.64030 * 334.06982 * 4 2 1 7 7 C 1.34776 * 119.99928 * 154.99597 * 6 4 2 8 8 O 1.21276 * 120.00006 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00045 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.47198 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.35351 * 126.91863 * 84.99603 * 11 10 9 13 13 N 1.33774 * 106.49823 * 179.97438 * 12 11 10 14 14 N 1.28628 * 108.88769 * 0.02562 * 13 12 11 15 15 N 1.28719 * 110.17706 * 359.75472 * 14 13 12 16 16 H 0.97001 * 125.86736 * 180.24237 * 15 14 13 17 17 C 1.52250 * 86.55051 * 218.62012 * 4 2 1 18 18 H 1.09001 * 113.66524 * 142.25476 * 17 4 2 19 19 C 1.53059 * 111.70728 * 272.52302 * 17 4 2 20 20 C 1.53027 * 109.40764 * 147.21068 * 19 17 4 21 21 C 1.51664 * 109.37040 * 295.88206 * 20 19 17 22 22 N 1.45888 * 110.59972 * 56.22213 * 21 20 19 23 23 C 1.36941 * 118.48299 * 142.42583 * 22 21 20 24 24 H 1.07995 * 120.00344 * 195.54205 * 23 22 21 25 25 C 1.38811 * 119.99880 * 15.27052 * 23 22 21 26 26 N 1.31629 * 120.00061 * 30.51392 * 25 23 22 27 27 Si 1.86797 * 120.00255 * 210.51416 * 25 23 22 28 28 H 1.48493 * 109.47268 * 94.99513 * 27 25 23 29 29 H 1.48496 * 109.47294 * 215.00028 * 27 25 23 30 30 H 1.48507 * 109.46843 * 334.99894 * 27 25 23 31 31 C 1.45091 * 123.03846 * 322.15308 * 22 21 20 32 32 H 1.08993 * 112.26057 * 156.05985 * 31 22 21 33 33 H 1.08994 * 109.46838 * 288.58080 * 1 2 3 34 34 H 1.09001 * 109.46859 * 48.57807 * 1 2 3 35 35 H 1.08994 * 109.47220 * 168.57942 * 1 2 3 36 36 H 1.09008 * 109.47199 * 156.85869 * 3 2 1 37 37 H 1.09002 * 109.47199 * 276.85290 * 3 2 1 38 38 H 1.08999 * 109.47550 * 36.85815 * 3 2 1 39 39 H 0.97001 * 120.00120 * 335.00199 * 6 4 2 40 40 H 1.09007 * 109.47464 * 300.00341 * 9 7 6 41 41 H 1.08998 * 109.47295 * 60.00111 * 9 7 6 42 42 H 1.09003 * 109.46716 * 299.99661 * 10 9 7 43 43 H 1.08993 * 109.47593 * 59.99990 * 10 9 7 44 44 H 1.08001 * 126.74533 * 359.97438 * 12 11 10 45 45 H 1.08996 * 109.48662 * 267.19138 * 19 17 4 46 46 H 1.08998 * 109.47705 * 27.23601 * 19 17 4 47 47 H 1.08995 * 109.55954 * 55.18943 * 20 19 17 48 48 H 1.09000 * 109.56049 * 175.41086 * 20 19 17 49 49 H 1.09007 * 107.61468 * 296.77455 * 21 20 19 50 50 H 1.08994 * 110.46300 * 177.49099 * 21 20 19 51 51 H 0.96995 * 119.99759 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1482 -0.9347 -1.0546 5 1 2.5597 -0.4095 -1.9165 6 7 1.2789 -2.0522 -1.4308 7 6 1.4200 -2.6399 -2.6354 8 8 2.2670 -2.2438 -3.4078 9 6 0.5254 -3.7891 -3.0226 10 6 0.8919 -4.2696 -4.4282 11 6 -0.0032 -5.4185 -4.8156 12 6 -1.2383 -5.3380 -5.3633 13 7 -1.6582 -6.5958 -5.5401 14 7 -0.7440 -7.4016 -5.1286 15 7 0.2683 -6.7382 -4.6904 16 1 1.0846 -7.1189 -4.3304 17 6 3.1987 -1.2726 -0.0057 18 1 3.5018 -2.3196 -0.0115 19 6 4.3736 -0.2924 -0.0450 20 6 4.9279 -0.1061 1.3691 21 6 3.8696 0.5386 2.2434 22 7 2.6454 -0.2548 2.2369 23 6 1.9314 -0.3634 3.4004 24 1 1.1763 -1.1289 3.5012 25 6 2.1821 0.5068 4.4524 26 7 2.5985 1.7315 4.2085 27 14 1.9288 -0.0599 6.2142 28 1 3.2192 -0.5404 6.7700 29 1 1.4291 1.0743 7.0321 30 1 0.9364 -1.1644 6.2409 31 6 2.1462 -0.9294 1.0533 32 1 1.5031 -1.7742 1.2999 33 1 -0.3633 0.3274 0.9741 34 1 -0.3633 0.6799 -0.7706 35 1 -0.3633 -1.0073 -0.2035 36 1 3.1375 1.3762 0.4039 37 1 2.1540 1.7917 -1.0203 38 1 1.5096 2.0641 0.6164 39 1 0.6016 -2.3692 -0.8129 40 1 0.6567 -4.6068 -2.3137 41 1 -0.5139 -3.4608 -3.0100 42 1 0.7607 -3.4522 -5.1373 43 1 1.9311 -4.5981 -4.4405 44 1 -1.7785 -4.4357 -5.6093 45 1 5.1558 -0.6881 -0.6928 46 1 4.0328 0.6682 -0.4313 47 1 5.1897 -1.0772 1.7893 48 1 5.8145 0.5269 1.3331 49 1 3.6621 1.5278 1.8350 50 1 4.2304 0.6393 3.2669 51 1 2.7733 2.3397 4.9436 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689147403.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:11 Heat of formation + Delta-G solvation = 115.938805 kcal Electronic energy + Delta-G solvation = -31565.404254 eV Core-core repulsion = 27503.877709 eV Total energy + Delta-G solvation = -4061.526545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.65488 -41.15494 -39.25514 -35.56292 -34.74429 -33.52140 -33.35391 -32.68321 -30.62059 -30.29267 -29.86876 -26.95100 -25.99446 -25.37604 -24.17000 -23.31007 -22.53569 -22.05528 -21.16624 -20.38758 -19.39110 -18.63345 -17.73156 -17.18328 -16.80151 -16.41517 -15.94036 -15.82308 -14.82518 -14.79948 -14.68762 -14.50217 -14.08470 -13.83108 -13.65029 -13.46828 -13.18209 -12.82759 -12.62409 -12.56035 -12.20981 -12.17630 -12.09281 -11.75562 -11.68454 -11.45185 -11.32944 -11.18350 -11.10522 -10.94322 -10.89800 -10.77353 -10.55084 -10.26179 -10.07667 -10.03610 -9.77565 -9.60096 -9.48662 -9.44891 -9.16670 -8.70538 -8.27540 -6.85115 -5.89503 -3.14442 1.16346 2.19477 2.35862 2.55010 3.12653 3.34428 3.44020 3.44631 4.06201 4.28246 4.46424 4.47358 4.56658 4.80357 4.85950 4.90423 5.02670 5.08504 5.13630 5.19470 5.27637 5.37689 5.53734 5.54005 5.55948 5.63495 5.75187 5.77478 5.86322 5.95345 6.05178 6.11418 6.17317 6.23168 6.35646 6.38036 6.44330 6.50000 6.50150 6.54872 6.68187 6.72246 6.74548 6.89110 7.03920 7.11548 7.34352 7.53672 7.62225 7.79376 8.08597 8.18842 8.31838 9.15158 9.85313 10.25691 11.17923 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.002349 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.959972 B =11915.244722 C =12574.889354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.115 4.115 3 C -0.137 4.137 4 C 0.122 3.878 5 H 0.095 0.905 6 N -0.703 5.703 7 C 0.514 3.486 8 O -0.545 6.545 9 C -0.139 4.139 10 C -0.032 4.032 11 C -0.006 4.006 12 C -0.046 4.046 13 N -0.266 5.266 14 N -0.084 5.084 15 N -0.389 5.389 16 H 0.448 0.552 17 C -0.128 4.128 18 H 0.066 0.934 19 C -0.109 4.109 20 C -0.142 4.142 21 C 0.171 3.829 22 N -0.568 5.568 23 C -0.265 4.265 24 H 0.070 0.930 25 C 0.008 3.992 26 N -0.888 5.888 27 Si 0.885 3.115 28 H -0.289 1.289 29 H -0.294 1.294 30 H -0.280 1.280 31 C 0.188 3.812 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.097 0.903 37 H 0.034 0.966 38 H 0.060 0.940 39 H 0.401 0.599 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.192 0.808 45 H 0.047 0.953 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.031 0.969 50 H 0.076 0.924 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 -8.954 -14.734 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.119 4.119 3 C -0.194 4.194 4 C 0.017 3.983 5 H 0.113 0.887 6 N -0.353 5.353 7 C 0.300 3.700 8 O -0.422 6.422 9 C -0.179 4.179 10 C -0.072 4.072 11 C -0.140 4.140 12 C -0.203 4.203 13 N -0.133 5.133 14 N -0.064 5.064 15 N -0.110 5.110 16 H 0.293 0.707 17 C -0.149 4.149 18 H 0.085 0.915 19 C -0.147 4.147 20 C -0.180 4.180 21 C 0.046 3.954 22 N -0.286 5.286 23 C -0.394 4.394 24 H 0.088 0.912 25 C -0.191 4.191 26 N -0.531 5.531 27 Si 0.714 3.286 28 H -0.216 1.216 29 H -0.221 1.221 30 H -0.205 1.205 31 C 0.077 3.923 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.115 0.885 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.237 0.763 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.106 0.894 44 H 0.209 0.791 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.049 0.951 50 H 0.094 0.906 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.672 -9.897 -15.467 18.439 hybrid contribution 0.410 0.380 1.759 1.846 sum -1.262 -9.516 -13.708 16.735 Atomic orbital electron populations 1.21588 0.95261 0.99707 1.01801 1.23081 0.95072 0.96639 0.97130 1.22077 1.03981 0.93894 0.99451 1.21905 0.91931 0.87584 0.96915 0.88706 1.45785 1.37668 1.34744 1.17121 1.20439 0.84264 0.83678 0.81665 1.90708 1.35891 1.64582 1.51035 1.21674 1.01145 0.97645 0.97484 1.19875 0.97498 0.93293 0.96544 1.22365 0.98996 0.86298 1.06322 1.23477 0.94430 0.97358 1.05072 1.75117 1.21069 1.00466 1.16677 1.78311 0.92615 1.20938 1.14533 1.45174 1.17090 1.05413 1.43360 0.70651 1.22865 0.95755 0.99035 0.97237 0.91523 1.21611 0.95936 0.99502 0.97631 1.21791 0.99279 1.01156 0.95820 1.20443 0.83939 0.92322 0.98678 1.43334 1.22857 1.56659 1.05702 1.19201 1.18293 1.11722 0.90192 0.91243 1.24685 1.01474 0.94537 0.98407 1.70250 1.49241 1.02997 1.30598 0.86537 0.77760 0.78096 0.86157 1.21597 1.22056 1.20519 1.21232 0.92402 0.93431 0.85276 0.91154 0.91717 0.93864 0.94027 0.88515 0.94708 0.92099 0.76273 0.88859 0.88065 0.87689 0.89410 0.79121 0.93397 0.90010 0.92912 0.92627 0.95112 0.90604 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.97 37.16 0.33 -1.54 16 2 C -0.11 -1.86 1.34 -153.92 -0.21 -2.07 16 3 C -0.14 -2.41 7.27 37.15 0.27 -2.14 16 4 C 0.12 1.77 3.31 -67.87 -0.22 1.55 16 5 H 0.09 1.50 7.30 -51.93 -0.38 1.12 16 6 N -0.70 -8.11 4.70 -53.75 -0.25 -8.36 16 7 C 0.51 5.61 7.83 -10.99 -0.09 5.52 16 8 O -0.54 -7.92 15.58 5.56 0.09 -7.84 16 9 C -0.14 -0.92 5.68 -27.88 -0.16 -1.08 16 10 C -0.03 -0.20 5.07 -27.88 -0.14 -0.34 16 11 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 12 C -0.05 -0.38 11.99 -17.73 -0.21 -0.60 16 13 N -0.27 -3.01 12.41 30.24 0.38 -2.64 16 14 N -0.08 -0.88 13.38 60.35 0.81 -0.07 16 15 N -0.39 -2.72 6.98 33.54 0.23 -2.49 16 16 H 0.45 1.59 8.96 -190.40 -1.71 -0.11 16 17 C -0.13 -2.05 4.04 -90.94 -0.37 -2.42 16 18 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 19 C -0.11 -1.76 5.14 -26.69 -0.14 -1.89 16 20 C -0.14 -2.53 5.96 -27.39 -0.16 -2.69 16 21 C 0.17 3.74 4.15 -5.05 -0.02 3.72 16 22 N -0.57 -12.67 2.71 -167.63 -0.45 -13.13 16 23 C -0.27 -6.70 9.50 -15.06 -0.14 -6.84 16 24 H 0.07 1.74 7.90 -52.49 -0.41 1.33 16 25 C 0.01 0.21 4.54 -17.43 -0.08 0.13 16 26 N -0.89 -24.11 11.34 55.49 0.63 -23.48 16 27 Si 0.88 20.67 29.65 -169.99 -5.04 15.63 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 31 C 0.19 3.42 3.44 -68.38 -0.24 3.18 16 32 H 0.07 1.27 7.83 -51.93 -0.41 0.87 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.51 5.91 -51.93 -0.31 0.20 16 36 H 0.10 1.79 1.86 -51.92 -0.10 1.70 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 39 H 0.40 3.96 6.81 -40.82 -0.28 3.69 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 44 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.08 1.32 4.55 -51.93 -0.24 1.08 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 49 H 0.03 0.72 5.78 -51.93 -0.30 0.42 16 50 H 0.08 1.90 6.14 -51.93 -0.32 1.58 16 51 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -31.52 389.78 -8.92 -40.43 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -9.07 Total: 4.14 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.11 Total: -8.07 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 1.34 Total: -50.16 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.04 Total: 15.63 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.52 -8.92 -40.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689147403.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.373 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds