Wall clock time and date at job start Wed Apr 1 2020 04:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 112.90508 * 2 1 4 4 C 1.53882 * 113.68290 * 228.44912 * 2 1 3 5 5 H 1.09000 * 113.63446 * 104.96009 * 4 2 1 6 6 N 1.46491 * 113.64030 * 334.06982 * 4 2 1 7 7 C 1.34776 * 119.99928 * 154.99597 * 6 4 2 8 8 O 1.21276 * 120.00006 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00045 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.47198 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.35351 * 126.91863 * 84.99603 * 11 10 9 13 13 N 1.33774 * 106.49823 * 179.97438 * 12 11 10 14 14 N 1.28628 * 108.88769 * 0.02562 * 13 12 11 15 15 N 1.28719 * 110.17706 * 359.75472 * 14 13 12 16 16 H 0.97001 * 125.86736 * 180.24237 * 15 14 13 17 17 C 1.52250 * 86.55051 * 218.62012 * 4 2 1 18 18 H 1.09001 * 113.66524 * 142.25476 * 17 4 2 19 19 C 1.53059 * 111.70728 * 272.52302 * 17 4 2 20 20 C 1.53027 * 109.40764 * 147.21068 * 19 17 4 21 21 C 1.51664 * 109.37040 * 295.88206 * 20 19 17 22 22 N 1.45888 * 110.59972 * 56.22213 * 21 20 19 23 23 C 1.36941 * 118.48299 * 142.42583 * 22 21 20 24 24 H 1.07995 * 120.00344 * 195.54205 * 23 22 21 25 25 C 1.38811 * 119.99880 * 15.27052 * 23 22 21 26 26 N 1.31629 * 120.00061 * 30.51392 * 25 23 22 27 27 Si 1.86797 * 120.00255 * 210.51416 * 25 23 22 28 28 H 1.48493 * 109.47268 * 94.99513 * 27 25 23 29 29 H 1.48496 * 109.47294 * 215.00028 * 27 25 23 30 30 H 1.48507 * 109.46843 * 334.99894 * 27 25 23 31 31 C 1.45091 * 123.03846 * 322.15308 * 22 21 20 32 32 H 1.08993 * 112.26057 * 156.05985 * 31 22 21 33 33 H 1.08994 * 109.46838 * 288.58080 * 1 2 3 34 34 H 1.09001 * 109.46859 * 48.57807 * 1 2 3 35 35 H 1.08994 * 109.47220 * 168.57942 * 1 2 3 36 36 H 1.09008 * 109.47199 * 156.85869 * 3 2 1 37 37 H 1.09002 * 109.47199 * 276.85290 * 3 2 1 38 38 H 1.08999 * 109.47550 * 36.85815 * 3 2 1 39 39 H 0.97001 * 120.00120 * 335.00199 * 6 4 2 40 40 H 1.09007 * 109.47464 * 300.00341 * 9 7 6 41 41 H 1.08998 * 109.47295 * 60.00111 * 9 7 6 42 42 H 1.09003 * 109.46716 * 299.99661 * 10 9 7 43 43 H 1.08993 * 109.47593 * 59.99990 * 10 9 7 44 44 H 1.08001 * 126.74533 * 359.97438 * 12 11 10 45 45 H 1.08996 * 109.48662 * 267.19138 * 19 17 4 46 46 H 1.08998 * 109.47705 * 27.23601 * 19 17 4 47 47 H 1.08995 * 109.55954 * 55.18943 * 20 19 17 48 48 H 1.09000 * 109.56049 * 175.41086 * 20 19 17 49 49 H 1.09007 * 107.61468 * 296.77455 * 21 20 19 50 50 H 1.08994 * 110.46300 * 177.49099 * 21 20 19 51 51 H 0.96995 * 119.99759 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1482 -0.9347 -1.0546 5 1 2.5597 -0.4095 -1.9165 6 7 1.2789 -2.0522 -1.4308 7 6 1.4200 -2.6399 -2.6354 8 8 2.2670 -2.2438 -3.4078 9 6 0.5254 -3.7891 -3.0226 10 6 0.8919 -4.2696 -4.4282 11 6 -0.0032 -5.4185 -4.8156 12 6 -1.2383 -5.3380 -5.3633 13 7 -1.6582 -6.5958 -5.5401 14 7 -0.7440 -7.4016 -5.1286 15 7 0.2683 -6.7382 -4.6904 16 1 1.0846 -7.1189 -4.3304 17 6 3.1987 -1.2726 -0.0057 18 1 3.5018 -2.3196 -0.0115 19 6 4.3736 -0.2924 -0.0450 20 6 4.9279 -0.1061 1.3691 21 6 3.8696 0.5386 2.2434 22 7 2.6454 -0.2548 2.2369 23 6 1.9314 -0.3634 3.4004 24 1 1.1763 -1.1289 3.5012 25 6 2.1821 0.5068 4.4524 26 7 2.5985 1.7315 4.2085 27 14 1.9288 -0.0599 6.2142 28 1 3.2192 -0.5404 6.7700 29 1 1.4291 1.0743 7.0321 30 1 0.9364 -1.1644 6.2409 31 6 2.1462 -0.9294 1.0533 32 1 1.5031 -1.7742 1.2999 33 1 -0.3633 0.3274 0.9741 34 1 -0.3633 0.6799 -0.7706 35 1 -0.3633 -1.0073 -0.2035 36 1 3.1375 1.3762 0.4039 37 1 2.1540 1.7917 -1.0203 38 1 1.5096 2.0641 0.6164 39 1 0.6016 -2.3692 -0.8129 40 1 0.6567 -4.6068 -2.3137 41 1 -0.5139 -3.4608 -3.0100 42 1 0.7607 -3.4522 -5.1373 43 1 1.9311 -4.5981 -4.4405 44 1 -1.7785 -4.4357 -5.6093 45 1 5.1558 -0.6881 -0.6928 46 1 4.0328 0.6682 -0.4313 47 1 5.1897 -1.0772 1.7893 48 1 5.8145 0.5269 1.3331 49 1 3.6621 1.5278 1.8350 50 1 4.2304 0.6393 3.2669 51 1 2.7733 2.3397 4.9436 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689147403.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:10 Heat of formation + Delta-G solvation = 95.350891 kcal Electronic energy + Delta-G solvation = -31566.297013 eV Core-core repulsion = 27503.877709 eV Total energy + Delta-G solvation = -4062.419304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.27108 -42.45047 -40.24143 -37.05102 -35.39111 -34.84221 -34.13851 -33.92215 -32.31739 -31.48217 -30.80807 -28.28581 -27.22666 -26.81375 -25.30052 -24.07923 -23.95620 -22.85424 -22.41713 -21.25581 -20.78456 -19.21961 -19.07184 -18.71520 -17.95289 -17.23919 -16.94793 -16.61838 -16.50232 -16.06584 -15.66161 -15.63028 -15.24139 -15.14907 -14.63642 -14.60415 -14.33959 -14.06101 -13.97989 -13.69404 -13.52829 -13.27160 -13.15148 -13.06766 -12.83383 -12.76104 -12.72317 -12.49609 -12.38424 -12.26223 -12.08581 -11.95029 -11.76539 -11.57774 -11.55421 -11.40368 -11.14238 -10.93948 -10.85957 -10.61565 -10.19306 -10.12555 -9.79895 -8.67254 -7.85373 -5.10564 0.57761 1.45760 1.51221 1.55265 1.56805 1.71408 1.87520 2.25880 2.55664 3.23993 3.47314 3.58191 3.71722 3.75769 3.77284 3.92489 3.98019 4.05502 4.06858 4.19077 4.29417 4.33924 4.44120 4.49833 4.52857 4.61919 4.67647 4.72926 4.81408 4.83181 4.94647 4.97875 5.03057 5.05255 5.09468 5.12130 5.14488 5.16896 5.23809 5.32141 5.34503 5.43613 5.54076 5.58603 5.64225 5.73807 5.80052 5.95771 6.00089 6.38380 6.64812 7.21978 7.33337 7.45090 8.03782 8.37385 9.19703 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.002349 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.959972 B =11915.244722 C =12574.889354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C -0.134 4.134 4 C 0.146 3.854 5 H 0.089 0.911 6 N -0.700 5.700 7 C 0.516 3.484 8 O -0.579 6.579 9 C -0.129 4.129 10 C -0.024 4.024 11 C 0.010 3.990 12 C -0.054 4.054 13 N -0.304 5.304 14 N -0.114 5.114 15 N -0.375 5.375 16 H 0.462 0.538 17 C -0.122 4.122 18 H 0.073 0.927 19 C -0.106 4.106 20 C -0.132 4.132 21 C 0.180 3.820 22 N -0.580 5.580 23 C -0.262 4.262 24 H 0.069 0.931 25 C -0.042 4.042 26 N -0.918 5.918 27 Si 0.939 3.061 28 H -0.293 1.293 29 H -0.302 1.302 30 H -0.271 1.271 31 C 0.171 3.829 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.028 0.972 39 H 0.411 0.589 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.214 0.786 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.012 0.988 50 H 0.037 0.963 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.835 -10.576 -16.407 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.117 4.117 3 C -0.191 4.191 4 C 0.039 3.961 5 H 0.107 0.893 6 N -0.351 5.351 7 C 0.304 3.696 8 O -0.459 6.459 9 C -0.169 4.169 10 C -0.064 4.064 11 C -0.125 4.125 12 C -0.212 4.212 13 N -0.170 5.170 14 N -0.094 5.094 15 N -0.098 5.098 16 H 0.310 0.690 17 C -0.143 4.143 18 H 0.091 0.909 19 C -0.143 4.143 20 C -0.171 4.171 21 C 0.055 3.945 22 N -0.299 5.299 23 C -0.392 4.392 24 H 0.087 0.913 25 C -0.238 4.238 26 N -0.564 5.564 27 Si 0.769 3.231 28 H -0.221 1.221 29 H -0.230 1.230 30 H -0.195 1.195 31 C 0.062 3.938 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.249 0.751 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.124 0.876 43 H 0.109 0.891 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.029 0.971 50 H 0.056 0.944 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.940 -11.589 -17.159 20.797 hybrid contribution 0.507 0.902 2.239 2.467 sum -1.433 -10.688 -14.920 18.409 Atomic orbital electron populations 1.21542 0.94143 1.01733 1.00484 1.22918 0.95963 0.95768 0.97034 1.22006 1.02722 0.94424 0.99926 1.21473 0.91193 0.87794 0.95656 0.89251 1.45729 1.37493 1.34044 1.17857 1.21099 0.83968 0.83899 0.80586 1.90706 1.37559 1.65757 1.51893 1.21673 1.01079 0.96342 0.97845 1.19824 0.97359 0.92819 0.96410 1.22407 0.98475 0.86270 1.05386 1.23967 0.95114 0.97256 1.04860 1.75082 1.22148 1.01834 1.17984 1.78260 0.93538 1.21563 1.15993 1.45208 1.16971 1.05462 1.42208 0.68980 1.22807 0.95626 0.99312 0.96545 0.90890 1.21583 0.96556 0.99741 0.96454 1.21663 0.98505 1.00725 0.96177 1.20203 0.84999 0.92153 0.97171 1.43492 1.22952 1.56933 1.06479 1.19481 1.17626 1.10665 0.91392 0.91297 1.25253 1.02722 0.94743 1.01115 1.70357 1.51475 1.03832 1.30745 0.85662 0.77378 0.77405 0.82627 1.22101 1.22955 1.19526 1.21540 0.93922 0.93706 0.84663 0.90804 0.94704 0.92793 0.91069 0.89583 0.92572 0.95295 0.75076 0.86898 0.85957 0.87622 0.89140 0.76940 0.91226 0.90054 0.93249 0.90998 0.97065 0.94445 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.41 8.97 71.98 0.65 -2.76 16 2 C -0.11 -3.50 1.34 -51.80 -0.07 -3.57 16 3 C -0.13 -4.67 7.27 71.98 0.52 -4.15 16 4 C 0.15 3.82 3.31 45.04 0.15 3.97 16 5 H 0.09 2.56 7.30 -2.39 -0.02 2.54 16 6 N -0.70 -13.59 4.70 -442.35 -2.08 -15.67 16 7 C 0.52 9.30 7.83 87.66 0.69 9.98 16 8 O -0.58 -14.99 15.58 -3.02 -0.05 -15.04 16 9 C -0.13 -1.14 5.68 29.85 0.17 -0.97 16 10 C -0.02 -0.21 5.07 29.85 0.15 -0.06 16 11 C 0.01 0.11 6.56 41.35 0.27 0.38 16 12 C -0.05 -0.77 11.99 83.73 1.00 0.23 16 13 N -0.30 -6.50 12.41 -58.25 -0.72 -7.22 16 14 N -0.11 -2.23 13.38 37.02 0.50 -1.74 16 15 N -0.38 -4.38 6.98 -47.79 -0.33 -4.71 16 16 H 0.46 2.13 8.96 -219.96 -1.97 0.15 16 17 C -0.12 -3.63 4.04 -11.00 -0.04 -3.67 16 18 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 19 C -0.11 -3.19 5.14 30.62 0.16 -3.03 16 20 C -0.13 -4.62 5.96 30.16 0.18 -4.44 16 21 C 0.18 8.06 4.15 86.06 0.36 8.42 16 22 N -0.58 -26.11 2.71 -684.28 -1.85 -27.96 16 23 C -0.26 -13.38 9.50 84.03 0.80 -12.59 16 24 H 0.07 3.46 7.90 -2.91 -0.02 3.44 16 25 C -0.04 -2.25 4.54 84.86 0.38 -1.87 16 26 N -0.92 -51.90 11.34 21.65 0.25 -51.66 16 27 Si 0.94 43.46 29.65 68.60 2.03 45.49 16 28 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 29 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 30 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 31 C 0.17 6.02 3.44 45.45 0.16 6.18 16 32 H 0.07 2.54 7.83 -2.39 -0.02 2.52 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.53 5.91 -2.39 -0.01 1.51 16 36 H 0.09 3.21 1.86 -2.38 0.00 3.20 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.03 1.16 8.04 -2.39 -0.02 1.14 16 39 H 0.41 6.44 6.81 -92.71 -0.63 5.81 16 40 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.11 1.01 8.10 -2.39 -0.02 0.99 16 43 H 0.09 0.81 8.10 -2.39 -0.02 0.79 16 44 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.08 2.49 4.55 -2.39 -0.01 2.48 16 47 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.01 0.56 5.78 -2.38 -0.01 0.55 16 50 H 0.04 1.95 6.14 -2.39 -0.01 1.93 16 51 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -70.78 389.78 1.63 -69.15 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -1.63 Total: 17.29 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 5.52 Total: -7.94 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -4.25 Total: -108.95 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.05 Total: -15.04 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -70.78 1.63 -69.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689147403.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.497 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds